Wall clock time and date at job start Mon Mar 30 2020 01:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33854 * 122.44681 * 2 1 4 4 S 1.70618 * 110.96344 * 179.74527 * 3 2 1 5 5 C 1.75832 * 91.56439 * 0.35276 * 4 3 2 6 6 C 1.46384 * 125.46522 * 179.91273 * 5 4 3 7 7 O 1.21631 * 120.00332 * 179.69024 * 6 5 4 8 8 O 1.34895 * 119.99992 * 359.69737 * 6 5 4 9 9 C 1.45206 * 117.00197 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47091 * 179.97438 * 9 8 6 11 11 O 1.42905 * 109.46911 * 65.00251 * 10 9 8 12 12 C 1.42897 * 114.00040 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47146 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00154 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99853 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00071 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99974 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47237 * 89.99097 * 17 15 13 19 19 H 1.48500 * 109.47140 * 209.99379 * 17 15 13 20 20 H 1.48503 * 109.47118 * 329.99685 * 17 15 13 21 21 C 1.36759 * 109.07070 * 359.64859 * 5 4 3 22 22 H 1.09004 * 109.47072 * 269.98189 * 1 2 3 23 23 H 1.08995 * 109.46910 * 29.98112 * 1 2 3 24 24 H 1.08999 * 109.47162 * 149.98016 * 1 2 3 25 25 H 1.07998 * 124.51880 * 0.05041 * 3 2 1 26 26 H 1.09001 * 109.47157 * 299.99606 * 9 8 6 27 27 H 1.09004 * 109.47122 * 59.99739 * 9 8 6 28 28 H 1.09003 * 109.47073 * 184.99607 * 10 9 8 29 29 H 1.08993 * 109.47403 * 305.00248 * 10 9 8 30 30 H 1.08999 * 109.47446 * 300.00155 * 12 11 10 31 31 H 1.09005 * 109.47036 * 60.00044 * 12 11 10 32 32 H 0.96998 * 120.00311 * 180.02562 * 16 15 13 33 33 H 1.08006 * 123.35177 * 180.28362 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2252 1.1296 0.0000 4 16 3.8972 0.7899 0.0071 5 6 3.5943 -0.9421 -0.0007 6 6 4.6225 -1.9841 -0.0012 7 8 4.2999 -3.1569 -0.0013 8 8 5.9278 -1.6437 -0.0015 9 6 6.8922 -2.7292 -0.0015 10 6 8.3093 -2.1524 -0.0025 11 8 8.5364 -1.4448 1.2182 12 6 9.8381 -0.8641 1.3198 13 6 9.9664 -0.1464 2.6386 14 1 9.1371 -0.1353 3.3303 15 6 11.1427 0.4960 2.9623 16 7 12.1528 0.4821 2.1203 17 14 11.3021 1.3850 4.5975 18 1 11.8229 0.4456 5.6230 19 1 12.2397 2.5271 4.4507 20 1 9.9702 1.8889 5.0188 21 6 2.2442 -1.1597 -0.0003 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 1.8026 2.1235 0.0008 26 1 6.7496 -3.3419 0.8887 27 1 6.7492 -3.3424 -0.8913 28 1 9.0318 -2.9637 -0.0919 29 1 8.4232 -1.4699 -0.8446 30 1 10.5920 -1.6488 1.2579 31 1 9.9841 -0.1549 0.5049 32 1 12.9804 0.9338 2.3481 33 1 1.8015 -2.1448 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837763282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:03 Heat of formation + Delta-G solvation = -108.969552 kcal Electronic energy + Delta-G solvation = -17438.333454 eV Core-core repulsion = 14362.961042 eV Total energy + Delta-G solvation = -3075.372413 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.23854 -38.43802 -36.98842 -35.94718 -32.77903 -31.47995 -30.03480 -28.08553 -26.96744 -25.17156 -22.48462 -22.11214 -20.98731 -19.22624 -18.53741 -16.93025 -16.50929 -16.42824 -16.03503 -15.35169 -14.79561 -14.52153 -14.23036 -14.15145 -13.51774 -13.38327 -13.00982 -12.69346 -12.42430 -12.21387 -12.17923 -11.93895 -11.44631 -10.99638 -10.91964 -10.85005 -10.76716 -10.51820 -10.39620 -10.05512 -9.13473 -9.08114 -8.88307 -8.57155 -8.21916 -6.12288 -4.13906 0.26631 1.35554 1.81524 2.06666 2.69998 2.89109 3.30120 3.35064 3.40712 4.32153 4.66520 4.72382 4.75298 4.93841 5.06025 5.21346 5.24363 5.30545 5.34933 5.45325 5.58417 5.64603 5.85500 5.92472 6.03477 6.10850 6.16126 6.50822 7.04802 7.39282 7.76353 7.78466 8.12098 8.51815 8.98753 9.50868 10.99290 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022335 B = 0.003860 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.354874 B = 7252.959610 C = 8137.339256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.126 4.126 3 C -0.245 4.245 4 S 0.275 5.725 5 C -0.259 4.259 6 C 0.538 3.462 7 O -0.507 6.507 8 O -0.338 6.338 9 C 0.077 3.923 10 C 0.061 3.939 11 O -0.391 6.391 12 C 0.194 3.806 13 C -0.515 4.515 14 H 0.067 0.933 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.908 3.092 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.048 4.048 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.170 0.830 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.006 0.994 31 H 0.007 0.993 32 H 0.264 0.736 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.156 -0.428 -7.104 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C -0.383 4.383 4 S 0.546 5.454 5 C -0.378 4.378 6 C 0.382 3.618 7 O -0.398 6.398 8 O -0.254 6.254 9 C 0.003 3.997 10 C -0.016 4.016 11 O -0.311 6.311 12 C 0.120 3.880 13 C -0.553 4.553 14 H 0.085 0.915 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.735 3.265 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.082 4.082 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.187 0.813 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.074 0.926 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.793 0.249 -6.968 20.045 hybrid contribution -0.814 -0.527 0.582 1.131 sum -19.607 -0.277 -6.387 20.623 Atomic orbital electron populations 1.20494 0.89377 1.02796 1.02434 1.18692 0.97939 0.91355 1.05909 1.25469 1.00169 1.03508 1.09141 1.83733 1.01001 0.96523 1.64189 1.23635 0.95900 0.97740 1.20498 1.19623 0.82224 0.86981 0.72940 1.90859 1.82956 1.19254 1.46771 1.86679 1.15087 1.40186 1.83432 1.23270 0.86098 0.87550 1.02774 1.22332 0.92047 0.96683 0.90567 1.87923 1.37410 1.70906 1.34835 1.20238 0.78063 0.92113 0.97561 1.21053 0.99555 1.32657 1.02051 0.91491 1.24947 0.95292 0.96396 0.97841 1.69957 1.04038 1.43879 1.35933 0.86330 0.78113 0.79069 0.82958 1.20456 1.21054 1.19575 1.20621 0.90417 1.00167 0.97018 0.91165 0.91509 0.91367 0.81282 0.90262 0.90208 0.91757 0.93119 0.97602 0.97469 0.92627 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.13 36.01 0.36 -0.25 16 2 C -0.13 -1.22 5.78 -106.46 -0.62 -1.84 16 3 C -0.24 -2.31 10.67 29.19 0.31 -1.99 16 4 S 0.27 3.27 22.92 -107.50 -2.46 0.80 16 5 C -0.26 -3.58 6.45 -36.84 -0.24 -3.82 16 6 C 0.54 8.84 7.92 34.01 0.27 9.11 16 7 O -0.51 -9.01 16.64 -19.37 -0.32 -9.33 16 8 O -0.34 -5.93 10.05 -43.81 -0.44 -6.37 16 9 C 0.08 1.25 5.86 37.16 0.22 1.46 16 10 C 0.06 1.13 6.33 37.16 0.24 1.36 16 11 O -0.39 -9.53 10.30 -38.79 -0.40 -9.93 16 12 C 0.19 5.33 5.69 36.00 0.20 5.53 16 13 C -0.51 -15.23 9.43 -34.44 -0.32 -15.56 16 14 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 17 Si 0.91 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.05 -0.56 9.79 -40.42 -0.40 -0.96 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 24 H 0.07 0.41 8.13 -51.93 -0.42 -0.02 16 25 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.15 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 313.04 15.07 4.72 4.72 Total: -1.00 -33.19 313.04 -7.45 -40.64 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: -4.19 Total: -5.85 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.07 Total: -5.41 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.74 Total: -26.08 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -1.16 Total: -25.64 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.46 Total: 0.80 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.19 -7.45 -40.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837763282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.327 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds