Wall clock time and date at job start Mon Mar 30 2020 00:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47179 * 2 1 4 4 O 1.42900 * 109.47247 * 239.99855 * 2 1 3 5 5 C 1.35898 * 117.00048 * 84.83019 * 4 2 1 6 6 C 1.38755 * 120.05007 * 354.62573 * 5 4 2 7 7 C 1.38131 * 119.97223 * 180.02562 * 6 5 4 8 8 C 1.38271 * 120.06503 * 0.26062 * 7 6 5 9 9 C 1.38361 * 120.09824 * 359.48238 * 8 7 6 10 10 Cl 1.73600 * 119.98721 * 180.27714 * 9 8 7 11 11 C 1.38284 * 120.02922 * 0.51705 * 9 8 7 12 12 C 1.50694 * 109.46640 * 119.99651 * 2 1 3 13 13 O 1.21221 * 119.99651 * 120.00572 * 12 2 1 14 14 O 1.34307 * 120.00382 * 299.99756 * 12 2 1 15 15 C 1.34928 * 117.00243 * 180.02562 * 14 12 2 16 16 H 1.08005 * 119.99636 * 0.02562 * 15 14 12 17 17 C 1.38743 * 119.99862 * 180.02562 * 15 14 12 18 18 N 1.31444 * 120.00408 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99919 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46978 * 90.00022 * 19 17 15 21 21 H 1.48496 * 109.47270 * 210.00499 * 19 17 15 22 22 H 1.48501 * 109.46856 * 330.00077 * 19 17 15 23 23 H 1.08999 * 109.47170 * 300.00436 * 1 2 3 24 24 H 1.09008 * 109.46793 * 60.00145 * 1 2 3 25 25 H 1.08996 * 109.47324 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.01576 * 0.02562 * 6 5 4 27 27 H 1.07996 * 119.97070 * 179.97438 * 7 6 5 28 28 H 1.07994 * 119.94794 * 179.72083 * 8 7 6 29 29 H 1.07999 * 120.03137 * 179.76615 * 11 9 8 30 30 H 0.96997 * 119.99908 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1092 0.0616 -2.3050 6 6 1.6548 1.3725 -2.3288 7 6 1.7596 2.1182 -3.4867 8 6 2.3120 1.5581 -4.6239 9 6 2.7708 0.2529 -4.6018 10 17 3.4703 -0.4452 -6.0290 11 6 2.6679 -0.4973 -3.4447 12 6 2.0322 -0.7103 1.2305 13 8 2.7292 -1.6959 1.1193 14 8 1.7078 -0.2514 2.4503 15 6 2.1906 -0.9333 3.5098 16 1 2.8082 -1.8056 3.3545 17 6 1.8935 -0.5140 4.7985 18 7 1.1413 0.5473 4.9874 19 14 2.5625 -1.4577 6.2654 20 1 3.8820 -0.8982 6.6539 21 1 1.6181 -1.3359 7.4049 22 1 2.7191 -2.8893 5.9032 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.2194 1.8095 -1.4423 27 1 1.4056 3.1384 -3.5054 28 1 2.3889 2.1414 -5.5294 29 1 3.0225 -1.5173 -3.4285 30 1 0.9340 0.8406 5.8884 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843448611.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:03 Heat of formation + Delta-G solvation = -115.834660 kcal Electronic energy + Delta-G solvation = -17724.822668 eV Core-core repulsion = 14511.275761 eV Total energy + Delta-G solvation = -3213.546907 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.049 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.78634 -40.78234 -38.87655 -37.42204 -37.09229 -34.42531 -33.35539 -31.66277 -30.78762 -27.79483 -25.80571 -24.03707 -23.55142 -21.71338 -19.99647 -19.54914 -18.61018 -17.51272 -17.13067 -16.98884 -16.44939 -16.15665 -16.10133 -15.83545 -14.93992 -14.62782 -14.41989 -14.21766 -13.70637 -13.44053 -13.27090 -13.11814 -12.77715 -12.68127 -12.42202 -12.25530 -12.15611 -12.04673 -11.96026 -11.87031 -11.03518 -10.73643 -9.92335 -9.35434 -8.59033 -6.39575 0.05958 0.27467 0.93696 1.21122 1.31537 1.46926 1.54853 1.65015 2.22253 2.57856 2.80233 2.91857 3.58341 3.77888 3.81942 4.01471 4.09844 4.13405 4.37228 4.42050 4.61117 4.70986 4.79549 5.07064 5.11434 5.12286 5.23981 5.31521 5.53523 5.76401 6.21298 6.53931 6.85587 7.62554 8.60664 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.043551 B = 0.003655 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.763550 B = 7658.912890 C = 8060.184505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 H 0.125 0.875 4 O -0.312 6.312 5 C 0.123 3.877 6 C -0.210 4.210 7 C -0.055 4.055 8 C -0.145 4.145 9 C -0.003 4.003 10 Cl -0.061 7.061 11 C -0.163 4.163 12 C 0.394 3.606 13 O -0.573 6.573 14 O -0.225 6.225 15 C -0.427 4.427 16 H 0.080 0.920 17 C 0.004 3.996 18 N -0.894 5.894 19 Si 1.016 2.984 20 H -0.259 1.259 21 H -0.257 1.257 22 H -0.266 1.266 23 H 0.088 0.912 24 H 0.107 0.893 25 H 0.060 0.940 26 H 0.152 0.848 27 H 0.174 0.826 28 H 0.162 0.838 29 H 0.131 0.869 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 5.907 -17.007 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 H 0.143 0.857 4 O -0.226 6.226 5 C 0.077 3.923 6 C -0.228 4.228 7 C -0.073 4.073 8 C -0.164 4.164 9 C -0.029 4.029 10 Cl -0.032 7.032 11 C -0.183 4.183 12 C 0.240 3.760 13 O -0.470 6.470 14 O -0.133 6.133 15 C -0.502 4.502 16 H 0.097 0.903 17 C -0.198 4.198 18 N -0.531 5.531 19 Si 0.835 3.165 20 H -0.184 1.184 21 H -0.180 1.180 22 H -0.191 1.191 23 H 0.106 0.894 24 H 0.125 0.875 25 H 0.079 0.921 26 H 0.170 0.830 27 H 0.191 0.809 28 H 0.179 0.821 29 H 0.149 0.851 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.047 5.521 -16.945 17.853 hybrid contribution 0.482 -0.775 0.691 1.145 sum -0.565 4.746 -16.255 16.943 Atomic orbital electron populations 1.22261 0.89973 1.04090 1.05495 1.21554 0.97117 0.95938 0.79591 0.85743 1.86128 1.81571 1.38477 1.16440 1.19107 0.95984 0.91440 0.85721 1.21751 1.05838 0.93150 1.02068 1.21331 0.94960 1.00917 0.90096 1.21332 1.00999 0.92988 1.01034 1.20657 1.00042 0.94565 0.87673 1.98372 1.82712 1.84685 1.37402 1.20274 1.05315 1.01880 0.90793 1.23785 0.80910 0.84729 0.86535 1.90561 1.39849 1.28865 1.87749 1.83850 1.64281 1.52198 1.13006 1.21435 1.33776 1.12010 0.82974 0.90263 1.26478 0.95817 0.97316 1.00140 1.70041 1.34805 1.23857 1.24356 0.84648 0.78692 0.77893 0.75276 1.18386 1.18042 1.19061 0.89369 0.87454 0.92133 0.83049 0.80863 0.82075 0.85121 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 9.10 71.98 0.66 -4.24 16 2 C 0.12 4.28 2.75 29.85 0.08 4.36 16 3 H 0.13 3.93 6.32 -2.38 -0.02 3.92 16 4 O -0.31 -11.73 9.33 -73.36 -0.68 -12.41 16 5 C 0.12 3.62 6.60 22.50 0.15 3.77 16 6 C -0.21 -4.67 8.24 22.37 0.18 -4.48 16 7 C -0.06 -0.90 10.04 22.25 0.22 -0.68 16 8 C -0.14 -2.50 9.83 22.31 0.22 -2.28 16 9 C 0.00 -0.06 6.32 22.31 0.14 0.08 16 10 Cl -0.06 -1.23 28.95 -2.72 -0.08 -1.31 16 11 C -0.16 -4.50 9.77 22.39 0.22 -4.28 16 12 C 0.39 20.28 7.28 71.23 0.52 20.80 16 13 O -0.57 -33.52 15.74 27.18 0.43 -33.09 16 14 O -0.23 -12.99 9.65 14.83 0.14 -12.85 16 15 C -0.43 -25.73 9.64 67.94 0.66 -25.07 16 16 H 0.08 4.93 6.86 -2.91 -0.02 4.91 16 17 C 0.00 0.22 5.49 84.87 0.47 0.68 16 18 N -0.89 -50.94 13.67 21.62 0.30 -50.64 16 19 Si 1.02 42.67 29.55 68.60 2.03 44.70 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 H 0.09 2.78 8.11 -2.39 -0.02 2.76 16 24 H 0.11 2.39 6.90 -2.38 -0.02 2.37 16 25 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.15 2.96 5.43 -2.91 -0.02 2.94 16 27 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 28 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 29 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 30 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -73.30 287.50 6.82 -66.48 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 1.17 Total: 10.47 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 3.51 Total: -11.35 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.30 Total: -50.64 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -0.11 Total: -58.35 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -73.30 6.82 -66.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843448611.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.352 kcal (2) G-P(sol) polarization free energy of solvation -73.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds