Wall clock time and date at job start Mon Mar 30 2020 01:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00254 * 2 1 4 4 C 1.50700 * 109.47084 * 179.97438 * 3 2 1 5 5 C 1.33858 * 122.44352 * 269.97159 * 4 3 2 6 6 S 1.70620 * 110.95987 * 180.02562 * 5 4 3 7 7 C 1.75827 * 91.56631 * 0.02562 * 6 5 4 8 8 C 1.46390 * 125.46582 * 179.97438 * 7 6 5 9 9 O 1.21634 * 120.00320 * 180.02562 * 8 7 6 10 10 O 1.34902 * 119.99825 * 0.04151 * 8 7 6 11 11 C 1.45199 * 116.99868 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47012 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47384 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99975 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00249 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00028 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00037 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47367 * 89.99930 * 17 15 13 19 19 H 1.48497 * 109.47169 * 210.00103 * 17 15 13 20 20 H 1.48507 * 109.47070 * 330.00096 * 17 15 13 21 21 C 1.36755 * 109.07624 * 0.02562 * 7 6 5 22 22 H 1.09006 * 109.46946 * 60.00126 * 1 2 3 23 23 H 1.09001 * 109.47457 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47483 * 300.00625 * 1 2 3 25 25 H 1.08994 * 109.47340 * 59.99344 * 3 2 1 26 26 H 1.09008 * 109.46851 * 299.99418 * 3 2 1 27 27 H 1.07999 * 124.52105 * 0.02562 * 5 4 3 28 28 H 1.09000 * 109.47411 * 299.99410 * 11 10 8 29 29 H 1.08990 * 109.47506 * 59.99997 * 11 10 8 30 30 H 1.09002 * 109.47029 * 299.99807 * 12 11 10 31 31 H 1.09006 * 109.47391 * 59.99596 * 12 11 10 32 32 H 0.96997 * 120.00031 * 179.97438 * 16 15 13 33 33 H 1.07995 * 123.35949 * 179.73286 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2280 1.1304 1.1306 6 16 5.8950 0.9988 0.7916 7 6 5.5938 1.0226 -0.9405 8 6 6.6193 0.9422 -1.9821 9 8 6.2982 0.9680 -3.1550 10 8 7.9204 0.8391 -1.6411 11 6 8.8823 0.7643 -2.7262 12 6 10.2947 0.6516 -2.1488 13 6 11.2930 0.5734 -3.2749 14 1 10.9540 0.6008 -4.2999 15 6 12.6392 0.4667 -2.9966 16 7 13.5105 0.3989 -3.9794 17 14 13.2256 0.4185 -1.2238 18 1 13.2707 -0.9900 -0.7554 19 1 14.5833 1.0133 -1.1351 20 1 12.2888 1.1938 -0.3713 21 6 4.2480 1.1295 -1.1588 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6886 1.8464 0.8899 26 1 1.6887 1.8463 -0.8901 27 1 3.8063 1.1640 2.1243 28 1 8.6703 -0.1111 -3.3400 29 1 8.8103 1.6633 -3.3382 30 1 10.5071 1.5268 -1.5347 31 1 10.3665 -0.2477 -1.5369 32 1 14.4576 0.3243 -3.7837 33 1 3.8075 1.1686 -2.1440 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850073759.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:50 Heat of formation + Delta-G solvation = -104.158629 kcal Electronic energy + Delta-G solvation = -17292.259430 eV Core-core repulsion = 14217.095635 eV Total energy + Delta-G solvation = -3075.163795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.01711 -38.99356 -37.25765 -36.06370 -33.31989 -31.20542 -30.48343 -28.13611 -26.21008 -25.79419 -24.14810 -21.10127 -20.62469 -19.26119 -18.54710 -17.05296 -16.77121 -16.51559 -16.19757 -16.05691 -15.64945 -15.19981 -14.21112 -13.93370 -13.74823 -13.29262 -13.08008 -12.93237 -12.52202 -12.37247 -12.29011 -11.72511 -11.52910 -11.33373 -11.02518 -10.71551 -10.63924 -10.09186 -10.04452 -9.94792 -9.72870 -9.35643 -9.09423 -8.73684 -8.62512 -6.13035 -4.14359 0.27401 1.30062 1.72407 1.95751 2.96787 3.01484 3.28109 3.35390 3.39658 3.71304 4.38540 4.60465 4.63964 4.86169 4.97625 5.00156 5.04617 5.08056 5.20464 5.28396 5.31344 5.63865 5.92088 5.96075 5.99817 6.06863 6.43417 6.70144 6.76464 7.15584 7.20692 7.61573 8.02731 8.39355 8.88604 9.46321 10.99493 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.042813 B = 0.003347 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.855951 B = 8362.875258 C = 8863.676610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.124 3.876 4 C -0.128 4.128 5 C -0.222 4.222 6 S 0.271 5.729 7 C -0.254 4.254 8 C 0.533 3.467 9 O -0.502 6.502 10 O -0.358 6.358 11 C 0.084 3.916 12 C -0.009 4.009 13 C -0.528 4.528 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.881 3.119 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.263 1.263 21 C -0.037 4.037 22 H 0.042 0.958 23 H 0.087 0.913 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.171 0.829 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.266 0.734 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.213 2.326 13.072 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.045 3.955 4 C -0.141 4.141 5 C -0.360 4.360 6 S 0.541 5.459 7 C -0.372 4.372 8 C 0.376 3.624 9 O -0.393 6.393 10 O -0.275 6.275 11 C 0.012 3.988 12 C -0.047 4.047 13 C -0.565 4.565 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.708 3.292 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.070 4.070 22 H 0.061 0.939 23 H 0.105 0.895 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.189 0.811 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.594 2.047 13.591 26.446 hybrid contribution -1.129 0.258 -0.180 1.172 sum -23.723 2.304 13.411 27.349 Atomic orbital electron populations 1.22764 0.80904 1.02948 1.00004 1.87991 1.19617 1.27458 1.95401 1.20995 0.88284 0.85078 1.01096 1.18322 0.95821 1.08131 0.91837 1.25462 1.00241 1.06900 1.03411 1.83489 1.01232 1.64005 0.97156 1.23704 0.96213 1.19803 0.97498 1.19558 0.82494 0.73534 0.86817 1.90872 1.82793 1.46397 1.19208 1.86570 1.15566 1.82821 1.42522 1.23450 0.86740 1.01960 0.86662 1.19637 0.89043 0.97902 0.98089 1.20829 0.90293 1.52045 0.93372 0.90603 1.24935 0.96496 0.94130 0.97448 1.69893 1.02188 1.49761 1.31615 0.86751 0.78212 0.78893 0.85367 1.20028 1.21165 1.18720 1.20581 0.90498 0.95805 1.00090 0.93899 0.89495 0.94068 0.92233 0.92008 0.81136 0.91453 0.91432 0.95307 0.95729 0.92419 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.84 10.69 -35.23 -0.38 -4.22 16 3 C 0.12 1.04 6.18 36.01 0.22 1.26 16 4 C -0.13 -1.34 5.41 -106.46 -0.58 -1.92 16 5 C -0.22 -2.09 10.67 29.19 0.31 -1.78 16 6 S 0.27 3.08 22.92 -107.50 -2.46 0.62 16 7 C -0.25 -3.69 6.45 -36.84 -0.24 -3.92 16 8 C 0.53 9.73 7.92 34.01 0.27 9.99 16 9 O -0.50 -10.27 16.64 -19.37 -0.32 -10.59 16 10 O -0.36 -7.03 10.08 -41.04 -0.41 -7.44 16 11 C 0.08 1.83 5.42 37.16 0.20 2.03 16 12 C -0.01 -0.23 4.42 -27.89 -0.12 -0.35 16 13 C -0.53 -15.04 9.66 -34.44 -0.33 -15.37 16 14 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 15 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 17 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 21 C -0.04 -0.47 9.80 -40.42 -0.40 -0.86 16 22 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 23 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 26 H 0.06 0.45 8.13 -51.92 -0.42 0.03 16 27 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 28 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 31 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 32 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -32.75 309.05 -6.62 -39.36 By element: Atomic # 1 Polarization: -0.73 SS G_CDS: -4.16 Total: -4.88 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 0.35 Total: -7.61 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -1.11 Total: -22.26 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.46 Total: 0.62 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.75 -6.62 -39.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850073759.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.796 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds