Wall clock time and date at job start Mon Mar 30 2020 00:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48498 * 109.47324 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47124 * 299.99694 * 3 2 1 6 6 H 1.48500 * 109.47315 * 59.99554 * 3 2 1 7 7 C 1.38803 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00105 * 202.16051 * 7 2 1 9 9 N 1.36934 * 120.00449 * 22.15378 * 7 2 1 10 10 C 1.46508 * 119.99616 * 16.20249 * 9 7 2 11 11 C 1.50708 * 109.46745 * 264.00875 * 10 9 7 12 12 O 1.20822 * 119.99907 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99855 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00630 * 196.19858 * 9 7 2 15 15 C 1.50702 * 109.47405 * 270.00004 * 14 9 7 16 16 C 1.38200 * 119.60765 * 94.99512 * 15 14 9 17 17 C 1.38659 * 119.19073 * 180.02562 * 16 15 14 18 18 C 1.38611 * 118.43969 * 359.97438 * 17 16 15 19 19 C 1.38363 * 119.14972 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 119.63362 * 179.97438 * 19 18 17 21 21 N 1.31869 * 119.61083 * 274.72923 * 15 14 9 22 22 H 0.97000 * 119.99935 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47301 * 24.00302 * 10 9 7 24 24 H 1.08992 * 109.47106 * 144.01051 * 10 9 7 25 25 H 0.96698 * 116.99947 * 180.02562 * 13 11 10 26 26 H 1.09005 * 109.47426 * 30.00245 * 14 9 7 27 27 H 1.09006 * 109.47499 * 150.00052 * 14 9 7 28 28 H 1.08001 * 120.40375 * 359.97438 * 16 15 14 29 29 H 1.07997 * 120.78494 * 180.02562 * 17 16 15 30 30 H 1.08000 * 120.43031 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0304 -1.2365 0.3534 9 7 1.4014 -2.3444 -0.4461 10 6 0.1751 -2.2573 -1.2430 11 6 -1.0219 -2.4263 -0.3430 12 8 -0.8665 -2.6010 0.8424 13 8 -2.2605 -2.3827 -0.8583 14 6 1.9762 -3.6536 -0.1273 15 6 2.9495 -4.0514 -1.2069 16 6 4.2959 -3.7857 -1.0440 17 6 5.1838 -4.1549 -2.0431 18 6 4.6823 -4.7809 -3.1735 19 6 3.3218 -5.0145 -3.2671 20 17 2.6801 -5.7971 -4.6776 21 7 2.5071 -4.6536 -2.2934 22 1 -0.4850 0.8401 -0.0004 23 1 0.1277 -1.2841 -1.7317 24 1 0.1758 -3.0434 -1.9980 25 1 -2.9968 -2.4957 -0.2417 26 1 2.4967 -3.5989 0.8289 27 1 1.1795 -4.3950 -0.0653 28 1 4.6521 -3.2956 -0.1499 29 1 6.2412 -3.9601 -1.9425 30 1 5.3449 -5.0818 -3.9715 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067288.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:38 Heat of formation + Delta-G solvation = -56.147395 kcal Electronic energy + Delta-G solvation = -18458.785352 eV Core-core repulsion = 15280.119430 eV Total energy + Delta-G solvation = -3178.665922 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18222 -40.53136 -37.79397 -37.35575 -36.28965 -33.99787 -33.28775 -32.01062 -29.34168 -27.83027 -24.75633 -24.33084 -22.93611 -21.80568 -18.88059 -18.53272 -18.04432 -17.40262 -17.13752 -16.88995 -16.46499 -16.01348 -15.68450 -15.28654 -14.91745 -14.70502 -14.10741 -13.60042 -13.34546 -13.02428 -12.77907 -12.72117 -12.50467 -12.44560 -12.21922 -12.06436 -12.00597 -11.85976 -11.22591 -10.80343 -10.66683 -10.45410 -9.77715 -9.04957 -7.97038 -5.32037 0.06023 0.32499 0.88790 1.48386 1.51197 1.60774 1.97531 2.42564 2.69479 2.82029 3.23555 3.52310 3.64463 3.92073 4.08524 4.18293 4.44461 4.55929 4.67322 4.75339 4.91047 5.07448 5.12872 5.17234 5.27450 5.62216 5.67286 6.09987 6.17353 6.90523 6.98575 7.55967 7.74675 8.13561 9.12954 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.006877 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.056177 B = 4070.503484 C = 4998.566039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.293 1.293 6 H -0.301 1.301 7 C -0.260 4.260 8 H 0.092 0.908 9 N -0.569 5.569 10 C 0.195 3.805 11 C 0.484 3.516 12 O -0.553 6.553 13 O -0.534 6.534 14 C 0.193 3.807 15 C 0.130 3.870 16 C -0.158 4.158 17 C -0.054 4.054 18 C -0.159 4.159 19 C 0.154 3.846 20 Cl -0.042 7.042 21 N -0.504 5.504 22 H 0.250 0.750 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.402 0.598 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.152 0.848 29 H 0.183 0.817 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.306 -8.840 -6.822 14.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.245 4.245 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.220 1.220 6 H -0.228 1.228 7 C -0.389 4.389 8 H 0.110 0.890 9 N -0.288 5.288 10 C 0.065 3.935 11 C 0.326 3.674 12 O -0.442 6.442 13 O -0.346 6.346 14 C 0.066 3.934 15 C -0.010 4.010 16 C -0.178 4.178 17 C -0.080 4.080 18 C -0.179 4.179 19 C -0.011 4.011 20 Cl -0.014 7.014 21 N -0.217 5.217 22 H 0.059 0.941 23 H 0.108 0.892 24 H 0.090 0.910 25 H 0.261 0.739 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.170 0.830 29 H 0.200 0.800 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.644 -8.943 -6.951 14.249 hybrid contribution -0.121 1.090 0.635 1.268 sum 8.523 -7.853 -6.315 13.198 Atomic orbital electron populations 1.70038 1.06618 1.25774 1.55296 1.25591 0.95924 1.01448 1.01555 0.85145 0.78965 0.79606 0.76279 1.18372 1.21957 1.22842 1.19667 0.95927 0.85448 1.37888 0.89049 1.43948 1.23794 1.01755 1.59317 1.20116 0.81245 1.01768 0.90340 1.25268 0.84153 0.68829 0.89197 1.90472 1.86641 1.47732 1.19356 1.84555 1.17539 1.85676 1.46790 1.19763 0.93950 0.86651 0.92994 1.22223 0.94518 0.91547 0.92711 1.22289 0.93206 1.00288 1.02025 1.21998 1.02059 0.93012 0.90907 1.22098 0.93268 1.01505 1.01074 1.21963 0.90633 0.98157 0.90333 1.98373 1.88415 1.78390 1.36181 1.66704 1.40863 1.12571 1.01539 0.94098 0.89183 0.90970 0.73948 0.90193 0.93373 0.83036 0.80003 0.81110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.08 9.31 21.65 0.20 -52.88 16 2 C -0.05 -2.68 4.86 84.86 0.41 -2.27 16 3 Si 0.97 43.33 29.61 68.60 2.03 45.36 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.26 -13.35 9.66 84.03 0.81 -12.54 16 8 H 0.09 4.38 7.92 -2.91 -0.02 4.36 16 9 N -0.57 -27.43 2.01 -710.67 -1.43 -28.86 16 10 C 0.19 9.47 5.49 85.63 0.47 9.94 16 11 C 0.48 23.99 6.55 71.24 0.47 24.46 16 12 O -0.55 -30.82 16.89 21.98 0.37 -30.44 16 13 O -0.53 -22.22 13.42 -51.41 -0.69 -22.91 16 14 C 0.19 7.87 5.94 85.63 0.51 8.38 16 15 C 0.13 4.56 6.36 42.54 0.27 4.83 16 16 C -0.16 -4.38 9.72 22.36 0.22 -4.17 16 17 C -0.05 -1.14 10.17 22.46 0.23 -0.91 16 18 C -0.16 -3.54 9.88 22.39 0.22 -3.32 16 19 C 0.15 4.53 7.27 84.70 0.62 5.15 16 20 Cl -0.04 -1.10 29.11 -2.72 -0.08 -1.18 16 21 N -0.50 -18.02 10.25 -174.83 -1.79 -19.82 16 22 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 23 H 0.09 4.77 6.35 -2.39 -0.02 4.76 16 24 H 0.07 3.26 8.12 -2.39 -0.02 3.24 16 25 H 0.40 13.05 9.10 -74.06 -0.67 12.38 16 26 H 0.08 3.09 7.94 -2.38 -0.02 3.07 16 27 H 0.05 2.03 8.07 -2.38 -0.02 2.01 16 28 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 29 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -68.47 287.83 3.34 -65.13 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.51 Total: 16.05 kcal Atomic # 6 Polarization: 25.34 SS G_CDS: 4.22 Total: 29.56 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -3.02 Total: -101.56 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -0.32 Total: -53.36 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -68.47 3.34 -65.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067288.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.978 kcal (2) G-P(sol) polarization free energy of solvation -68.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds