Wall clock time and date at job start Mon Mar 30 2020 01:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33854 * 122.44681 * 2 1 4 4 S 1.70618 * 110.96344 * 179.74527 * 3 2 1 5 5 C 1.75832 * 91.56439 * 0.35276 * 4 3 2 6 6 C 1.46384 * 125.46522 * 179.91273 * 5 4 3 7 7 O 1.21631 * 120.00332 * 179.69024 * 6 5 4 8 8 O 1.34895 * 119.99992 * 359.69737 * 6 5 4 9 9 C 1.45206 * 117.00197 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47091 * 179.97438 * 9 8 6 11 11 O 1.42905 * 109.46911 * 65.00251 * 10 9 8 12 12 C 1.42897 * 114.00040 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47146 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00154 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99853 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00071 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99974 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47237 * 89.99097 * 17 15 13 19 19 H 1.48500 * 109.47140 * 209.99379 * 17 15 13 20 20 H 1.48503 * 109.47118 * 329.99685 * 17 15 13 21 21 C 1.36759 * 109.07070 * 359.64859 * 5 4 3 22 22 H 1.09004 * 109.47072 * 269.98189 * 1 2 3 23 23 H 1.08995 * 109.46910 * 29.98112 * 1 2 3 24 24 H 1.08999 * 109.47162 * 149.98016 * 1 2 3 25 25 H 1.07998 * 124.51880 * 0.05041 * 3 2 1 26 26 H 1.09001 * 109.47157 * 299.99606 * 9 8 6 27 27 H 1.09004 * 109.47122 * 59.99739 * 9 8 6 28 28 H 1.09003 * 109.47073 * 184.99607 * 10 9 8 29 29 H 1.08993 * 109.47403 * 305.00248 * 10 9 8 30 30 H 1.08999 * 109.47446 * 300.00155 * 12 11 10 31 31 H 1.09005 * 109.47036 * 60.00044 * 12 11 10 32 32 H 0.96998 * 120.00311 * 180.02562 * 16 15 13 33 33 H 1.08006 * 123.35177 * 180.28362 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2252 1.1296 0.0000 4 16 3.8972 0.7899 0.0071 5 6 3.5943 -0.9421 -0.0007 6 6 4.6225 -1.9841 -0.0012 7 8 4.2999 -3.1569 -0.0013 8 8 5.9278 -1.6437 -0.0015 9 6 6.8922 -2.7292 -0.0015 10 6 8.3093 -2.1524 -0.0025 11 8 8.5364 -1.4448 1.2182 12 6 9.8381 -0.8641 1.3198 13 6 9.9664 -0.1464 2.6386 14 1 9.1371 -0.1353 3.3303 15 6 11.1427 0.4960 2.9623 16 7 12.1528 0.4821 2.1203 17 14 11.3021 1.3850 4.5975 18 1 11.8229 0.4456 5.6230 19 1 12.2397 2.5271 4.4507 20 1 9.9702 1.8889 5.0188 21 6 2.2442 -1.1597 -0.0003 22 1 -0.3633 -0.0003 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 1.8026 2.1235 0.0008 26 1 6.7496 -3.3419 0.8887 27 1 6.7492 -3.3424 -0.8913 28 1 9.0318 -2.9637 -0.0919 29 1 8.4232 -1.4699 -0.8446 30 1 10.5920 -1.6488 1.2579 31 1 9.9841 -0.1549 0.5049 32 1 12.9804 0.9338 2.3481 33 1 1.8015 -2.1448 0.0000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837763282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:03 Heat of formation + Delta-G solvation = -129.176121 kcal Electronic energy + Delta-G solvation = -17439.209677 eV Core-core repulsion = 14362.961042 eV Total energy + Delta-G solvation = -3076.248635 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.49790 -39.35860 -38.67264 -37.39028 -34.95630 -32.47589 -31.46029 -29.10821 -28.71684 -26.25386 -24.56287 -23.55768 -22.11928 -20.13767 -19.56953 -18.69927 -18.09219 -17.96217 -17.10228 -17.03849 -16.43129 -16.29877 -15.55312 -14.98484 -14.96284 -14.34639 -14.18942 -14.10338 -13.77267 -13.26204 -13.22865 -12.97291 -12.89324 -12.80099 -12.70692 -12.48683 -12.06857 -11.85104 -11.80414 -11.70618 -11.29455 -10.90787 -10.28845 -9.98761 -9.43612 -8.32913 -6.45132 -0.68640 0.43521 0.96106 1.12802 1.40211 1.42835 1.51159 1.55049 1.81697 2.34227 3.01035 3.03624 3.61424 3.88371 4.01395 4.06915 4.11779 4.33583 4.37568 4.46698 4.59842 4.66909 4.81655 4.84095 4.90001 5.03994 5.16011 5.21590 5.37050 5.45802 5.53638 5.94249 6.47026 6.52863 6.78382 7.26436 8.79331 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022335 B = 0.003860 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.354874 B = 7252.959610 C = 8137.339256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.133 4.133 3 C -0.219 4.219 4 S 0.245 5.755 5 C -0.298 4.298 6 C 0.537 3.463 7 O -0.531 6.531 8 O -0.356 6.356 9 C 0.079 3.921 10 C 0.054 3.946 11 O -0.410 6.410 12 C 0.208 3.792 13 C -0.551 4.551 14 H 0.059 0.941 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.982 3.018 18 H -0.268 1.268 19 H -0.272 1.272 20 H -0.265 1.265 21 C -0.035 4.035 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.202 0.798 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.057 0.943 30 H -0.007 1.007 31 H -0.010 1.010 32 H 0.272 0.728 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.819 0.562 -6.625 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C -0.357 4.357 4 S 0.516 5.484 5 C -0.416 4.416 6 C 0.384 3.616 7 O -0.423 6.423 8 O -0.272 6.272 9 C 0.006 3.994 10 C -0.023 4.023 11 O -0.330 6.330 12 C 0.133 3.867 13 C -0.589 4.589 14 H 0.078 0.922 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.805 3.195 18 H -0.193 1.193 19 H -0.197 1.197 20 H -0.190 1.190 21 C -0.070 4.070 22 H 0.097 0.903 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.219 0.781 26 H 0.092 0.908 27 H 0.130 0.870 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.011 0.989 31 H 0.008 0.992 32 H 0.080 0.920 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.466 1.229 -6.508 21.511 hybrid contribution -0.397 -0.843 0.349 0.995 sum -20.863 0.386 -6.159 21.757 Atomic orbital electron populations 1.20581 0.86805 1.04125 1.03404 1.19016 0.99619 0.90476 1.05357 1.25839 0.98275 1.05004 1.06556 1.83815 1.03655 0.95809 1.65120 1.23595 0.96039 0.97945 1.24050 1.20013 0.82033 0.87450 0.72149 1.90826 1.83057 1.20175 1.48265 1.86670 1.15982 1.40825 1.83740 1.23283 0.84724 0.87329 1.04087 1.22655 0.94110 0.97040 0.88461 1.87868 1.35685 1.71518 1.37952 1.19874 0.79168 0.91257 0.96357 1.21383 1.00121 1.34305 1.03069 0.92244 1.25934 0.94488 0.96674 1.01940 1.70053 1.04612 1.44209 1.37924 0.85200 0.78477 0.78026 0.77824 1.19294 1.19725 1.18962 1.20931 0.89758 1.01405 0.94922 0.90279 0.89760 0.90586 0.78053 0.90773 0.87012 0.89605 0.92457 0.98943 0.99220 0.91956 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.13 71.24 0.72 -0.19 16 2 C -0.13 -2.24 5.78 -21.06 -0.12 -2.37 16 3 C -0.22 -3.58 10.67 66.82 0.71 -2.87 16 4 S 0.25 5.75 22.92 -56.49 -1.29 4.45 16 5 C -0.30 -8.25 6.45 24.04 0.16 -8.10 16 6 C 0.54 17.99 7.92 69.94 0.55 18.54 16 7 O -0.53 -19.08 16.64 19.41 0.32 -18.76 16 8 O -0.36 -12.77 10.05 -55.43 -0.56 -13.33 16 9 C 0.08 2.57 5.86 71.98 0.42 3.00 16 10 C 0.05 2.01 6.33 71.98 0.46 2.46 16 11 O -0.41 -20.53 10.30 -145.57 -1.50 -22.03 16 12 C 0.21 11.77 5.69 71.23 0.41 12.17 16 13 C -0.55 -33.24 9.43 25.60 0.24 -32.99 16 14 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 15 C 0.01 0.48 5.46 84.66 0.46 0.95 16 16 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 17 Si 0.98 44.50 29.54 68.60 2.03 46.52 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 C -0.04 -0.78 9.79 21.73 0.21 -0.56 16 22 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 23 H 0.08 0.58 8.12 -2.39 -0.02 0.56 16 24 H 0.08 0.67 8.13 -2.39 -0.02 0.65 16 25 H 0.20 1.93 8.06 -2.91 -0.02 1.91 16 26 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.11 2.92 8.14 -2.38 -0.02 2.90 16 28 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 32 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -72.09 313.04 4.61 -67.48 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: 1.11 Total: 1.03 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 4.22 Total: -9.96 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.28 Total: -55.42 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: -1.73 Total: -54.11 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.29 Total: 4.45 kcal Total: -72.09 4.61 -67.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837763282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.696 kcal (2) G-P(sol) polarization free energy of solvation -72.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds