Wall clock time and date at job start Mon Mar 30 2020 01:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76199 * 102.99950 * 2 1 4 4 C 1.35104 * 125.51672 * 179.97438 * 3 2 1 5 5 C 1.47099 * 105.88041 * 179.97438 * 4 3 2 6 6 C 1.47233 * 127.15692 * 179.97438 * 5 4 3 7 7 O 1.21532 * 119.99821 * 180.02562 * 6 5 4 8 8 O 1.34773 * 120.00087 * 0.03190 * 6 5 4 9 9 C 1.45199 * 117.00331 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47379 * 180.02562 * 9 8 6 11 11 C 1.50708 * 109.47222 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99352 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00405 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99444 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00309 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47001 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47242 * 120.00378 * 15 13 11 18 18 H 1.48502 * 109.47305 * 240.00484 * 15 13 11 19 19 C 1.36414 * 105.68319 * 0.02562 * 5 4 3 20 20 C 1.50700 * 125.72093 * 179.97438 * 19 5 4 21 21 O 1.33914 * 108.55606 * 359.97438 * 19 5 4 22 22 H 1.08997 * 109.47312 * 60.00030 * 1 2 3 23 23 H 1.08992 * 109.47333 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47055 * 300.00193 * 1 2 3 25 25 H 1.08003 * 127.05925 * 359.74458 * 4 3 2 26 26 H 1.09007 * 109.46695 * 300.00168 * 9 8 6 27 27 H 1.09000 * 109.46978 * 59.99687 * 9 8 6 28 28 H 1.08993 * 109.47126 * 299.99678 * 10 9 8 29 29 H 1.09000 * 109.47395 * 59.99852 * 10 9 8 30 30 H 0.97005 * 119.99199 * 179.97438 * 14 13 11 31 31 H 1.08994 * 109.47339 * 179.97438 * 20 19 5 32 32 H 1.08998 * 109.47091 * 300.00323 * 20 19 5 33 33 H 1.09006 * 109.47183 * 59.99415 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4584 2.2342 0.0005 5 6 3.2884 3.6954 -0.0004 6 6 4.3512 4.7143 0.0003 7 8 4.0614 5.8946 -0.0001 8 8 5.6454 4.3382 0.0012 9 6 6.6395 5.3965 0.0012 10 6 8.0400 4.7807 0.0016 11 6 9.0718 5.8792 0.0010 12 1 8.7597 6.9130 0.0008 13 6 10.4141 5.5642 0.0018 14 7 10.7941 4.3051 0.0025 15 14 11.6929 6.9258 0.0017 16 1 11.0113 8.2451 0.0014 17 1 12.5416 6.8078 1.2147 18 1 12.5426 6.8068 -1.2104 19 6 1.9412 3.9098 -0.0007 20 6 1.2647 5.2565 -0.0010 21 8 1.3208 2.7231 -0.0007 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.3897 1.6873 0.0048 26 1 6.5141 6.0127 -0.8892 27 1 6.5132 6.0136 0.8908 28 1 8.1656 4.1643 0.8917 29 1 8.1660 4.1639 -0.8882 30 1 11.7385 4.0836 0.0027 31 1 0.1834 5.1198 -0.0017 32 1 1.5606 5.8119 0.8889 33 1 1.5610 5.8118 -0.8910 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850231125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:06 Heat of formation + Delta-G solvation = -84.520296 kcal Electronic energy + Delta-G solvation = -17594.773595 eV Core-core repulsion = 14520.461382 eV Total energy + Delta-G solvation = -3074.312213 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.69198 -39.61314 -36.07832 -33.41591 -33.18617 -32.08424 -30.24806 -29.40741 -27.38579 -25.24659 -23.59651 -21.74018 -20.77056 -19.99153 -18.47960 -16.99789 -16.75998 -16.11701 -15.70404 -15.67743 -15.51651 -14.54399 -14.36243 -14.01688 -13.66209 -13.34481 -13.33236 -13.03316 -12.81357 -12.63028 -12.35454 -11.91366 -11.23223 -11.08436 -11.01646 -10.75368 -10.68279 -10.29095 -10.27333 -9.66570 -9.62672 -9.48176 -9.26932 -8.43011 -7.62364 -6.08864 -4.13080 0.89224 1.11231 1.55825 1.73832 2.96220 3.26398 3.28732 3.30190 3.36664 3.42268 4.40597 4.53875 4.67516 4.68560 4.87093 4.99978 5.15008 5.27492 5.27782 5.35751 5.50308 5.62680 5.87216 6.08725 6.11769 6.13989 6.64243 6.66777 6.97400 7.58157 7.64800 7.88588 8.20658 8.28554 8.92698 9.51216 11.02730 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030962 B = 0.003427 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.108799 B = 8169.601975 C = 9042.660793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.018 6.018 3 C -0.045 4.045 4 C -0.121 4.121 5 C -0.209 4.209 6 C 0.533 3.467 7 O -0.518 6.518 8 O -0.348 6.348 9 C 0.076 3.924 10 C 0.024 3.976 11 C -0.525 4.525 12 H 0.060 0.940 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.084 3.916 20 C -0.073 4.073 21 O -0.171 6.171 22 H 0.087 0.913 23 H 0.111 0.889 24 H 0.087 0.913 25 H 0.171 0.829 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.263 0.737 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.503 -7.019 -0.003 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.219 5.781 3 C -0.203 4.203 4 C -0.149 4.149 5 C -0.213 4.213 6 C 0.378 3.622 7 O -0.409 6.409 8 O -0.264 6.264 9 C 0.004 3.996 10 C -0.013 4.013 11 C -0.563 4.563 12 H 0.078 0.922 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.028 3.972 20 C -0.130 4.130 21 O -0.069 6.069 22 H 0.106 0.894 23 H 0.130 0.870 24 H 0.106 0.894 25 H 0.189 0.811 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.055 -7.849 -0.002 23.410 hybrid contribution 0.203 1.752 0.001 1.764 sum -21.852 -6.097 -0.002 22.686 Atomic orbital electron populations 1.23620 0.94710 1.07257 1.06553 1.85885 1.06296 0.92211 1.93724 1.23969 0.90463 0.92326 1.13563 1.22745 0.97060 0.91723 1.03357 1.20306 0.91734 0.92932 1.16309 1.19824 0.82981 0.86427 0.72929 1.90798 1.84271 1.18672 1.47203 1.86603 1.14779 1.42386 1.82614 1.23675 0.87068 0.87862 1.01009 1.19179 0.86066 0.97136 0.98938 1.21016 0.90626 0.92670 1.52027 0.92189 1.24989 0.98608 0.95709 0.94904 1.69994 1.16219 1.16714 1.49880 0.86416 0.81247 0.81959 0.77687 1.19593 1.20841 1.20837 1.22840 0.90347 0.86394 0.97580 1.20532 0.99901 0.86918 1.05621 1.83909 1.36737 1.13373 1.72883 0.89365 0.87026 0.89369 0.81149 0.92216 0.92212 0.95304 0.95302 0.92775 0.90447 0.88254 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.45 101.05 1.06 0.11 16 2 S -0.02 -0.17 22.74 -107.50 -2.44 -2.62 16 3 C -0.05 -0.58 7.32 29.62 0.22 -0.36 16 4 C -0.12 -1.77 11.01 -37.10 -0.41 -2.18 16 5 C -0.21 -3.33 6.31 -103.31 -0.65 -3.98 16 6 C 0.53 10.12 7.95 34.39 0.27 10.39 16 7 O -0.52 -10.29 15.43 -19.29 -0.30 -10.59 16 8 O -0.35 -7.37 10.13 -40.69 -0.41 -7.79 16 9 C 0.08 1.74 5.41 37.16 0.20 1.94 16 10 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 11 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 15 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.08 1.11 7.37 -34.97 -0.26 0.86 16 20 C -0.07 -0.74 9.13 36.01 0.33 -0.41 16 21 O -0.17 -2.13 10.19 6.71 0.07 -2.06 16 22 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 25 H 0.17 2.38 8.06 -52.48 -0.42 1.96 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 33 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 LS Contribution 312.90 15.07 4.72 4.72 Total: -1.00 -31.92 312.90 -6.64 -38.57 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -4.18 Total: -4.15 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 0.20 Total: -6.75 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.64 Total: -20.44 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.44 Total: -2.62 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.92 -6.64 -38.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850231125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.955 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds