Wall clock time and date at job start Mon Mar 30 2020 01:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76200 * 102.99797 * 2 1 4 4 C 1.35107 * 125.51826 * 180.02562 * 3 2 1 5 5 C 1.47094 * 105.87800 * 179.97438 * 4 3 2 6 6 C 1.47228 * 127.15664 * 179.97438 * 5 4 3 7 7 O 1.21540 * 120.00313 * 180.02562 * 6 5 4 8 8 O 1.34781 * 119.99925 * 0.02562 * 6 5 4 9 9 C 1.45206 * 117.00029 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.46660 * 329.99590 * 9 8 6 11 11 C 1.52997 * 109.47147 * 89.99827 * 9 8 6 12 12 C 1.50697 * 109.47064 * 210.00227 * 9 8 6 13 13 H 1.07998 * 120.00039 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99815 * 179.97438 * 12 9 8 15 15 N 1.31517 * 119.99524 * 179.97438 * 14 12 9 16 16 Si 1.86794 * 120.00267 * 359.97438 * 14 12 9 17 17 H 1.48506 * 109.46589 * 89.99875 * 16 14 12 18 18 H 1.48490 * 109.47303 * 209.99928 * 16 14 12 19 19 H 1.48497 * 109.46869 * 330.00523 * 16 14 12 20 20 C 1.36419 * 105.68923 * 0.23318 * 5 4 3 21 21 C 1.50693 * 125.72554 * 179.72682 * 20 5 4 22 22 O 1.33928 * 108.55021 * 359.61520 * 20 5 4 23 23 H 1.08996 * 109.47256 * 299.99641 * 1 2 3 24 24 H 1.08999 * 109.47359 * 60.00427 * 1 2 3 25 25 H 1.08999 * 109.46907 * 180.02562 * 1 2 3 26 26 H 1.07998 * 127.05822 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.47153 * 179.97438 * 11 9 8 28 28 H 1.09001 * 109.46832 * 60.00119 * 11 9 8 29 29 H 1.09004 * 109.47261 * 300.00100 * 11 9 8 30 30 H 0.97001 * 119.99599 * 179.97438 * 15 14 12 31 31 H 1.09005 * 109.47347 * 90.00108 * 21 20 5 32 32 H 1.08999 * 109.47650 * 210.00718 * 21 20 5 33 33 H 1.09007 * 109.47110 * 330.00635 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.4584 2.2343 -0.0005 5 6 3.2883 3.6954 -0.0009 6 6 4.3509 4.7144 -0.0010 7 8 4.0611 5.8947 -0.0009 8 8 5.6452 4.3383 -0.0012 9 6 6.6392 5.3968 -0.0007 10 1 6.2392 6.2711 -0.5141 11 6 6.9883 5.7679 1.4420 12 6 7.8800 4.9210 -0.7113 13 1 7.9179 3.9228 -1.1219 14 6 8.9668 5.7600 -0.8374 15 7 10.0498 5.3446 -1.4572 16 14 8.9011 7.4867 -0.1278 17 1 9.3939 7.4653 1.2729 18 1 9.7567 8.3885 -0.9399 19 1 7.5002 7.9788 -0.1521 20 6 1.9411 3.9099 0.0047 21 6 1.2645 5.2564 0.0124 22 8 1.3206 2.7230 -0.0002 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 4.3897 1.6875 -0.0013 27 1 7.7349 6.5621 1.4424 28 1 7.3884 4.8935 1.9554 29 1 6.0908 6.1121 1.9560 30 1 10.8143 5.9350 -1.5461 31 1 1.0977 5.5851 -1.0134 32 1 0.3080 5.1796 0.5295 33 1 1.8985 5.9787 0.5268 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850842632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:09 Heat of formation + Delta-G solvation = -89.246214 kcal Electronic energy + Delta-G solvation = -18217.631790 eV Core-core repulsion = 15143.114645 eV Total energy + Delta-G solvation = -3074.517145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.73015 -41.16931 -37.75026 -35.31986 -34.35227 -33.05263 -32.59961 -29.89976 -28.36435 -27.36801 -25.49994 -23.42134 -22.16447 -21.10556 -19.80315 -18.75759 -18.33216 -17.78073 -17.26499 -16.75383 -16.62012 -16.20524 -15.27109 -15.01784 -14.60884 -14.51827 -14.49216 -14.27751 -14.14748 -13.95658 -13.70102 -13.55319 -13.46322 -12.86314 -12.76426 -12.24282 -11.79223 -11.76480 -11.69192 -11.46520 -11.31168 -11.25295 -10.84584 -10.54867 -8.46498 -8.45177 -6.54876 -0.01811 0.00293 0.62160 0.89947 1.24288 1.31671 1.41841 1.76179 1.93669 2.19936 2.22021 2.87325 3.56593 3.67283 3.80627 4.19869 4.24329 4.27848 4.28244 4.39078 4.43121 4.54721 4.56527 4.60269 4.73326 4.84687 4.99406 5.07568 5.18559 5.31590 5.53475 5.65531 6.10838 6.48612 6.81515 7.09810 8.71046 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031506 B = 0.004420 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.518648 B = 6333.362083 C = 6988.310416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.024 6.024 3 C -0.036 4.036 4 C -0.150 4.150 5 C -0.245 4.245 6 C 0.528 3.472 7 O -0.535 6.535 8 O -0.348 6.348 9 C 0.194 3.806 10 H 0.036 0.964 11 C -0.163 4.163 12 C -0.543 4.543 13 H 0.043 0.957 14 C 0.030 3.970 15 N -0.930 5.930 16 Si 0.943 3.057 17 H -0.250 1.250 18 H -0.282 1.282 19 H -0.254 1.254 20 C 0.104 3.896 21 C -0.081 4.081 22 O -0.160 6.160 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.139 0.861 26 H 0.163 0.837 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.276 0.724 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.689 -6.542 5.306 24.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.213 5.787 3 C -0.193 4.193 4 C -0.178 4.178 5 C -0.249 4.249 6 C 0.376 3.624 7 O -0.429 6.429 8 O -0.264 6.264 9 C 0.140 3.860 10 H 0.054 0.946 11 C -0.221 4.221 12 C -0.581 4.581 13 H 0.062 0.938 14 C -0.169 4.169 15 N -0.568 5.568 16 Si 0.767 3.233 17 H -0.175 1.175 18 H -0.208 1.208 19 H -0.179 1.179 20 C 0.048 3.952 21 C -0.137 4.137 22 O -0.058 6.058 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.157 0.843 26 H 0.181 0.819 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.133 0.867 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.217 -7.241 5.246 23.949 hybrid contribution 0.270 1.636 -0.059 1.660 sum -21.947 -5.604 5.187 23.238 Atomic orbital electron populations 1.23796 0.91191 1.09209 1.07200 1.85974 1.10096 0.89416 1.93231 1.24342 0.89845 0.93731 1.11417 1.22726 0.97960 0.91447 1.05625 1.20283 0.92127 0.93033 1.19450 1.20337 0.82941 0.87137 0.72029 1.90717 1.84033 1.19450 1.48658 1.86587 1.15407 1.41873 1.82576 1.20698 0.84566 0.85807 0.94966 0.94625 1.22415 1.00951 1.01686 0.97001 1.20939 0.97861 1.01764 1.37486 0.93832 1.25596 0.93979 1.02654 0.94718 1.69966 1.05201 1.38788 1.42888 0.85940 0.79370 0.78778 0.79166 1.17474 1.20812 1.17858 1.23334 0.89461 0.87581 0.94873 1.20818 1.01983 0.85065 1.05861 1.83942 1.36253 1.13116 1.72445 0.88638 0.88778 0.84278 0.81907 0.92251 0.91367 0.92202 0.91454 0.87542 0.86683 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.45 113.37 1.18 -0.31 16 2 S -0.02 -0.45 22.74 -56.49 -1.28 -1.74 16 3 C -0.04 -0.95 7.32 67.10 0.49 -0.45 16 4 C -0.15 -4.85 11.01 23.87 0.26 -4.59 16 5 C -0.25 -8.67 6.31 -19.01 -0.12 -8.79 16 6 C 0.53 22.78 7.93 70.18 0.56 23.34 16 7 O -0.54 -23.63 14.09 19.71 0.28 -23.35 16 8 O -0.35 -17.22 9.78 -56.92 -0.56 -17.78 16 9 C 0.19 10.13 2.16 29.85 0.06 10.19 16 10 H 0.04 1.94 6.21 -2.39 -0.01 1.92 16 11 C -0.16 -7.40 9.03 71.98 0.65 -6.75 16 12 C -0.54 -32.79 9.48 25.60 0.24 -32.55 16 13 H 0.04 2.92 8.06 -2.91 -0.02 2.89 16 14 C 0.03 1.78 5.45 84.65 0.46 2.24 16 15 N -0.93 -57.71 13.96 21.45 0.30 -57.41 16 16 Si 0.94 44.39 24.38 68.60 1.67 46.06 16 17 H -0.25 -10.81 6.87 99.48 0.68 -10.12 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.25 -11.62 6.53 99.48 0.65 -10.97 16 20 C 0.10 2.88 7.37 25.26 0.19 3.06 16 21 C -0.08 -1.65 9.88 71.23 0.70 -0.95 16 22 O -0.16 -3.99 10.19 0.96 0.01 -3.98 16 23 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.16 5.32 8.06 -2.91 -0.02 5.30 16 27 H 0.06 2.64 3.28 -2.39 -0.01 2.63 16 28 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 30 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 2.35 6.48 -2.38 -0.02 2.33 16 Total: -1.00 -71.86 299.39 6.15 -65.71 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.05 Total: 8.04 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 4.68 Total: -15.55 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.30 Total: -57.41 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -0.27 Total: -45.12 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.67 Total: 46.06 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -1.28 Total: -1.74 kcal Total: -71.86 6.15 -65.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850842632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.539 kcal (2) G-P(sol) polarization free energy of solvation -71.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds