Wall clock time and date at job start Mon Mar 30 2020 00:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99610 * 2 1 4 4 H 1.48501 * 109.47219 * 275.34181 * 3 2 1 5 5 H 1.48493 * 109.47255 * 35.34480 * 3 2 1 6 6 H 1.48499 * 109.46721 * 155.34657 * 3 2 1 7 7 C 1.38812 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99822 * 335.67600 * 7 2 1 9 9 N 1.36935 * 119.99666 * 155.67666 * 7 2 1 10 10 C 1.46494 * 120.00208 * 324.79130 * 9 7 2 11 11 C 1.50697 * 109.47807 * 264.77747 * 10 9 7 12 12 O 1.20828 * 119.99659 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00722 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99792 * 144.79922 * 9 7 2 15 15 C 1.50702 * 109.47113 * 275.04702 * 14 9 7 16 16 C 1.38651 * 120.79392 * 97.05222 * 15 14 9 17 17 C 1.38182 * 119.17765 * 180.02562 * 16 15 14 18 18 N 1.31885 * 120.79307 * 0.02562 * 17 16 15 19 19 C 1.31839 * 121.73951 * 359.97438 * 18 17 16 20 20 C 1.38355 * 120.74702 * 0.02562 * 19 18 17 21 21 Cl 1.73589 * 120.43549 * 179.97438 * 20 19 18 22 22 H 0.96999 * 120.00407 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47148 * 24.78162 * 10 9 7 24 24 H 1.08999 * 109.47015 * 144.77653 * 10 9 7 25 25 H 0.96698 * 117.00738 * 179.97438 * 13 11 10 26 26 H 1.08994 * 109.47120 * 155.04619 * 14 9 7 27 27 H 1.09004 * 109.47270 * 35.04744 * 14 9 7 28 28 H 1.08001 * 120.41254 * 0.04357 * 16 15 14 29 29 H 1.07999 * 119.60781 * 179.72093 * 17 16 15 30 30 H 1.08001 * 119.62845 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3847 2.1117 -1.3940 5 1 1.5086 2.6174 0.8099 6 1 3.5996 1.4103 0.5840 7 6 2.0103 -1.2021 0.0005 8 1 1.5422 -2.0958 0.3862 9 7 3.2885 -1.2549 -0.4879 10 6 3.6714 -0.4206 -1.6296 11 6 3.5417 -1.2188 -2.9012 12 8 3.1681 -2.3671 -2.8582 13 8 3.8420 -0.6546 -4.0814 14 6 4.2730 -2.1458 0.1312 15 6 4.9054 -1.4533 1.3108 16 6 4.4456 -1.6824 2.5986 17 6 5.0497 -1.0291 3.6558 18 7 6.0515 -0.1960 3.4511 19 6 6.5155 0.0466 2.2411 20 6 5.9610 -0.5706 1.1340 21 17 6.5779 -0.2446 -0.4555 22 1 -0.4851 0.8400 -0.0004 23 1 3.0175 0.4501 -1.6788 24 1 4.7041 -0.0930 -1.5100 25 1 3.7437 -1.2062 -4.8695 26 1 5.0431 -2.3986 -0.5975 27 1 3.7778 -3.0569 0.4673 28 1 3.6256 -2.3632 2.7734 29 1 4.6942 -1.1989 4.6613 30 1 7.3372 0.7356 2.1126 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067522.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:48 Heat of formation + Delta-G solvation = -30.128439 kcal Electronic energy + Delta-G solvation = -18902.117008 eV Core-core repulsion = 15724.579352 eV Total energy + Delta-G solvation = -3177.537655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.99336 -39.39415 -36.62958 -36.19196 -35.15606 -32.86741 -31.52480 -30.74825 -28.12120 -26.46953 -23.25809 -23.11361 -21.69070 -20.39514 -17.48813 -17.22495 -16.68918 -16.39080 -15.86983 -15.59012 -15.50362 -14.68006 -14.55400 -13.72470 -13.61123 -13.07797 -13.04577 -12.51591 -12.35227 -12.07589 -11.86333 -11.57627 -11.06050 -10.90040 -10.83739 -10.62881 -10.19950 -9.89514 -9.77390 -9.33818 -9.22449 -8.76543 -8.67770 -7.29264 -6.24001 -3.65373 1.20921 1.45545 2.24382 2.98898 3.13710 3.34155 3.36663 3.67492 3.95944 4.29251 4.62331 4.79862 4.93414 5.00032 5.19640 5.27816 5.61530 5.76066 5.85940 5.93906 6.03923 6.07293 6.19074 6.37793 6.58406 6.80173 7.13250 7.68092 8.06440 8.11076 8.55023 8.72941 9.41263 9.73821 10.89829 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.010237 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.970493 B = 2734.521385 C = 3481.860326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.044 3.956 3 Si 0.855 3.145 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.260 1.260 7 C -0.275 4.275 8 H 0.089 0.911 9 N -0.558 5.558 10 C 0.126 3.874 11 C 0.445 3.555 12 O -0.504 6.504 13 O -0.534 6.534 14 C 0.178 3.822 15 C -0.032 4.032 16 C -0.138 4.138 17 C 0.094 3.906 18 N -0.484 5.484 19 C 0.105 3.895 20 C -0.086 4.086 21 Cl -0.062 7.062 22 H 0.268 0.732 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.391 0.609 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.145 0.855 29 H 0.158 0.842 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.872 -0.761 0.620 11.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.159 4.159 3 Si 0.683 3.317 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.184 1.184 7 C -0.403 4.403 8 H 0.106 0.894 9 N -0.277 5.277 10 C -0.002 4.002 11 C 0.283 3.717 12 O -0.390 6.390 13 O -0.345 6.345 14 C 0.053 3.947 15 C -0.043 4.043 16 C -0.159 4.159 17 C -0.062 4.062 18 N -0.194 5.194 19 C -0.053 4.053 20 C -0.115 4.115 21 Cl -0.034 7.034 22 H 0.078 0.922 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.248 0.752 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.162 0.838 29 H 0.175 0.825 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 12.025 -0.329 1.583 12.133 hybrid contribution -0.233 0.388 -1.462 1.531 sum 11.792 0.060 0.121 11.793 Atomic orbital electron populations 1.69878 1.05948 1.27217 1.48785 1.25428 0.95091 0.97691 0.97669 0.87258 0.81563 0.85152 0.77697 1.20703 1.21961 1.18408 1.18811 0.86754 0.95088 1.39615 0.89386 1.43769 1.08788 1.48550 1.26574 1.21547 1.02707 0.93859 0.82119 1.26021 0.72622 0.87675 0.85340 1.90612 1.42021 1.19304 1.87077 1.84672 1.81989 1.50020 1.17854 1.20108 0.91651 0.93046 0.89943 1.21392 0.90757 0.94412 0.97785 1.22083 1.00566 1.01559 0.91705 1.22796 0.91705 0.91996 0.99674 1.67741 1.12810 1.15830 1.23004 1.22576 0.98790 0.97434 0.86514 1.21945 0.99824 1.02684 0.87089 1.98315 1.85948 1.94492 1.24596 0.92200 0.88599 0.88759 0.75178 0.91704 0.90662 0.83751 0.82512 0.82641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.66 13.97 55.49 0.78 -24.88 16 2 C 0.04 1.21 5.25 -17.43 -0.09 1.11 16 3 Si 0.86 20.83 25.09 -169.99 -4.26 16.57 16 4 H -0.28 -6.61 6.64 56.52 0.38 -6.23 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.27 -7.23 9.91 -15.06 -0.15 -7.38 16 8 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 9 N -0.56 -12.63 1.60 -175.99 -0.28 -12.91 16 10 C 0.13 2.72 4.91 -5.20 -0.03 2.70 16 11 C 0.44 9.26 8.39 36.00 0.30 9.56 16 12 O -0.50 -11.79 17.17 -18.75 -0.32 -12.11 16 13 O -0.53 -9.00 13.42 -39.24 -0.53 -9.53 16 14 C 0.18 3.38 5.40 -5.19 -0.03 3.35 16 15 C -0.03 -0.56 5.47 -104.28 -0.57 -1.13 16 16 C -0.14 -2.21 9.79 -39.45 -0.39 -2.60 16 17 C 0.09 1.40 11.18 -17.55 -0.20 1.20 16 18 N -0.48 -7.76 10.36 -13.22 -0.14 -7.90 16 19 C 0.10 1.62 10.99 -17.51 -0.19 1.43 16 20 C -0.09 -1.43 6.34 -39.35 -0.25 -1.68 16 21 Cl -0.06 -0.96 24.41 -51.86 -1.27 -2.22 16 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.10 2.24 3.37 -51.93 -0.18 2.07 16 24 H 0.10 1.83 4.39 -51.93 -0.23 1.60 16 25 H 0.39 4.69 9.10 45.56 0.41 5.11 16 26 H 0.06 1.15 7.22 -51.93 -0.38 0.78 16 27 H 0.08 1.39 8.00 -51.93 -0.42 0.97 16 28 H 0.14 2.11 8.06 -52.49 -0.42 1.68 16 29 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 277.14 15.07 4.18 4.18 Total: -1.00 -31.77 277.14 -5.06 -36.83 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -1.63 Total: 5.40 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.59 Total: 6.57 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.36 Total: -45.69 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.85 Total: -21.64 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.26 Total: 16.57 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.27 Total: -2.22 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.77 -5.06 -36.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067522.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.707 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds