Wall clock time and date at job start Mon Mar 30 2020 01:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00254 * 2 1 4 4 C 1.50700 * 109.47084 * 179.97438 * 3 2 1 5 5 C 1.33858 * 122.44352 * 269.97159 * 4 3 2 6 6 S 1.70620 * 110.95987 * 180.02562 * 5 4 3 7 7 C 1.75827 * 91.56631 * 0.02562 * 6 5 4 8 8 C 1.46390 * 125.46582 * 179.97438 * 7 6 5 9 9 O 1.21634 * 120.00320 * 180.02562 * 8 7 6 10 10 O 1.34902 * 119.99825 * 0.04151 * 8 7 6 11 11 C 1.45199 * 116.99868 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47012 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47384 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99975 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00249 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00028 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00037 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47367 * 89.99930 * 17 15 13 19 19 H 1.48497 * 109.47169 * 210.00103 * 17 15 13 20 20 H 1.48507 * 109.47070 * 330.00096 * 17 15 13 21 21 C 1.36755 * 109.07624 * 0.02562 * 7 6 5 22 22 H 1.09006 * 109.46946 * 60.00126 * 1 2 3 23 23 H 1.09001 * 109.47457 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47483 * 300.00625 * 1 2 3 25 25 H 1.08994 * 109.47340 * 59.99344 * 3 2 1 26 26 H 1.09008 * 109.46851 * 299.99418 * 3 2 1 27 27 H 1.07999 * 124.52105 * 0.02562 * 5 4 3 28 28 H 1.09000 * 109.47411 * 299.99410 * 11 10 8 29 29 H 1.08990 * 109.47506 * 59.99997 * 11 10 8 30 30 H 1.09002 * 109.47029 * 299.99807 * 12 11 10 31 31 H 1.09006 * 109.47391 * 59.99596 * 12 11 10 32 32 H 0.96997 * 120.00031 * 179.97438 * 16 15 13 33 33 H 1.07995 * 123.35949 * 179.73286 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2280 1.1304 1.1306 6 16 5.8950 0.9988 0.7916 7 6 5.5938 1.0226 -0.9405 8 6 6.6193 0.9422 -1.9821 9 8 6.2982 0.9680 -3.1550 10 8 7.9204 0.8391 -1.6411 11 6 8.8823 0.7643 -2.7262 12 6 10.2947 0.6516 -2.1488 13 6 11.2930 0.5734 -3.2749 14 1 10.9540 0.6008 -4.2999 15 6 12.6392 0.4667 -2.9966 16 7 13.5105 0.3989 -3.9794 17 14 13.2256 0.4185 -1.2238 18 1 13.2707 -0.9900 -0.7554 19 1 14.5833 1.0133 -1.1351 20 1 12.2888 1.1938 -0.3713 21 6 4.2480 1.1295 -1.1588 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.6886 1.8464 0.8899 26 1 1.6887 1.8463 -0.8901 27 1 3.8063 1.1640 2.1243 28 1 8.6703 -0.1111 -3.3400 29 1 8.8103 1.6633 -3.3382 30 1 10.5071 1.5268 -1.5347 31 1 10.3665 -0.2477 -1.5369 32 1 14.4576 0.3243 -3.7837 33 1 3.8075 1.1686 -2.1440 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850073759.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:49 Heat of formation + Delta-G solvation = -125.103327 kcal Electronic energy + Delta-G solvation = -17293.167660 eV Core-core repulsion = 14217.095635 eV Total energy + Delta-G solvation = -3076.072026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.45199 -39.82759 -38.12392 -37.50379 -35.41223 -32.93613 -31.73791 -28.78871 -27.61230 -26.68873 -25.52016 -22.73012 -22.14145 -20.20511 -19.77523 -18.96590 -17.80337 -17.65913 -17.40742 -17.30080 -16.37869 -16.29926 -16.02013 -15.33914 -15.06069 -14.63324 -14.20910 -14.03366 -13.99971 -13.33680 -13.22133 -13.07223 -12.96308 -12.52712 -12.48972 -12.26665 -11.90155 -11.81510 -11.70313 -11.55401 -11.49477 -10.81803 -10.61976 -10.04722 -9.59902 -8.34845 -6.43440 -0.71754 0.37706 0.84781 1.00300 1.38524 1.40158 1.52698 1.55722 1.74382 2.34439 2.99878 3.12389 3.64078 3.91732 3.99131 4.13339 4.15228 4.19502 4.41788 4.49077 4.56880 4.59446 4.61773 4.69485 4.91255 4.98152 5.13363 5.22878 5.26242 5.40073 5.49839 6.14629 6.23504 6.53903 6.62465 7.21537 8.81225 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.042813 B = 0.003347 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.855951 B = 8362.875258 C = 8863.676610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.123 3.877 4 C -0.143 4.143 5 C -0.191 4.191 6 S 0.290 5.710 7 C -0.301 4.301 8 C 0.532 3.468 9 O -0.537 6.537 10 O -0.357 6.357 11 C 0.095 3.905 12 C -0.002 4.002 13 C -0.543 4.543 14 H 0.035 0.965 15 C 0.012 3.988 16 N -0.944 5.944 17 Si 0.954 3.046 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.243 1.243 21 C -0.024 4.024 22 H 0.050 0.950 23 H 0.091 0.909 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.209 0.791 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.271 0.729 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.962 2.612 16.652 30.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.045 3.955 4 C -0.155 4.155 5 C -0.329 4.329 6 S 0.560 5.440 7 C -0.419 4.419 8 C 0.378 3.622 9 O -0.429 6.429 10 O -0.274 6.274 11 C 0.021 3.979 12 C -0.040 4.040 13 C -0.581 4.581 14 H 0.053 0.947 15 C -0.186 4.186 16 N -0.583 5.583 17 Si 0.776 3.224 18 H -0.188 1.188 19 H -0.205 1.205 20 H -0.166 1.166 21 C -0.059 4.059 22 H 0.068 0.932 23 H 0.110 0.890 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.226 0.774 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -24.374 2.336 17.179 29.911 hybrid contribution -0.738 0.171 -1.313 1.516 sum -25.113 2.507 15.866 29.811 Atomic orbital electron populations 1.22933 0.79232 1.03732 1.01191 1.87935 1.21533 1.28393 1.95672 1.21105 0.86646 0.84923 1.02825 1.18519 0.97221 1.08584 0.91167 1.25921 0.98985 1.03243 1.04778 1.83392 1.02657 1.63597 0.94339 1.23513 0.95730 1.24096 0.98574 1.20149 0.82214 0.72306 0.87506 1.90843 1.82947 1.48289 1.20865 1.86539 1.16266 1.83300 1.41259 1.23036 0.86585 1.01319 0.86926 1.19469 0.89226 0.98587 0.96687 1.21090 0.91825 1.52187 0.93012 0.94668 1.25963 0.96465 0.93382 1.02831 1.70040 1.02818 1.50974 1.34500 0.85599 0.78037 0.79759 0.78966 1.18755 1.20540 1.16574 1.20792 0.90043 0.93956 1.01078 0.93184 0.89039 0.92376 0.89583 0.91262 0.77437 0.92273 0.92145 0.94409 0.94614 0.92012 0.83059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -7.23 10.69 -148.98 -1.59 -8.83 16 3 C 0.12 1.69 6.18 71.24 0.44 2.13 16 4 C -0.14 -2.61 5.41 -21.05 -0.11 -2.72 16 5 C -0.19 -2.88 10.67 66.82 0.71 -2.16 16 6 S 0.29 5.91 22.92 -56.49 -1.29 4.61 16 7 C -0.30 -8.56 6.45 24.05 0.16 -8.41 16 8 C 0.53 19.74 7.92 69.94 0.55 20.29 16 9 O -0.54 -22.77 16.64 19.40 0.32 -22.45 16 10 O -0.36 -14.05 10.08 -58.16 -0.59 -14.63 16 11 C 0.09 4.20 5.42 71.98 0.39 4.59 16 12 C 0.00 -0.11 4.42 29.85 0.13 0.02 16 13 C -0.54 -31.78 9.66 25.60 0.25 -31.53 16 14 H 0.03 2.27 7.99 -2.91 -0.02 2.24 16 15 C 0.01 0.68 5.47 84.66 0.46 1.14 16 16 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 17 Si 0.95 43.46 27.47 68.60 1.88 45.34 16 18 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.24 -10.19 6.54 99.48 0.65 -9.53 16 21 C -0.02 -0.59 9.80 21.73 0.21 -0.38 16 22 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 23 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 25 H 0.09 0.72 8.12 -2.39 -0.02 0.70 16 26 H 0.07 0.83 8.13 -2.38 -0.02 0.81 16 27 H 0.21 1.58 8.06 -2.91 -0.02 1.55 16 28 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.04 1.76 7.20 -2.39 -0.02 1.74 16 31 H 0.04 1.65 7.57 -2.38 -0.02 1.63 16 32 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 33 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -72.58 309.05 4.53 -68.05 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: 1.05 Total: 2.12 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 4.44 Total: -15.53 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.30 Total: -58.69 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -1.86 Total: -45.91 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.34 kcal Atomic # 16 Polarization: 5.91 SS G_CDS: -1.29 Total: 4.61 kcal Total: -72.58 4.53 -68.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850073759.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.053 kcal (2) G-P(sol) polarization free energy of solvation -72.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds