Wall clock time and date at job start Mon Mar 30 2020 00:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99915 * 2 1 4 4 H 1.48495 * 109.47541 * 240.00213 * 3 2 1 5 5 H 1.48508 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46915 * 119.99560 * 3 2 1 7 7 C 1.38811 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99642 * 205.47589 * 7 2 1 9 9 N 1.36933 * 120.00362 * 25.46497 * 7 2 1 10 10 C 1.46504 * 119.99511 * 8.02936 * 9 7 2 11 11 C 1.50699 * 109.47417 * 270.32527 * 10 9 7 12 12 O 1.20825 * 119.99572 * 359.97438 * 11 10 9 13 13 O 1.34229 * 120.00041 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00376 * 188.02645 * 9 7 2 15 15 C 1.50702 * 109.46894 * 90.00452 * 14 9 7 16 16 C 1.38708 * 120.77813 * 269.97669 * 15 14 9 17 17 C 1.38149 * 119.19210 * 180.02562 * 16 15 14 18 18 N 1.31902 * 120.78260 * 0.02562 * 17 16 15 19 19 C 1.31957 * 121.70676 * 359.67829 * 18 17 16 20 20 Cl 1.73600 * 119.63672 * 180.29256 * 19 18 17 21 21 C 1.38396 * 120.72702 * 0.58526 * 19 18 17 22 22 H 0.97002 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47200 * 30.33029 * 10 9 7 24 24 H 1.09005 * 109.47148 * 150.32485 * 10 9 7 25 25 H 0.96704 * 116.99614 * 180.02562 * 13 11 10 26 26 H 1.08996 * 109.47303 * 330.00186 * 14 9 7 27 27 H 1.08998 * 109.47393 * 210.00521 * 14 9 7 28 28 H 1.07997 * 120.40941 * 0.02562 * 16 15 14 29 29 H 1.07996 * 119.60925 * 180.02562 * 17 16 15 30 30 H 1.07997 * 120.42303 * 179.72855 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0116 -1.2476 0.4018 9 7 1.4255 -2.3302 -0.5109 10 6 0.1435 -2.2367 -1.2137 11 6 -0.9836 -2.3957 -0.2261 12 8 -0.7408 -2.5697 0.9447 13 8 -2.2571 -2.3449 -0.6472 14 6 2.0819 -3.6305 -0.3542 15 6 1.6195 -4.2754 0.9269 16 6 2.2979 -4.0567 2.1168 17 6 1.8458 -4.6648 3.2719 18 7 0.7830 -5.4458 3.2521 19 6 0.1094 -5.6723 2.1402 20 17 -1.2864 -6.7037 2.1771 21 6 0.5070 -5.1013 0.9438 22 1 -0.4850 0.8400 0.0004 23 1 0.0659 -1.2645 -1.7002 24 1 0.0824 -3.0246 -1.9646 25 1 -2.9458 -2.4517 0.0233 26 1 3.1623 -3.4905 -0.3212 27 1 1.8242 -4.2716 -1.1973 28 1 3.1690 -3.4187 2.1401 29 1 2.3686 -4.4988 4.2022 30 1 -0.0454 -5.2934 0.0359 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067331.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:46 Heat of formation + Delta-G solvation = -32.172209 kcal Electronic energy + Delta-G solvation = -19028.966913 eV Core-core repulsion = 15851.340633 eV Total energy + Delta-G solvation = -3177.626280 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.70004 -38.63915 -36.34289 -35.93458 -34.40628 -32.88689 -30.88809 -30.47311 -27.73523 -26.20544 -23.12603 -22.90082 -21.24601 -20.06449 -17.09779 -16.77352 -16.29257 -16.00656 -15.45799 -15.29651 -15.01871 -14.17130 -13.90395 -13.68599 -13.48380 -13.31792 -12.68165 -11.83930 -11.62782 -11.41334 -11.34506 -11.10521 -11.02499 -10.87582 -10.64964 -10.35244 -10.13128 -10.05534 -9.35382 -9.13605 -8.97254 -8.62288 -8.42208 -7.35014 -6.10861 -3.36646 1.53396 1.76439 2.24417 3.27224 3.34463 3.35100 3.90329 4.13075 4.30766 4.50280 4.92912 5.09310 5.26160 5.36798 5.49143 5.62384 5.69602 5.99043 6.12448 6.20404 6.31819 6.42355 6.84807 6.89866 6.94175 7.08807 7.52481 7.87497 7.95482 8.22620 8.82393 9.39499 9.55109 9.90622 10.99755 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.007335 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.456231 B = 3816.634979 C = 4434.353255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.004 3.996 3 Si 0.913 3.087 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.085 0.915 9 N -0.555 5.555 10 C 0.185 3.815 11 C 0.475 3.525 12 O -0.506 6.506 13 O -0.545 6.545 14 C 0.173 3.827 15 C -0.021 4.021 16 C -0.150 4.150 17 C 0.108 3.892 18 N -0.497 5.497 19 C 0.176 3.824 20 Cl -0.059 7.059 21 C -0.132 4.132 22 H 0.261 0.739 23 H 0.116 0.884 24 H 0.054 0.946 25 H 0.380 0.620 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.134 0.866 29 H 0.153 0.847 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.487 -8.175 -1.659 8.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.194 4.194 3 Si 0.742 3.258 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.103 0.897 9 N -0.272 5.272 10 C 0.056 3.944 11 C 0.314 3.686 12 O -0.391 6.391 13 O -0.356 6.356 14 C 0.046 3.954 15 C -0.033 4.033 16 C -0.171 4.171 17 C -0.048 4.048 18 N -0.210 5.210 19 C 0.012 3.988 20 Cl -0.030 7.030 21 C -0.154 4.154 22 H 0.071 0.929 23 H 0.134 0.866 24 H 0.072 0.928 25 H 0.236 0.764 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.151 0.849 29 H 0.171 0.829 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.391 -8.467 -0.887 8.626 hybrid contribution -0.343 1.364 0.277 1.433 sum 1.047 -7.103 -0.610 7.206 Atomic orbital electron populations 1.69836 1.05387 1.26387 1.52435 1.24819 0.95226 0.98741 1.00650 0.86188 0.78896 0.82493 0.78217 1.20715 1.21616 1.20879 1.19298 0.97146 0.84811 1.37406 0.89744 1.44585 1.18765 1.01786 1.62109 1.20540 0.80868 1.02614 0.90420 1.25088 0.82002 0.70402 0.91130 1.90556 1.83883 1.45145 1.19477 1.84612 1.18495 1.86598 1.45881 1.20202 0.97720 0.86650 0.90798 1.21465 0.92749 0.89996 0.99106 1.21950 1.01846 1.00214 0.93103 1.22395 0.91641 0.92643 0.98110 1.66803 1.07917 1.17505 1.28736 1.21355 0.91074 0.95593 0.90735 1.98347 1.39809 1.66210 1.98681 1.21404 0.98089 0.98817 0.97124 0.92883 0.86640 0.92839 0.76440 0.90896 0.92202 0.84856 0.82936 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.09 8.97 55.49 0.50 -23.59 16 2 C 0.00 0.11 4.89 -17.43 -0.09 0.03 16 3 Si 0.91 20.40 29.62 -169.99 -5.04 15.37 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.26 -6.33 9.70 -15.06 -0.15 -6.48 16 8 H 0.08 2.00 7.93 -52.48 -0.42 1.58 16 9 N -0.55 -12.21 2.07 -175.98 -0.36 -12.58 16 10 C 0.18 3.99 5.59 -5.19 -0.03 3.96 16 11 C 0.47 10.88 6.21 36.01 0.22 11.10 16 12 O -0.51 -13.11 14.22 -18.75 -0.27 -13.38 16 13 O -0.55 -10.97 13.42 -39.26 -0.53 -11.49 16 14 C 0.17 3.10 5.88 -5.19 -0.03 3.07 16 15 C -0.02 -0.40 4.52 -104.33 -0.47 -0.87 16 16 C -0.15 -2.69 9.82 -39.44 -0.39 -3.08 16 17 C 0.11 1.90 11.18 -17.55 -0.20 1.70 16 18 N -0.50 -9.62 10.34 -10.36 -0.11 -9.72 16 19 C 0.18 3.34 7.27 -17.44 -0.13 3.22 16 20 Cl -0.06 -0.98 29.11 -51.86 -1.51 -2.49 16 21 C -0.13 -2.46 7.82 -39.40 -0.31 -2.77 16 22 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 23 H 0.12 2.73 6.30 -51.93 -0.33 2.40 16 24 H 0.05 0.97 7.89 -51.93 -0.41 0.56 16 25 H 0.38 6.35 9.10 45.56 0.41 6.76 16 26 H 0.07 1.20 7.99 -51.93 -0.41 0.78 16 27 H 0.06 0.92 7.85 -51.93 -0.41 0.51 16 28 H 0.13 2.18 8.06 -52.49 -0.42 1.75 16 29 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 281.50 15.07 4.24 4.24 Total: -1.00 -30.64 281.50 -6.59 -37.23 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -1.96 Total: 6.51 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -1.56 Total: 9.89 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.03 Total: -45.89 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.79 Total: -24.87 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.04 Total: 15.37 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.51 Total: -2.49 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.64 -6.59 -37.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067331.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.062 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds