Wall clock time and date at job start Mon Mar 30 2020 01:02:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31001 * 1
3 3 C 1.50696 * 120.00368 * 2 1
4 4 N 1.46500 * 109.46986 * 124.99712 * 3 2 1
5 5 C 1.46502 * 119.99757 * 265.11747 * 4 3 2
6 6 C 1.50696 * 109.47634 * 263.23411 * 5 4 3
7 7 H 1.08007 * 119.99906 * 359.97438 * 6 5 4
8 8 C 1.37877 * 120.00198 * 180.02562 * 6 5 4
9 9 N 1.31518 * 119.99927 * 180.02562 * 8 6 5
10 10 Si 1.86795 * 120.00128 * 359.97438 * 8 6 5
11 11 H 1.48504 * 109.46918 * 90.00078 * 10 8 6
12 12 H 1.48499 * 109.47388 * 210.00387 * 10 8 6
13 13 H 1.48504 * 109.47248 * 330.00651 * 10 8 6
14 14 C 1.34773 * 120.00167 * 85.12523 * 4 3 2
15 15 O 1.21584 * 120.00287 * 4.12215 * 14 4 3
16 16 C 1.47524 * 120.00027 * 184.12461 * 14 4 3
17 17 C 1.36783 * 126.92781 * 173.29236 * 16 14 4
18 18 C 1.41410 * 103.83617 * 180.02562 * 17 16 14
19 19 Cl 1.73598 * 126.72443 * 180.02562 * 18 17 16
20 20 N 1.30227 * 106.55136 * 359.97438 * 18 17 16
21 21 O 1.20882 * 111.95991 * 359.69902 * 20 18 17
22 22 H 1.07999 * 119.99584 * 0.02562 * 1 2 3
23 23 H 1.08003 * 120.00184 * 179.97438 * 1 2 3
24 24 H 1.07999 * 119.99584 * 179.97438 * 2 1 3
25 25 H 1.08998 * 109.46854 * 4.99464 * 3 2 1
26 26 H 1.09003 * 109.47054 * 244.99410 * 3 2 1
27 27 H 1.09000 * 109.47084 * 23.23675 * 5 4 3
28 28 H 1.09008 * 109.46906 * 143.23032 * 5 4 3
29 29 H 0.97000 * 120.00122 * 179.97438 * 9 8 6
30 30 H 1.07997 * 128.08037 * 0.03832 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3050 0.0000
4 7 2.9938 1.3317 1.1315
5 6 2.5951 1.9615 2.3927
6 6 3.1226 3.3723 2.4387
7 1 3.6977 3.7610 1.6113
8 6 2.8718 4.1667 3.5374
9 7 3.3318 5.3981 3.5773
10 14 1.8777 3.4942 4.9688
11 1 2.7918 2.8557 5.9496
12 1 1.1434 4.6048 5.6266
13 1 0.9076 2.4875 4.4681
14 6 4.2163 0.7772 1.0121
15 8 4.5755 0.3216 -0.0564
16 6 5.1188 0.7230 2.1778
17 6 6.3270 0.0861 2.2529
18 6 6.7646 0.3455 3.5723
19 17 8.2458 -0.1936 4.2995
20 7 5.8392 1.0689 4.1346
21 8 4.9220 1.2955 3.3805
22 1 -0.5399 0.9353 -0.0004
23 1 -0.5400 -0.9353 -0.0004
24 1 1.8499 -0.9353 0.0004
25 1 1.3587 2.1315 0.0895
26 1 2.6215 1.4024 -0.9314
27 1 1.5074 1.9777 2.4628
28 1 3.0045 1.3931 3.2280
29 1 3.1551 5.9571 4.3501
30 1 6.8294 -0.4819 1.4839
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000823090458.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:02:20
Heat of formation + Delta-G solvation = 40.155479 kcal
Electronic energy + Delta-G solvation = -18587.688039 eV
Core-core repulsion = 15413.198123 eV
Total energy + Delta-G solvation = -3174.489916 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 270.056 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-46.22462 -40.92422 -38.24169 -37.42348 -35.19950 -34.76501 -34.13444 -32.93121
-30.08317 -27.72134 -25.14598 -24.66931 -23.98015 -21.79009 -20.69993 -19.29070
-18.92039 -18.67220 -17.59495 -17.48933 -16.54311 -16.21926 -15.94368 -15.54451
-14.91373 -14.83308 -14.42425 -14.16581 -13.84672 -13.61427 -13.44153 -13.15734
-12.81204 -12.55578 -12.24814 -12.16946 -11.97158 -11.71082 -11.43758 -11.16937
-10.97283 -10.76257 -10.32273 -9.66309 -8.28786 -6.35374 -0.37776 0.27453
0.69349 1.20220 1.39614 1.43880 1.48589 1.59680 1.90158 2.26149
2.35715 3.05077 3.07480 3.53663 3.62015 3.89216 4.06288 4.19791
4.51870 4.58145 4.64394 4.78427 4.88821 5.07092 5.39221 5.42946
5.72326 5.86328 6.06720 6.31781 6.63430 6.74645 6.92692 7.29932
8.87325
Molecular weight = 270.06amu
Principal moments of inertia in cm(-1)
A = 0.013445 B = 0.008601 C = 0.005862
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2082.036356 B = 3254.743060 C = 4775.720958
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.184 4.184
3 C 0.140 3.860
4 N -0.572 5.572
5 C 0.211 3.789
6 C -0.534 4.534
7 H 0.034 0.966
8 C 0.031 3.969
9 N -0.939 5.939
10 Si 0.923 3.077
11 H -0.271 1.271
12 H -0.283 1.283
13 H -0.230 1.230
14 C 0.601 3.399
15 O -0.547 6.547
16 C -0.068 4.068
17 C -0.137 4.137
18 C 0.048 3.952
19 Cl 0.048 6.952
20 N -0.363 5.363
21 O 0.150 5.850
22 H 0.108 0.892
23 H 0.119 0.881
24 H 0.105 0.895
25 H 0.097 0.903
26 H 0.083 0.917
27 H 0.062 0.938
28 H 0.043 0.957
29 H 0.267 0.733
30 H 0.219 0.781
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.149 -13.343 -1.949 13.486
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.203 4.203
3 C 0.019 3.981
4 N -0.300 5.300
5 C 0.089 3.911
6 C -0.572 4.572
7 H 0.052 0.948
8 C -0.169 4.169
9 N -0.579 5.579
10 Si 0.746 3.254
11 H -0.196 1.196
12 H -0.208 1.208
13 H -0.153 1.153
14 C 0.386 3.614
15 O -0.427 6.427
16 C -0.134 4.134
17 C -0.160 4.160
18 C -0.135 4.135
19 Cl 0.076 6.924
20 N -0.065 5.065
21 O 0.075 5.925
22 H 0.126 0.874
23 H 0.137 0.863
24 H 0.123 0.877
25 H 0.115 0.885
26 H 0.101 0.899
27 H 0.080 0.920
28 H 0.061 0.939
29 H 0.076 0.924
30 H 0.236 0.764
Dipole moment (debyes) X Y Z Total
from point charges 0.025 -12.925 -1.119 12.974
hybrid contribution 0.422 0.100 0.288 0.520
sum 0.447 -12.825 -0.832 12.860
Atomic orbital electron populations
1.24094 0.94917 1.03373 0.97400 1.23138 0.96753 0.97680 1.02697
1.20759 0.91726 0.97088 0.88573 1.47952 1.13174 1.52995 1.15902
1.19914 0.97720 0.91957 0.81499 1.21338 1.34844 0.96978 1.04032
0.94758 1.25580 0.96173 0.94536 1.00567 1.70025 1.47098 1.09247
1.31488 0.86072 0.80068 0.79294 0.79971 1.19608 1.20846 1.15321
1.16616 0.81078 0.78982 0.84720 1.90771 1.75347 1.50540 1.26055
1.24309 0.99276 1.00673 0.89112 1.22954 0.93616 1.02968 0.96441
1.24242 0.94214 1.02032 0.92988 1.98393 1.24574 1.87060 1.82415
1.73865 0.98527 1.15538 1.18587 1.85504 1.33946 1.54887 1.18182
0.87411 0.86285 0.87697 0.88504 0.89855 0.91987 0.93924 0.92363
0.76408
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.33 14.32 67.78 0.97 -2.36 16
2 C -0.18 -4.79 9.81 25.64 0.25 -4.54 16
3 C 0.14 4.42 5.80 85.63 0.50 4.92 16
4 N -0.57 -21.95 2.47 -834.29 -2.06 -24.02 16
5 C 0.21 8.91 3.81 85.63 0.33 9.24 16
6 C -0.53 -28.05 9.01 25.60 0.23 -27.82 16
7 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16
8 C 0.03 1.69 5.47 84.65 0.46 2.15 16
9 N -0.94 -56.12 13.96 21.45 0.30 -55.82 16
10 Si 0.92 40.71 27.47 68.60 1.88 42.59 16
11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16
12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16
13 H -0.23 -8.86 6.54 99.48 0.65 -8.21 16
14 C 0.60 23.47 7.57 86.69 0.66 24.13 16
15 O -0.55 -21.87 16.55 -3.98 -0.07 -21.93 16
16 C -0.07 -2.57 6.86 24.38 0.17 -2.41 16
17 C -0.14 -4.27 10.96 22.71 0.25 -4.02 16
18 C 0.05 1.57 7.97 85.71 0.68 2.25 16
19 Cl 0.05 1.21 29.33 -2.72 -0.08 1.13 16
20 N -0.36 -14.51 12.05 -51.03 -0.61 -15.12 16
21 O 0.15 6.33 7.35 65.74 0.48 6.81 16
22 H 0.11 2.07 7.84 -2.91 -0.02 2.05 16
23 H 0.12 1.95 8.06 -2.91 -0.02 1.93 16
24 H 0.10 2.79 8.06 -2.91 -0.02 2.77 16
25 H 0.10 2.93 7.69 -2.39 -0.02 2.91 16
26 H 0.08 2.68 7.52 -2.39 -0.02 2.67 16
27 H 0.06 2.43 7.08 -2.39 -0.02 2.42 16
28 H 0.04 1.82 4.89 -2.38 -0.01 1.81 16
29 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16
30 H 0.22 5.21 8.06 -2.91 -0.02 5.19 16
Total: -1.00 -63.47 287.08 5.45 -58.02
By element:
Atomic # 1 Polarization: 5.68 SS G_CDS: 1.11 Total: 6.79 kcal
Atomic # 6 Polarization: -2.95 SS G_CDS: 4.49 Total: 1.54 kcal
Atomic # 7 Polarization: -92.58 SS G_CDS: -2.38 Total: -94.96 kcal
Atomic # 8 Polarization: -15.53 SS G_CDS: 0.42 Total: -15.12 kcal
Atomic # 14 Polarization: 40.71 SS G_CDS: 1.88 Total: 42.59 kcal
Atomic # 17 Polarization: 1.21 SS G_CDS: -0.08 Total: 1.13 kcal
Total: -63.47 5.45 -58.02 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000823090458.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.174 kcal
(2) G-P(sol) polarization free energy of solvation -63.470 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.704 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.018 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.155 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds