Wall clock time and date at job start Mon Mar 30 2020 00:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48502 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47295 * 300.00084 * 3 2 1 6 6 H 1.48498 * 109.47066 * 60.00151 * 3 2 1 7 7 C 1.38815 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99895 * 205.30257 * 7 2 1 9 9 N 1.36932 * 120.00196 * 25.30270 * 7 2 1 10 10 C 1.46504 * 119.99781 * 7.63708 * 9 7 2 11 11 C 1.50698 * 109.47041 * 269.99383 * 10 9 7 12 12 O 1.20832 * 119.99893 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99997 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00101 * 187.63102 * 9 7 2 15 15 C 1.50695 * 109.47374 * 269.49670 * 14 9 7 16 16 C 1.38708 * 120.40342 * 89.53831 * 15 14 9 17 17 C 1.38571 * 118.43842 * 180.02562 * 16 15 14 18 18 C 1.38397 * 119.14966 * 0.02562 * 17 16 15 19 19 Cl 1.73595 * 119.63521 * 179.97438 * 18 17 16 20 20 N 1.31950 * 120.72885 * 359.97328 * 18 17 16 21 21 C 1.31907 * 121.70679 * 0.05011 * 20 18 17 22 22 H 0.97004 * 120.00110 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47490 * 29.99928 * 10 9 7 24 24 H 1.09004 * 109.47057 * 149.99700 * 10 9 7 25 25 H 0.96701 * 116.99774 * 179.97438 * 13 11 10 26 26 H 1.09005 * 109.47352 * 149.49728 * 14 9 7 27 27 H 1.08997 * 109.47469 * 29.50082 * 14 9 7 28 28 H 1.08005 * 120.78424 * 0.02562 * 16 15 14 29 29 H 1.07999 * 120.42281 * 179.72235 * 17 16 15 30 30 H 1.08004 * 119.60844 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0125 -1.2473 0.3992 9 7 1.4240 -2.3310 -0.5079 10 6 0.1361 -2.2396 -1.2001 11 6 -0.9824 -2.4109 -0.2049 12 8 -0.7296 -2.5905 0.9630 13 8 -2.2594 -2.3631 -0.6156 14 6 2.0849 -3.6299 -0.3585 15 6 2.9788 -3.8782 -1.5460 16 6 4.3005 -3.4576 -1.5298 17 6 5.0859 -3.7066 -2.6439 18 6 4.5292 -4.3617 -3.7285 19 17 5.5015 -4.6796 -5.1310 20 7 3.2675 -4.7474 -3.7082 21 6 2.4916 -4.5262 -2.6646 22 1 -0.4850 0.8401 0.0004 23 1 0.0497 -1.2646 -1.6797 24 1 0.0733 -3.0228 -1.9556 25 1 -2.9422 -2.4787 0.0594 26 1 1.3320 -4.4160 -0.2999 27 1 2.6827 -3.6307 0.5528 28 1 4.7079 -2.9480 -0.6691 29 1 6.1180 -3.3892 -2.6675 30 1 1.4634 -4.8562 -2.6846 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066828.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:02 Heat of formation + Delta-G solvation = -54.558889 kcal Electronic energy + Delta-G solvation = -18371.328743 eV Core-core repulsion = 15192.731704 eV Total energy + Delta-G solvation = -3178.597039 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19871 -40.47206 -37.86457 -37.37940 -36.24530 -34.25325 -33.16628 -31.92336 -29.31082 -27.56536 -24.70114 -24.56648 -22.84758 -21.70884 -18.88869 -18.49188 -18.26766 -17.51893 -17.20066 -16.94153 -16.04910 -15.93332 -15.57677 -15.25215 -14.98226 -14.81127 -14.09561 -13.64918 -13.40612 -13.22017 -12.80241 -12.67873 -12.54835 -12.35831 -12.21369 -12.04935 -11.93856 -11.84018 -11.16709 -10.79768 -10.63478 -10.46133 -9.77201 -9.09714 -7.98211 -5.24127 0.01055 0.28885 0.85893 1.47127 1.51967 1.59534 2.05082 2.44313 2.71155 2.84933 3.25842 3.57213 3.66168 3.93016 3.99629 4.10748 4.26485 4.57150 4.61691 4.79771 4.96177 5.01948 5.20482 5.24513 5.40460 5.61419 5.65283 6.16465 6.19098 6.76656 7.00416 7.61946 7.80166 8.12198 9.11929 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019342 B = 0.006035 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.312804 B = 4638.543009 C = 5559.831701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.050 4.050 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.304 1.304 7 C -0.250 4.250 8 H 0.089 0.911 9 N -0.575 5.575 10 C 0.187 3.813 11 C 0.484 3.516 12 O -0.558 6.558 13 O -0.535 6.535 14 C 0.187 3.813 15 C -0.131 4.131 16 C -0.049 4.049 17 C -0.149 4.149 18 C 0.149 3.851 19 Cl -0.037 7.037 20 N -0.502 5.502 21 C 0.116 3.884 22 H 0.249 0.751 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.400 0.600 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.153 0.847 29 H 0.166 0.834 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.670 -8.063 -5.921 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.244 4.244 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.221 1.221 6 H -0.232 1.232 7 C -0.379 4.379 8 H 0.107 0.893 9 N -0.294 5.294 10 C 0.058 3.942 11 C 0.326 3.674 12 O -0.448 6.448 13 O -0.346 6.346 14 C 0.060 3.940 15 C -0.136 4.136 16 C -0.076 4.076 17 C -0.170 4.170 18 C -0.015 4.015 19 Cl -0.009 7.009 20 N -0.213 5.213 21 C -0.041 4.041 22 H 0.059 0.941 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.258 0.742 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.171 0.829 29 H 0.184 0.816 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.722 -8.390 -6.740 12.689 hybrid contribution -0.114 1.536 1.334 2.038 sum 6.608 -6.853 -5.407 10.948 Atomic orbital electron populations 1.69981 1.06363 1.25624 1.55767 1.25360 0.95815 1.00941 1.02320 0.85299 0.79094 0.80409 0.76169 1.18705 1.22051 1.23234 1.19608 0.97632 0.86071 1.34568 0.89297 1.44156 1.17538 1.03817 1.63859 1.20414 0.80829 1.02527 0.90477 1.25361 0.82886 0.68619 0.90526 1.90487 1.84639 1.48051 1.21624 1.84559 1.18066 1.85651 1.46364 1.19783 0.94099 0.86918 0.93156 1.21904 0.95906 0.96741 0.99039 1.21723 0.92857 0.94678 0.98343 1.22029 1.02903 0.99857 0.92172 1.21794 0.90723 0.99116 0.89906 1.98373 1.67216 1.94508 1.40764 1.66954 1.04832 1.20430 1.29061 1.22724 0.99332 0.95032 0.87004 0.94111 0.89015 0.89551 0.74156 0.91580 0.91476 0.82893 0.81641 0.80945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.05 9.00 21.65 0.19 -50.85 16 2 C -0.05 -2.58 4.90 84.86 0.42 -2.17 16 3 Si 0.96 42.68 29.62 68.60 2.03 44.71 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.25 -12.22 9.69 84.04 0.81 -11.40 16 8 H 0.09 4.15 7.95 -2.91 -0.02 4.12 16 9 N -0.57 -25.02 2.00 -710.69 -1.42 -26.45 16 10 C 0.19 8.04 5.54 85.63 0.47 8.52 16 11 C 0.48 22.04 6.42 71.24 0.46 22.50 16 12 O -0.56 -29.39 16.96 21.95 0.37 -29.02 16 13 O -0.54 -20.45 13.42 -51.41 -0.69 -21.14 16 14 C 0.19 6.44 5.82 85.63 0.50 6.94 16 15 C -0.13 -3.95 5.48 -19.77 -0.11 -4.06 16 16 C -0.05 -1.35 9.86 22.46 0.22 -1.13 16 17 C -0.15 -3.71 9.88 22.39 0.22 -3.49 16 18 C 0.15 4.16 7.27 84.71 0.62 4.78 16 19 Cl -0.04 -0.90 29.11 -2.72 -0.08 -0.97 16 20 N -0.50 -15.38 10.34 -186.69 -1.93 -17.31 16 21 C 0.12 3.38 10.86 84.66 0.92 4.30 16 22 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 23 H 0.09 4.46 6.24 -2.39 -0.01 4.45 16 24 H 0.09 3.05 8.07 -2.38 -0.02 3.03 16 25 H 0.40 11.98 9.10 -74.06 -0.67 11.31 16 26 H 0.07 2.13 8.03 -2.38 -0.02 2.11 16 27 H 0.07 2.31 7.99 -2.39 -0.02 2.29 16 28 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 29 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.17 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -64.44 287.38 3.52 -60.92 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.51 Total: 15.32 kcal Atomic # 6 Polarization: 20.26 SS G_CDS: 4.53 Total: 24.79 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -3.16 Total: -94.61 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.32 Total: -50.16 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.97 kcal Total: -64.44 3.52 -60.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066828.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.365 kcal (2) G-P(sol) polarization free energy of solvation -64.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds