Wall clock time and date at job start Mon Mar 30 2020 01:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76204 * 103.00077 * 2 1 4 4 C 1.35104 * 125.51802 * 179.97438 * 3 2 1 5 5 C 1.47095 * 105.87569 * 179.73687 * 4 3 2 6 6 C 1.47228 * 127.15423 * 180.02562 * 5 4 3 7 7 O 1.21544 * 120.00280 * 179.97438 * 6 5 4 8 8 O 1.34778 * 120.00127 * 359.97438 * 6 5 4 9 9 C 1.45200 * 116.99969 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47595 * 29.99607 * 9 8 6 11 11 C 1.53011 * 109.46879 * 269.99662 * 9 8 6 12 12 C 1.50703 * 109.47365 * 149.99821 * 9 8 6 13 13 H 1.07996 * 119.99566 * 359.97438 * 12 9 8 14 14 C 1.37873 * 119.99870 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00662 * 359.97438 * 14 12 9 16 16 Si 1.86806 * 119.99796 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.47031 * 59.99627 * 16 14 12 18 18 H 1.48501 * 109.47034 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46933 * 299.99710 * 16 14 12 20 20 C 1.36412 * 105.68784 * 359.97438 * 5 4 3 21 21 C 1.50706 * 125.72145 * 180.02562 * 20 5 4 22 22 O 1.33922 * 108.55551 * 0.02562 * 20 5 4 23 23 H 1.08995 * 109.47607 * 299.99858 * 1 2 3 24 24 H 1.09000 * 109.47306 * 60.00603 * 1 2 3 25 25 H 1.09008 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.07998 * 127.05970 * 359.71661 * 4 3 2 27 27 H 1.08989 * 109.46845 * 59.99942 * 11 9 8 28 28 H 1.09001 * 109.46961 * 180.02562 * 11 9 8 29 29 H 1.08998 * 109.47120 * 299.99801 * 11 9 8 30 30 H 0.97001 * 120.00608 * 180.02562 * 15 14 12 31 31 H 1.08994 * 109.47228 * 90.00620 * 21 20 5 32 32 H 1.09002 * 109.47031 * 210.00454 * 21 20 5 33 33 H 1.08999 * 109.47221 * 330.00135 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.4584 2.2343 0.0005 5 6 3.2883 3.6953 -0.0062 6 6 4.3510 4.7143 -0.0088 7 8 4.0612 5.8947 -0.0150 8 8 5.6452 4.3382 -0.0044 9 6 6.6392 5.3966 -0.0068 10 1 6.2382 6.2730 0.5023 11 6 6.9916 5.7621 -1.4502 12 6 7.8785 4.9236 0.7084 13 1 7.9152 3.9273 1.1236 14 6 8.9654 5.7627 0.8327 15 7 8.9210 6.9757 0.3267 16 14 10.5018 5.1760 1.7186 17 1 11.0478 3.9820 1.0247 18 1 11.5188 6.2582 1.7151 19 1 10.1604 4.8214 3.1196 20 6 1.9411 3.9098 -0.0107 21 6 1.2646 5.2565 -0.0188 22 8 1.3206 2.7230 -0.0067 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 4.3897 1.6874 0.0052 27 1 6.0953 6.1042 -1.9674 28 1 7.7381 6.5563 -1.4520 29 1 7.3927 4.8858 -1.9593 30 1 9.6858 7.5660 0.4138 31 1 1.1040 5.5762 -1.0484 32 1 0.3049 5.1840 0.4930 33 1 1.8954 5.9831 0.4932 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850842625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:07 Heat of formation + Delta-G solvation = -96.666559 kcal Electronic energy + Delta-G solvation = -18151.576609 eV Core-core repulsion = 15076.737694 eV Total energy + Delta-G solvation = -3074.838915 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.71755 -41.04384 -37.62869 -35.35418 -34.32329 -33.02758 -31.67159 -29.89463 -28.32561 -27.46728 -25.41811 -23.38000 -22.16421 -21.04963 -19.67228 -18.58513 -18.16434 -17.75865 -16.99231 -16.66514 -16.56664 -16.22933 -15.27249 -14.81317 -14.52653 -14.46885 -14.31573 -14.18159 -13.92812 -13.83449 -13.53928 -13.22273 -13.00966 -12.82530 -12.75613 -12.40033 -12.16863 -11.77162 -11.62623 -11.50202 -11.29679 -11.02100 -10.62074 -10.52214 -8.45296 -8.29528 -6.46646 0.00631 0.00864 0.64273 0.90515 1.41411 1.45755 1.53503 1.85738 1.98925 2.22594 2.42922 3.01013 3.57952 3.77336 3.83326 4.24658 4.28379 4.31212 4.44452 4.53268 4.55491 4.60343 4.77455 4.81269 4.85199 5.00614 5.05750 5.14893 5.46161 5.58767 5.64950 5.87428 6.04019 6.57047 6.90890 7.24786 8.78250 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.004337 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.523528 B = 6453.864883 C = 7223.803579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.020 6.020 3 C -0.037 4.037 4 C -0.148 4.148 5 C -0.244 4.244 6 C 0.524 3.476 7 O -0.542 6.542 8 O -0.357 6.357 9 C 0.218 3.782 10 H 0.012 0.988 11 C -0.142 4.142 12 C -0.552 4.552 13 H 0.065 0.935 14 C 0.019 3.981 15 N -0.916 5.916 16 Si 0.984 3.016 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.269 1.269 20 C 0.100 3.900 21 C -0.081 4.081 22 O -0.160 6.160 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.140 0.860 26 H 0.166 0.834 27 H 0.024 0.976 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.272 0.728 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.030 -12.128 -1.061 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.216 5.784 3 C -0.194 4.194 4 C -0.176 4.176 5 C -0.248 4.248 6 C 0.372 3.628 7 O -0.435 6.435 8 O -0.273 6.273 9 C 0.165 3.835 10 H 0.030 0.970 11 C -0.199 4.199 12 C -0.589 4.589 13 H 0.084 0.916 14 C -0.181 4.181 15 N -0.553 5.553 16 Si 0.806 3.194 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.194 1.194 20 C 0.044 3.956 21 C -0.137 4.137 22 O -0.058 6.058 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.158 0.842 26 H 0.184 0.816 27 H 0.043 0.957 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.637 -12.678 -1.093 21.749 hybrid contribution 0.477 1.315 0.296 1.430 sum -17.160 -11.363 -0.797 20.597 Atomic orbital electron populations 1.23797 0.91294 1.09216 1.07170 1.85903 1.09990 0.89226 1.93260 1.24376 0.89850 0.93788 1.11417 1.22722 0.98028 0.91211 1.05604 1.20335 0.92106 0.93198 1.19112 1.20396 0.83294 0.87053 0.72096 1.90720 1.84187 1.19884 1.48749 1.86556 1.15434 1.42979 1.82376 1.20418 0.83708 0.84306 0.95075 0.97021 1.21990 1.00216 1.01804 0.95931 1.21255 0.98473 1.01552 1.37645 0.91643 1.25818 1.01846 0.94573 0.95895 1.69997 1.32519 1.07781 1.45049 0.85227 0.77100 0.78243 0.78800 1.18870 1.19946 1.19354 1.23287 0.89543 0.87539 0.95252 1.20789 1.01874 0.85187 1.05832 1.83933 1.36262 1.13078 1.72491 0.88784 0.88744 0.84210 0.81629 0.95679 0.89730 0.93752 0.91860 0.87431 0.86695 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.45 113.37 1.18 -0.37 16 2 S -0.02 -0.39 22.74 -56.49 -1.28 -1.67 16 3 C -0.04 -1.00 7.32 67.10 0.49 -0.51 16 4 C -0.15 -4.90 11.01 23.87 0.26 -4.64 16 5 C -0.24 -9.13 6.31 -19.02 -0.12 -9.25 16 6 C 0.52 24.49 7.93 70.18 0.56 25.05 16 7 O -0.54 -26.73 14.09 19.70 0.28 -26.45 16 8 O -0.36 -18.68 9.78 -56.89 -0.56 -19.23 16 9 C 0.22 12.49 2.57 29.85 0.08 12.57 16 10 H 0.01 0.76 7.16 -2.39 -0.02 0.74 16 11 C -0.14 -7.57 9.33 71.99 0.67 -6.90 16 12 C -0.55 -32.37 8.90 25.60 0.23 -32.14 16 13 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 14 C 0.02 1.04 5.30 84.65 0.45 1.49 16 15 N -0.92 -53.24 11.32 21.44 0.24 -53.00 16 16 Si 0.98 43.57 29.54 68.60 2.03 45.60 16 17 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 20 C 0.10 2.98 7.37 25.26 0.19 3.16 16 21 C -0.08 -1.85 9.88 71.24 0.70 -1.15 16 22 O -0.16 -4.20 10.19 1.05 0.01 -4.19 16 23 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.17 5.40 8.06 -2.91 -0.02 5.38 16 27 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 4.77 6.07 -2.39 -0.01 4.76 16 29 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 33 H 0.09 2.58 6.47 -2.39 -0.02 2.56 16 Total: -1.00 -69.47 306.20 6.53 -62.94 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.12 Total: 8.69 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 4.69 Total: -12.68 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.24 Total: -53.00 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -0.27 Total: -49.88 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -1.28 Total: -1.67 kcal Total: -69.47 6.53 -62.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.728 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds