Wall clock time and date at job start Mon Mar 30 2020 01:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76204 * 103.00077 * 2 1 4 4 C 1.35104 * 125.51802 * 179.97438 * 3 2 1 5 5 C 1.47095 * 105.87569 * 179.73687 * 4 3 2 6 6 C 1.47228 * 127.15423 * 180.02562 * 5 4 3 7 7 O 1.21544 * 120.00280 * 179.97438 * 6 5 4 8 8 O 1.34778 * 120.00127 * 359.97438 * 6 5 4 9 9 C 1.45200 * 116.99969 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47595 * 29.99607 * 9 8 6 11 11 C 1.53011 * 109.46879 * 269.99662 * 9 8 6 12 12 C 1.50703 * 109.47365 * 149.99821 * 9 8 6 13 13 H 1.07996 * 119.99566 * 359.97438 * 12 9 8 14 14 C 1.37873 * 119.99870 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00662 * 359.97438 * 14 12 9 16 16 Si 1.86806 * 119.99796 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.47031 * 59.99627 * 16 14 12 18 18 H 1.48501 * 109.47034 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46933 * 299.99710 * 16 14 12 20 20 C 1.36412 * 105.68784 * 359.97438 * 5 4 3 21 21 C 1.50706 * 125.72145 * 180.02562 * 20 5 4 22 22 O 1.33922 * 108.55551 * 0.02562 * 20 5 4 23 23 H 1.08995 * 109.47607 * 299.99858 * 1 2 3 24 24 H 1.09000 * 109.47306 * 60.00603 * 1 2 3 25 25 H 1.09008 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.07998 * 127.05970 * 359.71661 * 4 3 2 27 27 H 1.08989 * 109.46845 * 59.99942 * 11 9 8 28 28 H 1.09001 * 109.46961 * 180.02562 * 11 9 8 29 29 H 1.08998 * 109.47120 * 299.99801 * 11 9 8 30 30 H 0.97001 * 120.00608 * 180.02562 * 15 14 12 31 31 H 1.08994 * 109.47228 * 90.00620 * 21 20 5 32 32 H 1.09002 * 109.47031 * 210.00454 * 21 20 5 33 33 H 1.08999 * 109.47221 * 330.00135 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.4584 2.2343 0.0005 5 6 3.2883 3.6953 -0.0062 6 6 4.3510 4.7143 -0.0088 7 8 4.0612 5.8947 -0.0150 8 8 5.6452 4.3382 -0.0044 9 6 6.6392 5.3966 -0.0068 10 1 6.2382 6.2730 0.5023 11 6 6.9916 5.7621 -1.4502 12 6 7.8785 4.9236 0.7084 13 1 7.9152 3.9273 1.1236 14 6 8.9654 5.7627 0.8327 15 7 8.9210 6.9757 0.3267 16 14 10.5018 5.1760 1.7186 17 1 11.0478 3.9820 1.0247 18 1 11.5188 6.2582 1.7151 19 1 10.1604 4.8214 3.1196 20 6 1.9411 3.9098 -0.0107 21 6 1.2646 5.2565 -0.0188 22 8 1.3206 2.7230 -0.0067 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 4.3897 1.6874 0.0052 27 1 6.0953 6.1042 -1.9674 28 1 7.7381 6.5563 -1.4520 29 1 7.3927 4.8858 -1.9593 30 1 9.6858 7.5660 0.4138 31 1 1.1040 5.5762 -1.0484 32 1 0.3049 5.1840 0.4930 33 1 1.8954 5.9831 0.4932 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850842625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:08 Heat of formation + Delta-G solvation = -78.805327 kcal Electronic energy + Delta-G solvation = -18150.802088 eV Core-core repulsion = 15076.737694 eV Total energy + Delta-G solvation = -3074.064394 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.49889 -39.19937 -35.71720 -33.30799 -32.95959 -31.87813 -29.57231 -29.32075 -27.11008 -25.30040 -23.87024 -21.82921 -20.50941 -19.59770 -18.19736 -16.58915 -16.49584 -16.47095 -15.59194 -15.16215 -14.76892 -14.55811 -14.15541 -13.92169 -13.51826 -13.14475 -13.00633 -12.84624 -12.66462 -12.21976 -11.87084 -11.62722 -11.21979 -11.03942 -10.99532 -10.82793 -10.36776 -10.26058 -10.10991 -9.73907 -9.52779 -9.31307 -8.89142 -8.46807 -7.49851 -6.16361 -4.23113 1.01075 1.33711 1.66585 1.94528 3.19200 3.28575 3.31709 3.34672 3.63173 3.73720 4.36060 4.71668 4.76586 4.78021 5.09108 5.16779 5.27189 5.33255 5.38304 5.49419 5.73431 5.96163 6.09263 6.29567 6.65770 6.83796 6.92490 6.94377 7.17887 7.61128 7.74428 7.94277 8.15827 8.64929 8.90398 9.42152 10.91138 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.004337 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.523528 B = 6453.864883 C = 7223.803579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.023 6.023 3 C -0.049 4.049 4 C -0.120 4.120 5 C -0.202 4.202 6 C 0.529 3.471 7 O -0.521 6.521 8 O -0.346 6.346 9 C 0.216 3.784 10 H 0.048 0.952 11 C -0.155 4.155 12 C -0.521 4.521 13 H 0.069 0.931 14 C 0.063 3.937 15 N -0.890 5.890 16 Si 0.912 3.088 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.078 3.922 21 C -0.081 4.081 22 O -0.173 6.173 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.110 0.890 26 H 0.169 0.831 27 H 0.016 0.984 28 H 0.100 0.900 29 H 0.037 0.963 30 H 0.267 0.733 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.611 -10.475 -1.279 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 S 0.214 5.786 3 C -0.207 4.207 4 C -0.147 4.147 5 C -0.206 4.206 6 C 0.374 3.626 7 O -0.413 6.413 8 O -0.262 6.262 9 C 0.164 3.836 10 H 0.066 0.934 11 C -0.213 4.213 12 C -0.559 4.559 13 H 0.087 0.913 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.739 3.261 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.200 1.200 20 C 0.022 3.978 21 C -0.137 4.137 22 O -0.072 6.072 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.129 0.871 26 H 0.187 0.813 27 H 0.035 0.965 28 H 0.118 0.882 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.189 -11.014 -1.302 19.624 hybrid contribution 0.221 0.869 0.373 0.971 sum -15.968 -10.145 -0.929 18.941 Atomic orbital electron populations 1.23602 0.94783 1.07116 1.06536 1.85779 1.06246 0.92654 1.93930 1.23889 0.90520 0.92200 1.14054 1.22733 0.96865 0.91944 1.03207 1.20474 0.91999 0.92995 1.15156 1.19778 0.83609 0.86207 0.73010 1.90749 1.84180 1.18772 1.47611 1.86573 1.14243 1.43821 1.81587 1.20671 0.83334 0.84860 0.94781 0.93437 1.22167 1.00387 1.02173 0.96529 1.20992 0.97409 1.01234 1.36259 0.91320 1.24874 0.98773 0.94678 0.95584 1.69885 1.31401 1.06807 1.44687 0.86326 0.81422 0.78301 0.80044 1.19915 1.21037 1.19968 1.22842 0.90458 0.86225 0.98235 1.20652 1.00913 0.87586 1.04535 1.83882 1.36750 1.13436 1.73107 0.89401 0.89418 0.87140 0.81348 0.96481 0.88187 0.94413 0.92350 0.89185 0.90472 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.45 101.05 1.06 -0.03 16 2 S -0.02 -0.24 22.74 -107.50 -2.44 -2.69 16 3 C -0.05 -0.69 7.32 29.62 0.22 -0.48 16 4 C -0.12 -1.97 11.01 -37.11 -0.41 -2.38 16 5 C -0.20 -3.72 6.31 -103.31 -0.65 -4.37 16 6 C 0.53 11.84 7.93 34.38 0.27 12.11 16 7 O -0.52 -12.29 14.09 -19.30 -0.27 -12.56 16 8 O -0.35 -8.65 9.78 -40.70 -0.40 -9.05 16 9 C 0.22 5.93 2.57 -27.88 -0.07 5.85 16 10 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 11 C -0.15 -4.01 9.33 37.16 0.35 -3.66 16 12 C -0.52 -14.87 8.90 -34.44 -0.31 -15.18 16 13 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 14 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 15 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 16 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 C 0.08 1.20 7.37 -34.96 -0.26 0.94 16 21 C -0.08 -0.99 9.88 36.01 0.36 -0.63 16 22 O -0.17 -2.46 10.19 6.70 0.07 -2.39 16 23 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.11 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.17 2.63 8.06 -52.49 -0.42 2.21 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 1.60 6.47 -51.93 -0.34 1.26 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -31.27 306.20 -6.32 -37.59 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -3.95 Total: -0.77 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 0.46 Total: -6.17 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.63 Total: -24.84 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.60 Total: -24.00 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.44 Total: -2.69 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.27 -6.32 -37.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.217 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds