Wall clock time and date at job start Mon Mar 30 2020 00:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99610 * 2 1 4 4 H 1.48501 * 109.47219 * 275.34181 * 3 2 1 5 5 H 1.48493 * 109.47255 * 35.34480 * 3 2 1 6 6 H 1.48499 * 109.46721 * 155.34657 * 3 2 1 7 7 C 1.38812 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99822 * 335.67600 * 7 2 1 9 9 N 1.36935 * 119.99666 * 155.67666 * 7 2 1 10 10 C 1.46494 * 120.00208 * 324.79130 * 9 7 2 11 11 C 1.50697 * 109.47807 * 264.77747 * 10 9 7 12 12 O 1.20828 * 119.99659 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00722 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99792 * 144.79922 * 9 7 2 15 15 C 1.50702 * 109.47113 * 275.04702 * 14 9 7 16 16 C 1.38651 * 120.79392 * 97.05222 * 15 14 9 17 17 C 1.38182 * 119.17765 * 180.02562 * 16 15 14 18 18 N 1.31885 * 120.79307 * 0.02562 * 17 16 15 19 19 C 1.31839 * 121.73951 * 359.97438 * 18 17 16 20 20 C 1.38355 * 120.74702 * 0.02562 * 19 18 17 21 21 Cl 1.73589 * 120.43549 * 179.97438 * 20 19 18 22 22 H 0.96999 * 120.00407 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47148 * 24.78162 * 10 9 7 24 24 H 1.08999 * 109.47015 * 144.77653 * 10 9 7 25 25 H 0.96698 * 117.00738 * 179.97438 * 13 11 10 26 26 H 1.08994 * 109.47120 * 155.04619 * 14 9 7 27 27 H 1.09004 * 109.47270 * 35.04744 * 14 9 7 28 28 H 1.08001 * 120.41254 * 0.04357 * 16 15 14 29 29 H 1.07999 * 119.60781 * 179.72093 * 17 16 15 30 30 H 1.08001 * 119.62845 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3847 2.1117 -1.3940 5 1 1.5086 2.6174 0.8099 6 1 3.5996 1.4103 0.5840 7 6 2.0103 -1.2021 0.0005 8 1 1.5422 -2.0958 0.3862 9 7 3.2885 -1.2549 -0.4879 10 6 3.6714 -0.4206 -1.6296 11 6 3.5417 -1.2188 -2.9012 12 8 3.1681 -2.3671 -2.8582 13 8 3.8420 -0.6546 -4.0814 14 6 4.2730 -2.1458 0.1312 15 6 4.9054 -1.4533 1.3108 16 6 4.4456 -1.6824 2.5986 17 6 5.0497 -1.0291 3.6558 18 7 6.0515 -0.1960 3.4511 19 6 6.5155 0.0466 2.2411 20 6 5.9610 -0.5706 1.1340 21 17 6.5779 -0.2446 -0.4555 22 1 -0.4851 0.8400 -0.0004 23 1 3.0175 0.4501 -1.6788 24 1 4.7041 -0.0930 -1.5100 25 1 3.7437 -1.2062 -4.8695 26 1 5.0431 -2.3986 -0.5975 27 1 3.7778 -3.0569 0.4673 28 1 3.6256 -2.3632 2.7734 29 1 4.6942 -1.1989 4.6613 30 1 7.3372 0.7356 2.1126 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067522.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:48 Heat of formation + Delta-G solvation = -51.931095 kcal Electronic energy + Delta-G solvation = -18903.062442 eV Core-core repulsion = 15724.579352 eV Total energy + Delta-G solvation = -3178.483089 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.31838 -40.94349 -38.08591 -37.60551 -36.76032 -34.49753 -33.29957 -31.95989 -29.74458 -28.19901 -24.79328 -24.46418 -23.17310 -22.01794 -19.10977 -19.06116 -18.13817 -17.75753 -17.32490 -17.12870 -16.85777 -16.44968 -16.15184 -15.09440 -14.91496 -14.79912 -14.62673 -14.25962 -13.87593 -13.57706 -13.34648 -12.95751 -12.72245 -12.55184 -12.40265 -12.22548 -11.91989 -11.69507 -11.53157 -10.82193 -10.61736 -10.46329 -9.90044 -9.13712 -8.31200 -5.70766 -0.01169 0.18031 0.99521 1.21035 1.29893 1.39462 1.46750 2.15906 2.30437 2.69257 2.97881 3.25926 3.51461 3.68276 3.79968 4.02154 4.16662 4.30149 4.39136 4.47044 4.58471 4.74083 4.83461 4.93776 5.27360 5.59841 5.69065 5.76740 6.07776 6.68026 6.86013 7.14302 7.41901 7.79299 8.87141 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.010237 C = 0.008040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.970493 B = 2734.521385 C = 3481.860326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.302 1.302 6 H -0.250 1.250 7 C -0.259 4.259 8 H 0.054 0.946 9 N -0.570 5.570 10 C 0.122 3.878 11 C 0.451 3.549 12 O -0.536 6.536 13 O -0.520 6.520 14 C 0.181 3.819 15 C -0.048 4.048 16 C -0.147 4.147 17 C 0.099 3.901 18 N -0.493 5.493 19 C 0.105 3.895 20 C -0.095 4.095 21 Cl -0.053 7.053 22 H 0.267 0.733 23 H 0.081 0.919 24 H 0.118 0.882 25 H 0.417 0.583 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.190 0.810 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.022 0.056 0.663 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.230 1.230 6 H -0.173 1.173 7 C -0.388 4.388 8 H 0.072 0.928 9 N -0.290 5.290 10 C -0.007 4.007 11 C 0.291 3.709 12 O -0.425 6.425 13 O -0.333 6.333 14 C 0.056 3.944 15 C -0.060 4.060 16 C -0.167 4.167 17 C -0.057 4.057 18 N -0.202 5.202 19 C -0.052 4.052 20 C -0.125 4.125 21 Cl -0.024 7.024 22 H 0.076 0.924 23 H 0.098 0.902 24 H 0.135 0.865 25 H 0.278 0.722 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.169 0.831 29 H 0.207 0.793 30 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 14.234 0.488 1.596 14.332 hybrid contribution -0.799 0.022 -1.525 1.722 sum 13.435 0.510 0.071 13.445 Atomic orbital electron populations 1.69990 1.07529 1.27755 1.52015 1.25909 0.95473 1.00541 0.98378 0.86346 0.80478 0.81285 0.78062 1.19491 1.23029 1.17312 1.18616 0.88241 0.93776 1.38155 0.92793 1.43745 1.08419 1.49056 1.27751 1.21563 1.03531 0.93213 0.82353 1.25662 0.71988 0.86942 0.86311 1.90612 1.43553 1.20570 1.87745 1.84569 1.80998 1.49900 1.17829 1.20072 0.91168 0.92329 0.90816 1.21270 0.91908 0.95043 0.97734 1.22287 1.00831 1.01932 0.91668 1.23295 0.90812 0.90804 1.00808 1.67842 1.13102 1.16055 1.23240 1.23015 0.99026 0.97236 0.85962 1.22065 0.99849 1.02675 0.87907 1.98309 1.85614 1.94423 1.24099 0.92398 0.90187 0.86482 0.72211 0.90639 0.90962 0.83101 0.79302 0.80037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.70 13.97 21.65 0.30 -55.40 16 2 C 0.00 -0.25 5.25 84.86 0.45 0.19 16 3 Si 0.91 42.91 25.09 68.60 1.72 44.63 16 4 H -0.27 -11.99 6.64 99.48 0.66 -11.33 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.25 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.26 -13.81 9.91 84.03 0.83 -12.97 16 8 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 9 N -0.57 -25.45 1.60 -710.70 -1.14 -26.59 16 10 C 0.12 5.04 4.91 85.63 0.42 5.46 16 11 C 0.45 18.04 8.39 71.23 0.60 18.64 16 12 O -0.54 -24.62 17.17 21.96 0.38 -24.25 16 13 O -0.52 -16.07 13.42 -51.34 -0.69 -16.75 16 14 C 0.18 6.71 5.40 85.63 0.46 7.17 16 15 C -0.05 -1.62 5.47 -19.65 -0.11 -1.73 16 16 C -0.15 -4.45 9.79 22.36 0.22 -4.23 16 17 C 0.10 2.67 11.18 84.67 0.95 3.61 16 18 N -0.49 -14.33 10.36 -195.75 -2.03 -16.36 16 19 C 0.11 2.95 10.99 84.72 0.93 3.88 16 20 C -0.10 -2.94 6.34 22.42 0.14 -2.80 16 21 Cl -0.05 -1.50 24.41 -2.72 -0.07 -1.56 16 22 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 23 H 0.08 3.62 3.37 -2.39 -0.01 3.61 16 24 H 0.12 4.26 4.39 -2.39 -0.01 4.25 16 25 H 0.42 8.69 9.10 -74.06 -0.67 8.02 16 26 H 0.08 2.59 7.22 -2.39 -0.02 2.57 16 27 H 0.07 2.67 8.00 -2.39 -0.02 2.65 16 28 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 29 H 0.19 3.74 8.06 -2.91 -0.02 3.71 16 30 H 0.18 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -68.02 277.14 3.85 -64.17 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.48 Total: 14.89 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 4.89 Total: 17.22 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -2.86 Total: -98.35 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.31 Total: -41.00 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.72 Total: 44.63 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.07 Total: -1.56 kcal Total: -68.02 3.85 -64.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067522.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.236 kcal (2) G-P(sol) polarization free energy of solvation -68.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds