Wall clock time and date at job start Mon Mar 30 2020 00:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48498 * 109.47324 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47124 * 299.99694 * 3 2 1 6 6 H 1.48500 * 109.47315 * 59.99554 * 3 2 1 7 7 C 1.38803 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00105 * 202.16051 * 7 2 1 9 9 N 1.36934 * 120.00449 * 22.15378 * 7 2 1 10 10 C 1.46508 * 119.99616 * 16.20249 * 9 7 2 11 11 C 1.50708 * 109.46745 * 264.00875 * 10 9 7 12 12 O 1.20822 * 119.99907 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99855 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00630 * 196.19858 * 9 7 2 15 15 C 1.50702 * 109.47405 * 270.00004 * 14 9 7 16 16 C 1.38200 * 119.60765 * 94.99512 * 15 14 9 17 17 C 1.38659 * 119.19073 * 180.02562 * 16 15 14 18 18 C 1.38611 * 118.43969 * 359.97438 * 17 16 15 19 19 C 1.38363 * 119.14972 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 119.63362 * 179.97438 * 19 18 17 21 21 N 1.31869 * 119.61083 * 274.72923 * 15 14 9 22 22 H 0.97000 * 119.99935 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47301 * 24.00302 * 10 9 7 24 24 H 1.08992 * 109.47106 * 144.01051 * 10 9 7 25 25 H 0.96698 * 116.99947 * 180.02562 * 13 11 10 26 26 H 1.09005 * 109.47426 * 30.00245 * 14 9 7 27 27 H 1.09006 * 109.47499 * 150.00052 * 14 9 7 28 28 H 1.08001 * 120.40375 * 359.97438 * 16 15 14 29 29 H 1.07997 * 120.78494 * 180.02562 * 17 16 15 30 30 H 1.08000 * 120.43031 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0304 -1.2365 0.3534 9 7 1.4014 -2.3444 -0.4461 10 6 0.1751 -2.2573 -1.2430 11 6 -1.0219 -2.4263 -0.3430 12 8 -0.8665 -2.6010 0.8424 13 8 -2.2605 -2.3827 -0.8583 14 6 1.9762 -3.6536 -0.1273 15 6 2.9495 -4.0514 -1.2069 16 6 4.2959 -3.7857 -1.0440 17 6 5.1838 -4.1549 -2.0431 18 6 4.6823 -4.7809 -3.1735 19 6 3.3218 -5.0145 -3.2671 20 17 2.6801 -5.7971 -4.6776 21 7 2.5071 -4.6536 -2.2934 22 1 -0.4850 0.8401 -0.0004 23 1 0.1277 -1.2841 -1.7317 24 1 0.1758 -3.0434 -1.9980 25 1 -2.9968 -2.4957 -0.2417 26 1 2.4967 -3.5989 0.8289 27 1 1.1795 -4.3950 -0.0653 28 1 4.6521 -3.2956 -0.1499 29 1 6.2412 -3.9601 -1.9425 30 1 5.3449 -5.0818 -3.9715 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067288.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:38 Heat of formation + Delta-G solvation = -35.647129 kcal Electronic energy + Delta-G solvation = -18457.896394 eV Core-core repulsion = 15280.119430 eV Total energy + Delta-G solvation = -3177.776964 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.96022 -38.66132 -36.52632 -35.75158 -34.40319 -32.54475 -31.90254 -30.45882 -27.58244 -26.14619 -23.27319 -23.00578 -21.44113 -19.99570 -17.07153 -16.85725 -16.64941 -16.03987 -15.54761 -15.26340 -14.97542 -14.23727 -14.12863 -13.58577 -13.39609 -13.28624 -12.89913 -11.93383 -11.65072 -11.48531 -11.44748 -11.17199 -11.01801 -10.88141 -10.63622 -10.22684 -10.10580 -9.97992 -9.67273 -9.38761 -9.17301 -8.65900 -8.55652 -7.16963 -5.99378 -3.33716 1.21879 1.43017 2.00897 3.30754 3.38400 3.40662 3.87203 3.91346 4.35326 4.51995 4.70534 4.96518 5.17023 5.24266 5.28283 5.40662 5.52094 5.85487 6.02070 6.25829 6.42530 6.45485 6.54924 6.79867 6.94781 7.02051 7.61217 7.86436 8.07956 8.14023 8.93101 9.42480 9.62953 10.04596 11.11563 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.006877 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.056177 B = 4070.503484 C = 4998.566039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.263 4.263 8 H 0.081 0.919 9 N -0.555 5.555 10 C 0.189 3.811 11 C 0.481 3.519 12 O -0.518 6.518 13 O -0.542 6.542 14 C 0.190 3.810 15 C 0.154 3.846 16 C -0.153 4.153 17 C -0.067 4.067 18 C -0.173 4.173 19 C 0.175 3.825 20 Cl -0.049 7.049 21 N -0.472 5.472 22 H 0.258 0.742 23 H 0.112 0.888 24 H 0.061 0.939 25 H 0.381 0.619 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.886 -8.487 -5.914 12.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.739 3.261 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.391 4.391 8 H 0.099 0.901 9 N -0.274 5.274 10 C 0.060 3.940 11 C 0.321 3.679 12 O -0.404 6.404 13 O -0.353 6.353 14 C 0.061 3.939 15 C 0.013 3.987 16 C -0.174 4.174 17 C -0.093 4.093 18 C -0.194 4.194 19 C 0.010 3.990 20 Cl -0.021 7.021 21 N -0.184 5.184 22 H 0.068 0.932 23 H 0.129 0.871 24 H 0.078 0.922 25 H 0.237 0.763 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.212 -8.553 -6.028 12.168 hybrid contribution 0.629 1.116 0.411 1.346 sum 6.841 -7.437 -5.617 11.561 Atomic orbital electron populations 1.69899 1.05333 1.25946 1.53125 1.24848 0.95226 0.98579 1.00708 0.86124 0.79255 0.83426 0.77335 1.20186 1.21404 1.21724 1.19286 0.95551 0.84786 1.39511 0.90079 1.43788 1.23603 1.00767 1.59230 1.20241 0.80925 1.02704 0.90129 1.25170 0.83171 0.69857 0.89736 1.90499 1.85917 1.45931 1.18022 1.84630 1.17752 1.86376 1.46507 1.19790 0.93848 0.88607 0.91618 1.22790 0.93860 0.89123 0.92927 1.22122 0.94083 1.00471 1.00730 1.21521 1.00387 0.94999 0.92429 1.21652 0.94112 1.03396 1.00241 1.21622 0.89531 0.97455 0.90380 1.98376 1.88258 1.78558 1.36919 1.66900 1.39238 1.11566 1.00717 0.93170 0.87052 0.92157 0.76348 0.90578 0.92013 0.84171 0.84408 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.16 9.31 55.49 0.52 -24.64 16 2 C 0.01 0.13 4.86 -17.43 -0.08 0.05 16 3 Si 0.91 21.02 29.61 -169.99 -5.03 15.99 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.26 -6.77 9.66 -15.06 -0.15 -6.91 16 8 H 0.08 1.99 7.92 -52.49 -0.42 1.57 16 9 N -0.56 -13.28 2.01 -175.98 -0.35 -13.63 16 10 C 0.19 4.51 5.49 -5.19 -0.03 4.48 16 11 C 0.48 11.73 6.55 36.01 0.24 11.96 16 12 O -0.52 -14.15 16.89 -18.75 -0.32 -14.46 16 13 O -0.54 -11.30 13.42 -39.26 -0.53 -11.83 16 14 C 0.19 3.83 5.94 -5.20 -0.03 3.80 16 15 C 0.15 2.76 6.36 -82.59 -0.53 2.24 16 16 C -0.15 -2.32 9.72 -39.44 -0.38 -2.71 16 17 C -0.07 -0.85 10.17 -39.29 -0.40 -1.25 16 18 C -0.17 -2.26 9.88 -39.40 -0.39 -2.64 16 19 C 0.17 2.75 7.27 -17.44 -0.13 2.62 16 20 Cl -0.05 -0.69 29.11 -51.86 -1.51 -2.20 16 21 N -0.47 -8.61 10.25 -6.61 -0.07 -8.68 16 22 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.11 2.87 6.35 -51.93 -0.33 2.54 16 24 H 0.06 1.33 8.12 -51.93 -0.42 0.91 16 25 H 0.38 6.29 9.10 45.56 0.41 6.70 16 26 H 0.08 1.46 7.94 -51.93 -0.41 1.05 16 27 H 0.06 1.26 8.07 -51.93 -0.42 0.84 16 28 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 287.83 15.07 4.34 4.34 Total: -1.00 -31.55 287.83 -6.82 -38.37 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -1.99 Total: 5.10 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -1.88 Total: 11.64 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.09 Total: -46.95 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.84 Total: -26.29 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.51 Total: -2.20 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.55 -6.82 -38.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067288.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.728 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds