Wall clock time and date at job start Mon Mar 30 2020 00:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99915 * 2 1 4 4 H 1.48495 * 109.47541 * 240.00213 * 3 2 1 5 5 H 1.48508 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46915 * 119.99560 * 3 2 1 7 7 C 1.38811 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99642 * 205.47589 * 7 2 1 9 9 N 1.36933 * 120.00362 * 25.46497 * 7 2 1 10 10 C 1.46504 * 119.99511 * 8.02936 * 9 7 2 11 11 C 1.50699 * 109.47417 * 270.32527 * 10 9 7 12 12 O 1.20825 * 119.99572 * 359.97438 * 11 10 9 13 13 O 1.34229 * 120.00041 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00376 * 188.02645 * 9 7 2 15 15 C 1.50702 * 109.46894 * 90.00452 * 14 9 7 16 16 C 1.38708 * 120.77813 * 269.97669 * 15 14 9 17 17 C 1.38149 * 119.19210 * 180.02562 * 16 15 14 18 18 N 1.31902 * 120.78260 * 0.02562 * 17 16 15 19 19 C 1.31957 * 121.70676 * 359.67829 * 18 17 16 20 20 Cl 1.73600 * 119.63672 * 180.29256 * 19 18 17 21 21 C 1.38396 * 120.72702 * 0.58526 * 19 18 17 22 22 H 0.97002 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47200 * 30.33029 * 10 9 7 24 24 H 1.09005 * 109.47148 * 150.32485 * 10 9 7 25 25 H 0.96704 * 116.99614 * 180.02562 * 13 11 10 26 26 H 1.08996 * 109.47303 * 330.00186 * 14 9 7 27 27 H 1.08998 * 109.47393 * 210.00521 * 14 9 7 28 28 H 1.07997 * 120.40941 * 0.02562 * 16 15 14 29 29 H 1.07996 * 119.60925 * 180.02562 * 17 16 15 30 30 H 1.07997 * 120.42303 * 179.72855 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0116 -1.2476 0.4018 9 7 1.4255 -2.3302 -0.5109 10 6 0.1435 -2.2367 -1.2137 11 6 -0.9836 -2.3957 -0.2261 12 8 -0.7408 -2.5697 0.9447 13 8 -2.2571 -2.3449 -0.6472 14 6 2.0819 -3.6305 -0.3542 15 6 1.6195 -4.2754 0.9269 16 6 2.2979 -4.0567 2.1168 17 6 1.8458 -4.6648 3.2719 18 7 0.7830 -5.4458 3.2521 19 6 0.1094 -5.6723 2.1402 20 17 -1.2864 -6.7037 2.1771 21 6 0.5070 -5.1013 0.9438 22 1 -0.4850 0.8400 0.0004 23 1 0.0659 -1.2645 -1.7002 24 1 0.0824 -3.0246 -1.9646 25 1 -2.9458 -2.4517 0.0233 26 1 3.1623 -3.4905 -0.3212 27 1 1.8242 -4.2716 -1.1973 28 1 3.1690 -3.4187 2.1401 29 1 2.3686 -4.4988 4.2022 30 1 -0.0454 -5.2934 0.0359 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067331.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:46 Heat of formation + Delta-G solvation = -51.484653 kcal Electronic energy + Delta-G solvation = -19029.804363 eV Core-core repulsion = 15851.340633 eV Total energy + Delta-G solvation = -3178.463730 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.12336 -40.34376 -37.81284 -37.44457 -36.14898 -34.47492 -32.58303 -31.85378 -29.37703 -27.84926 -24.70844 -24.38234 -22.74833 -21.74121 -18.82930 -18.45046 -17.77389 -17.45644 -17.13618 -16.82983 -16.59483 -15.91860 -15.39029 -15.27709 -14.99732 -14.87623 -14.16932 -13.45134 -13.30574 -12.98341 -12.88004 -12.62440 -12.52413 -12.33457 -12.21667 -12.05746 -11.90158 -11.81063 -11.06995 -10.67219 -10.47524 -10.37220 -9.80090 -9.10862 -7.98079 -5.23567 0.13836 0.35830 0.87006 1.50764 1.54429 1.59706 2.15254 2.48140 2.80113 2.86047 3.25822 3.59436 3.69385 3.95905 4.11836 4.25273 4.33174 4.60542 4.68938 4.77394 4.97725 5.01103 5.20742 5.26240 5.50139 5.65705 5.72596 6.16480 6.24505 6.83223 6.99760 7.64704 7.83784 8.11450 9.10682 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.007335 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.456231 B = 3816.634979 C = 4434.353255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.047 4.047 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.305 1.305 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.090 0.910 9 N -0.566 5.566 10 C 0.183 3.817 11 C 0.477 3.523 12 O -0.540 6.540 13 O -0.541 6.541 14 C 0.170 3.830 15 C -0.031 4.031 16 C -0.158 4.158 17 C 0.103 3.897 18 N -0.515 5.515 19 C 0.159 3.841 20 Cl -0.045 7.045 21 C -0.136 4.136 22 H 0.248 0.752 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.395 0.605 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.184 0.816 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 -8.930 -1.971 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.242 4.242 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.232 1.232 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.108 0.892 9 N -0.285 5.285 10 C 0.054 3.946 11 C 0.318 3.682 12 O -0.428 6.428 13 O -0.352 6.352 14 C 0.045 3.955 15 C -0.042 4.042 16 C -0.179 4.179 17 C -0.053 4.053 18 N -0.228 5.228 19 C -0.004 4.004 20 Cl -0.017 7.017 21 C -0.158 4.158 22 H 0.058 0.942 23 H 0.111 0.889 24 H 0.108 0.892 25 H 0.253 0.747 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.165 0.835 29 H 0.201 0.799 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.240 -9.257 -1.214 9.601 hybrid contribution -0.613 1.468 0.388 1.638 sum 1.627 -7.789 -0.827 8.000 Atomic orbital electron populations 1.69984 1.06380 1.25721 1.55064 1.25410 0.95768 1.01123 1.01904 0.85343 0.77463 0.79385 0.78206 1.19815 1.23190 1.21034 1.19591 0.97368 0.85795 1.35501 0.89210 1.44610 1.18922 1.02809 1.62110 1.20546 0.80620 1.02719 0.90726 1.25325 0.82772 0.69310 0.90792 1.90536 1.84520 1.46889 1.20823 1.84559 1.18251 1.86080 1.46311 1.20420 0.98228 0.85308 0.91546 1.21587 0.92825 0.90333 0.99482 1.22235 1.02332 1.00211 0.93123 1.22936 0.91209 0.91751 0.99370 1.66875 1.08650 1.18221 1.29082 1.21621 0.91697 0.96121 0.90988 1.98342 1.38993 1.65701 1.98669 1.21537 0.98122 0.98759 0.97405 0.94217 0.88874 0.89159 0.74709 0.89304 0.89376 0.83467 0.79917 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.00 8.97 21.65 0.19 -49.81 16 2 C -0.05 -2.37 4.89 84.86 0.41 -1.96 16 3 Si 0.97 41.95 29.62 68.60 2.03 43.98 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.25 -12.08 9.70 84.03 0.81 -11.26 16 8 H 0.09 4.09 7.93 -2.91 -0.02 4.06 16 9 N -0.57 -23.90 2.07 -710.69 -1.47 -25.37 16 10 C 0.18 7.64 5.59 85.63 0.48 8.12 16 11 C 0.48 21.38 6.21 71.24 0.44 21.83 16 12 O -0.54 -27.61 14.22 21.97 0.31 -27.30 16 13 O -0.54 -21.11 13.42 -51.41 -0.69 -21.80 16 14 C 0.17 5.66 5.88 85.63 0.50 6.16 16 15 C -0.03 -1.09 4.52 -19.67 -0.09 -1.18 16 16 C -0.16 -5.36 9.82 22.36 0.22 -5.14 16 17 C 0.10 3.43 11.18 84.66 0.95 4.38 16 18 N -0.52 -19.20 10.34 -186.69 -1.93 -21.13 16 19 C 0.16 5.82 7.27 84.71 0.62 6.44 16 20 Cl -0.05 -1.45 29.11 -2.72 -0.08 -1.53 16 21 C -0.14 -4.83 7.82 22.38 0.18 -4.66 16 22 H 0.25 13.54 8.31 -92.71 -0.77 12.77 16 23 H 0.09 4.36 6.30 -2.39 -0.02 4.34 16 24 H 0.09 3.03 7.89 -2.38 -0.02 3.01 16 25 H 0.40 12.76 9.10 -74.05 -0.67 12.09 16 26 H 0.09 2.65 7.99 -2.39 -0.02 2.63 16 27 H 0.09 2.41 7.85 -2.39 -0.02 2.39 16 28 H 0.15 4.47 8.06 -2.91 -0.02 4.44 16 29 H 0.18 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -64.05 281.50 3.40 -60.65 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.51 Total: 19.59 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 4.52 Total: 22.72 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -3.21 Total: -96.31 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -0.38 Total: -49.10 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -64.05 3.40 -60.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067331.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.162 kcal (2) G-P(sol) polarization free energy of solvation -64.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds