Wall clock time and date at job start Mon Mar 30 2020 01:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76199 * 102.99950 * 2 1 4 4 C 1.35104 * 125.51672 * 179.97438 * 3 2 1 5 5 C 1.47099 * 105.88041 * 179.97438 * 4 3 2 6 6 C 1.47233 * 127.15692 * 179.97438 * 5 4 3 7 7 O 1.21532 * 119.99821 * 180.02562 * 6 5 4 8 8 O 1.34773 * 120.00087 * 0.03190 * 6 5 4 9 9 C 1.45199 * 117.00331 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47379 * 180.02562 * 9 8 6 11 11 C 1.50708 * 109.47222 * 179.97438 * 10 9 8 12 12 H 1.07998 * 119.99352 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00405 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99444 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00309 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47001 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47242 * 120.00378 * 15 13 11 18 18 H 1.48502 * 109.47305 * 240.00484 * 15 13 11 19 19 C 1.36414 * 105.68319 * 0.02562 * 5 4 3 20 20 C 1.50700 * 125.72093 * 179.97438 * 19 5 4 21 21 O 1.33914 * 108.55606 * 359.97438 * 19 5 4 22 22 H 1.08997 * 109.47312 * 60.00030 * 1 2 3 23 23 H 1.08992 * 109.47333 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47055 * 300.00193 * 1 2 3 25 25 H 1.08003 * 127.05925 * 359.74458 * 4 3 2 26 26 H 1.09007 * 109.46695 * 300.00168 * 9 8 6 27 27 H 1.09000 * 109.46978 * 59.99687 * 9 8 6 28 28 H 1.08993 * 109.47126 * 299.99678 * 10 9 8 29 29 H 1.09000 * 109.47395 * 59.99852 * 10 9 8 30 30 H 0.97005 * 119.99199 * 179.97438 * 14 13 11 31 31 H 1.08994 * 109.47339 * 179.97438 * 20 19 5 32 32 H 1.08998 * 109.47091 * 300.00323 * 20 19 5 33 33 H 1.09006 * 109.47183 * 59.99415 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.4584 2.2342 0.0005 5 6 3.2884 3.6954 -0.0004 6 6 4.3512 4.7143 0.0003 7 8 4.0614 5.8946 -0.0001 8 8 5.6454 4.3382 0.0012 9 6 6.6395 5.3965 0.0012 10 6 8.0400 4.7807 0.0016 11 6 9.0718 5.8792 0.0010 12 1 8.7597 6.9130 0.0008 13 6 10.4141 5.5642 0.0018 14 7 10.7941 4.3051 0.0025 15 14 11.6929 6.9258 0.0017 16 1 11.0113 8.2451 0.0014 17 1 12.5416 6.8078 1.2147 18 1 12.5426 6.8068 -1.2104 19 6 1.9412 3.9098 -0.0007 20 6 1.2647 5.2565 -0.0010 21 8 1.3208 2.7231 -0.0007 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.3897 1.6873 0.0048 26 1 6.5141 6.0127 -0.8892 27 1 6.5132 6.0136 0.8908 28 1 8.1656 4.1643 0.8917 29 1 8.1660 4.1639 -0.8882 30 1 11.7385 4.0836 0.0027 31 1 0.1834 5.1198 -0.0017 32 1 1.5606 5.8119 0.8889 33 1 1.5610 5.8118 -0.8910 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850231125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:06 Heat of formation + Delta-G solvation = -102.616452 kcal Electronic energy + Delta-G solvation = -17595.558303 eV Core-core repulsion = 14520.461382 eV Total energy + Delta-G solvation = -3075.096922 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.75327 -41.19408 -37.72510 -35.46194 -34.39976 -33.06866 -32.29743 -29.90744 -28.49461 -27.11066 -25.03985 -23.17643 -22.51052 -21.16589 -19.73304 -18.70993 -17.97523 -17.90242 -17.27724 -16.91648 -16.64533 -16.42567 -15.29330 -15.06979 -14.53781 -14.51649 -14.48347 -14.30653 -14.15370 -13.94726 -13.54115 -13.16940 -13.04905 -12.80009 -12.62746 -12.56553 -11.93189 -11.77584 -11.58200 -11.50831 -11.38743 -11.32297 -10.63250 -10.56445 -8.47751 -8.27561 -6.41112 -0.05338 -0.00107 0.59900 0.88803 1.40769 1.42073 1.54793 1.64479 1.87387 2.18003 2.40436 3.06859 3.54637 3.63665 3.76912 4.21037 4.21211 4.23699 4.27331 4.29556 4.44236 4.55931 4.57788 4.67802 4.84246 4.97075 5.06744 5.21914 5.44407 5.47644 5.60461 5.72362 6.05036 6.65871 6.73199 7.28781 8.85510 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030962 B = 0.003427 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.108799 B = 8169.601975 C = 9042.660793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.025 6.025 3 C -0.036 4.036 4 C -0.150 4.150 5 C -0.246 4.246 6 C 0.532 3.468 7 O -0.530 6.530 8 O -0.361 6.361 9 C 0.092 3.908 10 C 0.030 3.970 11 C -0.549 4.549 12 H 0.067 0.933 13 C 0.005 3.995 14 N -0.928 5.928 15 Si 0.976 3.024 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.275 1.275 19 C 0.106 3.894 20 C -0.074 4.074 21 O -0.160 6.160 22 H 0.094 0.906 23 H 0.138 0.862 24 H 0.094 0.906 25 H 0.165 0.835 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.005 0.995 29 H 0.005 0.995 30 H 0.268 0.732 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.315 -6.593 -0.004 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.212 5.788 3 C -0.194 4.194 4 C -0.178 4.178 5 C -0.250 4.250 6 C 0.380 3.620 7 O -0.423 6.423 8 O -0.277 6.277 9 C 0.019 3.981 10 C -0.007 4.007 11 C -0.587 4.587 12 H 0.085 0.915 13 C -0.194 4.194 14 N -0.567 5.567 15 Si 0.800 3.200 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.200 1.200 19 C 0.049 3.951 20 C -0.130 4.130 21 O -0.058 6.058 22 H 0.113 0.887 23 H 0.157 0.843 24 H 0.113 0.887 25 H 0.183 0.817 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.898 -7.431 -0.003 25.026 hybrid contribution 0.609 1.485 0.001 1.605 sum -23.289 -5.946 -0.002 24.036 Atomic orbital electron populations 1.23794 0.91208 1.09202 1.07209 1.86019 1.10091 0.89533 1.93175 1.24352 0.89924 0.93675 1.11413 1.22747 0.97965 0.91446 1.05598 1.20235 0.92038 0.92949 1.19734 1.20252 0.82429 0.87130 0.72232 1.90771 1.84147 1.19288 1.48072 1.86584 1.15928 1.41882 1.83339 1.23227 0.85886 0.87721 1.01282 1.18989 0.88572 0.96503 0.96609 1.21396 0.91555 0.93268 1.52438 0.91497 1.26002 1.00987 0.98407 0.94040 1.70119 1.17081 1.19044 1.50429 0.85234 0.78043 0.78745 0.78015 1.18486 1.20043 1.20032 1.23347 0.89513 0.87588 0.94642 1.20714 1.01932 0.84877 1.05505 1.83955 1.36319 1.13153 1.72353 0.88688 0.84348 0.88692 0.81729 0.91852 0.91844 0.97642 0.97643 0.92327 0.86879 0.88221 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.45 113.37 1.18 -0.17 16 2 S -0.02 -0.45 22.74 -56.49 -1.28 -1.73 16 3 C -0.04 -0.88 7.32 67.10 0.49 -0.39 16 4 C -0.15 -4.45 11.01 23.87 0.26 -4.19 16 5 C -0.25 -7.89 6.31 -19.01 -0.12 -8.01 16 6 C 0.53 20.65 7.95 70.19 0.56 21.21 16 7 O -0.53 -21.19 15.43 19.73 0.30 -20.88 16 8 O -0.36 -15.90 10.13 -56.84 -0.58 -16.47 16 9 C 0.09 4.31 5.41 71.98 0.39 4.70 16 10 C 0.03 1.69 5.35 29.85 0.16 1.85 16 11 C -0.55 -31.68 9.11 25.60 0.23 -31.45 16 12 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 13 C 0.00 0.26 5.46 84.65 0.46 0.72 16 14 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 15 Si 0.98 44.11 29.54 68.60 2.03 46.14 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 C 0.11 2.66 7.37 25.26 0.19 2.84 16 20 C -0.07 -1.33 9.13 71.24 0.65 -0.68 16 21 O -0.16 -3.69 10.19 1.11 0.01 -3.68 16 22 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.14 0.59 8.14 -2.39 -0.02 0.58 16 24 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.17 4.92 8.06 -2.91 -0.02 4.89 16 26 H 0.06 2.90 8.14 -2.38 -0.02 2.88 16 27 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 31 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 1.85 8.08 -2.39 -0.02 1.83 16 33 H 0.10 1.85 8.08 -2.38 -0.02 1.83 16 Total: -1.00 -69.59 312.90 6.34 -63.25 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 1.11 Total: 3.08 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 4.46 Total: -13.57 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.14 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.26 Total: -41.03 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -1.28 Total: -1.73 kcal Total: -69.59 6.34 -63.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850231125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.364 kcal (2) G-P(sol) polarization free energy of solvation -69.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds