Wall clock time and date at job start Mon Mar 30 2020 00:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48502 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47295 * 300.00084 * 3 2 1 6 6 H 1.48498 * 109.47066 * 60.00151 * 3 2 1 7 7 C 1.38815 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99895 * 205.30257 * 7 2 1 9 9 N 1.36932 * 120.00196 * 25.30270 * 7 2 1 10 10 C 1.46504 * 119.99781 * 7.63708 * 9 7 2 11 11 C 1.50698 * 109.47041 * 269.99383 * 10 9 7 12 12 O 1.20832 * 119.99893 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99997 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00101 * 187.63102 * 9 7 2 15 15 C 1.50695 * 109.47374 * 269.49670 * 14 9 7 16 16 C 1.38708 * 120.40342 * 89.53831 * 15 14 9 17 17 C 1.38571 * 118.43842 * 180.02562 * 16 15 14 18 18 C 1.38397 * 119.14966 * 0.02562 * 17 16 15 19 19 Cl 1.73595 * 119.63521 * 179.97438 * 18 17 16 20 20 N 1.31950 * 120.72885 * 359.97328 * 18 17 16 21 21 C 1.31907 * 121.70679 * 0.05011 * 20 18 17 22 22 H 0.97004 * 120.00110 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47490 * 29.99928 * 10 9 7 24 24 H 1.09004 * 109.47057 * 149.99700 * 10 9 7 25 25 H 0.96701 * 116.99774 * 179.97438 * 13 11 10 26 26 H 1.09005 * 109.47352 * 149.49728 * 14 9 7 27 27 H 1.08997 * 109.47469 * 29.50082 * 14 9 7 28 28 H 1.08005 * 120.78424 * 0.02562 * 16 15 14 29 29 H 1.07999 * 120.42281 * 179.72235 * 17 16 15 30 30 H 1.08004 * 119.60844 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0125 -1.2473 0.3992 9 7 1.4240 -2.3310 -0.5079 10 6 0.1361 -2.2396 -1.2001 11 6 -0.9824 -2.4109 -0.2049 12 8 -0.7296 -2.5905 0.9630 13 8 -2.2594 -2.3631 -0.6156 14 6 2.0849 -3.6299 -0.3585 15 6 2.9788 -3.8782 -1.5460 16 6 4.3005 -3.4576 -1.5298 17 6 5.0859 -3.7066 -2.6439 18 6 4.5292 -4.3617 -3.7285 19 17 5.5015 -4.6796 -5.1310 20 7 3.2675 -4.7474 -3.7082 21 6 2.4916 -4.5262 -2.6646 22 1 -0.4850 0.8401 0.0004 23 1 0.0497 -1.2646 -1.6797 24 1 0.0733 -3.0228 -1.9556 25 1 -2.9422 -2.4787 0.0594 26 1 1.3320 -4.4160 -0.2999 27 1 2.6827 -3.6307 0.5528 28 1 4.7079 -2.9480 -0.6691 29 1 6.1180 -3.3892 -2.6675 30 1 1.4634 -4.8562 -2.6846 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066828.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:02 Heat of formation + Delta-G solvation = -35.371796 kcal Electronic energy + Delta-G solvation = -18370.496728 eV Core-core repulsion = 15192.731704 eV Total energy + Delta-G solvation = -3177.765024 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.99648 -38.72601 -36.60564 -35.90596 -34.48712 -32.76630 -31.83163 -30.41549 -27.63393 -25.98375 -23.50471 -22.99889 -21.41898 -20.02663 -17.31829 -16.94250 -16.74524 -16.26605 -15.50854 -15.25775 -14.74531 -14.24097 -14.15356 -13.65750 -13.46521 -13.42529 -12.94185 -12.11058 -11.79245 -11.52691 -11.50398 -11.23283 -11.05716 -10.96015 -10.67733 -10.29351 -10.10489 -10.05721 -9.62966 -9.49165 -9.22062 -8.66364 -8.56200 -7.31091 -6.06906 -3.33949 1.18344 1.44706 1.97275 3.28401 3.37028 3.38661 3.83083 3.86431 4.29313 4.49303 4.68410 5.04202 5.12868 5.18949 5.27317 5.33129 5.53635 5.71683 6.03401 6.16543 6.21186 6.40808 6.62417 6.77737 6.85105 6.97880 7.55752 7.81820 7.93414 7.99665 8.86778 9.37281 9.57160 9.95317 11.04720 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019342 B = 0.006035 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.312804 B = 4638.543009 C = 5559.831701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.291 1.291 7 C -0.257 4.257 8 H 0.083 0.917 9 N -0.562 5.562 10 C 0.187 3.813 11 C 0.481 3.519 12 O -0.519 6.519 13 O -0.543 6.543 14 C 0.184 3.816 15 C -0.123 4.123 16 C -0.046 4.046 17 C -0.155 4.155 18 C 0.159 3.841 19 Cl -0.051 7.051 20 N -0.483 5.483 21 C 0.118 3.882 22 H 0.259 0.741 23 H 0.116 0.884 24 H 0.052 0.948 25 H 0.381 0.619 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.462 -7.455 -5.197 10.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.218 1.218 7 C -0.385 4.385 8 H 0.101 0.899 9 N -0.280 5.280 10 C 0.058 3.942 11 C 0.321 3.679 12 O -0.405 6.405 13 O -0.353 6.353 14 C 0.056 3.944 15 C -0.129 4.129 16 C -0.073 4.073 17 C -0.176 4.176 18 C -0.005 4.005 19 Cl -0.023 7.023 20 N -0.193 5.193 21 C -0.039 4.039 22 H 0.069 0.931 23 H 0.134 0.866 24 H 0.070 0.930 25 H 0.236 0.764 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.496 -7.746 -5.991 11.230 hybrid contribution 0.241 1.454 1.150 1.869 sum 5.737 -6.292 -4.841 9.795 Atomic orbital electron populations 1.69850 1.05363 1.26038 1.53391 1.24740 0.95194 0.98488 1.01000 0.86160 0.79395 0.83515 0.77360 1.20189 1.21362 1.21809 1.19279 0.97566 0.85187 1.36434 0.89872 1.43977 1.17161 1.02908 1.63987 1.20428 0.80998 1.02677 0.90109 1.25161 0.81917 0.69829 0.91026 1.90509 1.83860 1.46023 1.20105 1.84627 1.18512 1.86343 1.45833 1.19734 0.93820 0.88509 0.92322 1.22191 0.95564 0.95337 0.99759 1.21518 0.93114 0.95060 0.97600 1.21779 1.01764 1.00894 0.93172 1.21458 0.90731 0.99294 0.89036 1.98369 1.67797 1.94625 1.41521 1.66907 1.04093 1.19663 1.28676 1.22517 0.98666 0.95333 0.87369 0.93057 0.86588 0.92999 0.76355 0.92552 0.91349 0.83943 0.84401 0.82382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.49 9.00 55.49 0.50 -23.99 16 2 C 0.00 0.09 4.90 -17.43 -0.09 0.01 16 3 Si 0.91 20.72 29.62 -169.99 -5.04 15.69 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.26 -6.38 9.69 -15.06 -0.15 -6.53 16 8 H 0.08 2.00 7.95 -52.49 -0.42 1.58 16 9 N -0.56 -12.51 2.00 -175.99 -0.35 -12.86 16 10 C 0.19 4.10 5.54 -5.19 -0.03 4.07 16 11 C 0.48 11.07 6.42 36.00 0.23 11.31 16 12 O -0.52 -13.67 16.96 -18.75 -0.32 -13.99 16 13 O -0.54 -10.67 13.42 -39.26 -0.53 -11.20 16 14 C 0.18 3.31 5.82 -5.20 -0.03 3.28 16 15 C -0.12 -1.98 5.48 -104.48 -0.57 -2.55 16 16 C -0.05 -0.69 9.86 -39.28 -0.39 -1.07 16 17 C -0.16 -2.15 9.88 -39.40 -0.39 -2.54 16 18 C 0.16 2.41 7.27 -17.44 -0.13 2.28 16 19 Cl -0.05 -0.68 29.11 -51.86 -1.51 -2.19 16 20 N -0.48 -7.88 10.34 -10.36 -0.11 -7.99 16 21 C 0.12 1.84 10.86 -17.55 -0.19 1.65 16 22 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 23 H 0.12 2.82 6.24 -51.93 -0.32 2.49 16 24 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 25 H 0.38 5.94 9.10 45.56 0.41 6.36 16 26 H 0.06 0.95 8.03 -51.93 -0.42 0.53 16 27 H 0.07 1.22 7.99 -51.93 -0.41 0.80 16 28 H 0.14 1.95 8.06 -52.48 -0.42 1.52 16 29 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.16 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 287.38 15.07 4.33 4.33 Total: -1.00 -30.71 287.38 -6.73 -37.43 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -1.98 Total: 4.86 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -1.73 Total: 9.91 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.04 Total: -44.84 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.85 Total: -25.19 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.04 Total: 15.69 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.51 Total: -2.19 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.71 -6.73 -37.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066828.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.063 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds