Wall clock time and date at job start Mon Mar 30 2020 01:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00368 * 2 1 4 4 N 1.46500 * 109.46986 * 124.99712 * 3 2 1 5 5 C 1.46502 * 119.99757 * 265.11747 * 4 3 2 6 6 C 1.50696 * 109.47634 * 263.23411 * 5 4 3 7 7 H 1.08007 * 119.99906 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00198 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99927 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00128 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.46918 * 90.00078 * 10 8 6 12 12 H 1.48499 * 109.47388 * 210.00387 * 10 8 6 13 13 H 1.48504 * 109.47248 * 330.00651 * 10 8 6 14 14 C 1.34773 * 120.00167 * 85.12523 * 4 3 2 15 15 O 1.21584 * 120.00287 * 4.12215 * 14 4 3 16 16 C 1.47524 * 120.00027 * 184.12461 * 14 4 3 17 17 C 1.36783 * 126.92781 * 173.29236 * 16 14 4 18 18 C 1.41410 * 103.83617 * 180.02562 * 17 16 14 19 19 Cl 1.73598 * 126.72443 * 180.02562 * 18 17 16 20 20 N 1.30227 * 106.55136 * 359.97438 * 18 17 16 21 21 O 1.20882 * 111.95991 * 359.69902 * 20 18 17 22 22 H 1.07999 * 119.99584 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.00184 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.99584 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.46854 * 4.99464 * 3 2 1 26 26 H 1.09003 * 109.47054 * 244.99410 * 3 2 1 27 27 H 1.09000 * 109.47084 * 23.23675 * 5 4 3 28 28 H 1.09008 * 109.46906 * 143.23032 * 5 4 3 29 29 H 0.97000 * 120.00122 * 179.97438 * 9 8 6 30 30 H 1.07997 * 128.08037 * 0.03832 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3317 1.1315 5 6 2.5951 1.9615 2.3927 6 6 3.1226 3.3723 2.4387 7 1 3.6977 3.7610 1.6113 8 6 2.8718 4.1667 3.5374 9 7 3.3318 5.3981 3.5773 10 14 1.8777 3.4942 4.9688 11 1 2.7918 2.8557 5.9496 12 1 1.1434 4.6048 5.6266 13 1 0.9076 2.4875 4.4681 14 6 4.2163 0.7772 1.0121 15 8 4.5755 0.3216 -0.0564 16 6 5.1188 0.7230 2.1778 17 6 6.3270 0.0861 2.2529 18 6 6.7646 0.3455 3.5723 19 17 8.2458 -0.1936 4.2995 20 7 5.8392 1.0689 4.1346 21 8 4.9220 1.2955 3.3805 22 1 -0.5399 0.9353 -0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8499 -0.9353 0.0004 25 1 1.3587 2.1315 0.0895 26 1 2.6215 1.4024 -0.9314 27 1 1.5074 1.9777 2.4628 28 1 3.0045 1.3931 3.2280 29 1 3.1551 5.9571 4.3501 30 1 6.8294 -0.4819 1.4839 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823090458.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:20 Heat of formation + Delta-G solvation = 40.155479 kcal Electronic energy + Delta-G solvation = -18587.688039 eV Core-core repulsion = 15413.198123 eV Total energy + Delta-G solvation = -3174.489916 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.22462 -40.92422 -38.24169 -37.42348 -35.19950 -34.76501 -34.13444 -32.93121 -30.08317 -27.72134 -25.14598 -24.66931 -23.98015 -21.79009 -20.69993 -19.29070 -18.92039 -18.67220 -17.59495 -17.48933 -16.54311 -16.21926 -15.94368 -15.54451 -14.91373 -14.83308 -14.42425 -14.16581 -13.84672 -13.61427 -13.44153 -13.15734 -12.81204 -12.55578 -12.24814 -12.16946 -11.97158 -11.71082 -11.43758 -11.16937 -10.97283 -10.76257 -10.32273 -9.66309 -8.28786 -6.35374 -0.37776 0.27453 0.69349 1.20220 1.39614 1.43880 1.48589 1.59680 1.90158 2.26149 2.35715 3.05077 3.07480 3.53663 3.62015 3.89216 4.06288 4.19791 4.51870 4.58145 4.64394 4.78427 4.88821 5.07092 5.39221 5.42946 5.72326 5.86328 6.06720 6.31781 6.63430 6.74645 6.92692 7.29932 8.87325 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.008601 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.036356 B = 3254.743060 C = 4775.720958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.184 4.184 3 C 0.140 3.860 4 N -0.572 5.572 5 C 0.211 3.789 6 C -0.534 4.534 7 H 0.034 0.966 8 C 0.031 3.969 9 N -0.939 5.939 10 Si 0.923 3.077 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.230 1.230 14 C 0.601 3.399 15 O -0.547 6.547 16 C -0.068 4.068 17 C -0.137 4.137 18 C 0.048 3.952 19 Cl 0.048 6.952 20 N -0.363 5.363 21 O 0.150 5.850 22 H 0.108 0.892 23 H 0.119 0.881 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.267 0.733 30 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 -13.343 -1.949 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.203 4.203 3 C 0.019 3.981 4 N -0.300 5.300 5 C 0.089 3.911 6 C -0.572 4.572 7 H 0.052 0.948 8 C -0.169 4.169 9 N -0.579 5.579 10 Si 0.746 3.254 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.153 1.153 14 C 0.386 3.614 15 O -0.427 6.427 16 C -0.134 4.134 17 C -0.160 4.160 18 C -0.135 4.135 19 Cl 0.076 6.924 20 N -0.065 5.065 21 O 0.075 5.925 22 H 0.126 0.874 23 H 0.137 0.863 24 H 0.123 0.877 25 H 0.115 0.885 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.025 -12.925 -1.119 12.974 hybrid contribution 0.422 0.100 0.288 0.520 sum 0.447 -12.825 -0.832 12.860 Atomic orbital electron populations 1.24094 0.94917 1.03373 0.97400 1.23138 0.96753 0.97680 1.02697 1.20759 0.91726 0.97088 0.88573 1.47952 1.13174 1.52995 1.15902 1.19914 0.97720 0.91957 0.81499 1.21338 1.34844 0.96978 1.04032 0.94758 1.25580 0.96173 0.94536 1.00567 1.70025 1.47098 1.09247 1.31488 0.86072 0.80068 0.79294 0.79971 1.19608 1.20846 1.15321 1.16616 0.81078 0.78982 0.84720 1.90771 1.75347 1.50540 1.26055 1.24309 0.99276 1.00673 0.89112 1.22954 0.93616 1.02968 0.96441 1.24242 0.94214 1.02032 0.92988 1.98393 1.24574 1.87060 1.82415 1.73865 0.98527 1.15538 1.18587 1.85504 1.33946 1.54887 1.18182 0.87411 0.86285 0.87697 0.88504 0.89855 0.91987 0.93924 0.92363 0.76408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 14.32 67.78 0.97 -2.36 16 2 C -0.18 -4.79 9.81 25.64 0.25 -4.54 16 3 C 0.14 4.42 5.80 85.63 0.50 4.92 16 4 N -0.57 -21.95 2.47 -834.29 -2.06 -24.02 16 5 C 0.21 8.91 3.81 85.63 0.33 9.24 16 6 C -0.53 -28.05 9.01 25.60 0.23 -27.82 16 7 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 8 C 0.03 1.69 5.47 84.65 0.46 2.15 16 9 N -0.94 -56.12 13.96 21.45 0.30 -55.82 16 10 Si 0.92 40.71 27.47 68.60 1.88 42.59 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.23 -8.86 6.54 99.48 0.65 -8.21 16 14 C 0.60 23.47 7.57 86.69 0.66 24.13 16 15 O -0.55 -21.87 16.55 -3.98 -0.07 -21.93 16 16 C -0.07 -2.57 6.86 24.38 0.17 -2.41 16 17 C -0.14 -4.27 10.96 22.71 0.25 -4.02 16 18 C 0.05 1.57 7.97 85.71 0.68 2.25 16 19 Cl 0.05 1.21 29.33 -2.72 -0.08 1.13 16 20 N -0.36 -14.51 12.05 -51.03 -0.61 -15.12 16 21 O 0.15 6.33 7.35 65.74 0.48 6.81 16 22 H 0.11 2.07 7.84 -2.91 -0.02 2.05 16 23 H 0.12 1.95 8.06 -2.91 -0.02 1.93 16 24 H 0.10 2.79 8.06 -2.91 -0.02 2.77 16 25 H 0.10 2.93 7.69 -2.39 -0.02 2.91 16 26 H 0.08 2.68 7.52 -2.39 -0.02 2.67 16 27 H 0.06 2.43 7.08 -2.39 -0.02 2.42 16 28 H 0.04 1.82 4.89 -2.38 -0.01 1.81 16 29 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.22 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -63.47 287.08 5.45 -58.02 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 1.11 Total: 6.79 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 4.49 Total: 1.54 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -2.38 Total: -94.96 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.42 Total: -15.12 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.88 Total: 42.59 kcal Atomic # 17 Polarization: 1.21 SS G_CDS: -0.08 Total: 1.13 kcal Total: -63.47 5.45 -58.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823090458.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.174 kcal (2) G-P(sol) polarization free energy of solvation -63.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds