Wall clock time and date at job start Mon Mar 30 2020 01:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76195 * 100.00426 * 2 1 4 4 C 1.36593 * 125.60955 * 179.97438 * 3 2 1 5 5 C 1.39564 * 107.20736 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.62813 * 180.02562 * 5 4 3 7 7 C 1.38140 * 106.74637 * 0.02562 * 5 4 3 8 8 C 1.41358 * 126.02010 * 180.02562 * 7 5 4 9 9 O 1.21735 * 120.00314 * 359.97438 * 8 7 5 10 10 O 1.35023 * 119.99895 * 180.02562 * 8 7 5 11 11 C 1.42895 * 116.99856 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47064 * 30.00745 * 11 10 8 13 13 C 1.52997 * 109.47503 * 270.00044 * 11 10 8 14 14 C 1.50706 * 109.46938 * 149.99781 * 11 10 8 15 15 H 1.07998 * 119.99629 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99955 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 11 19 19 H 1.48507 * 109.46754 * 90.00468 * 18 16 14 20 20 H 1.48498 * 109.47278 * 210.00299 * 18 16 14 21 21 H 1.48498 * 109.47109 * 330.00728 * 18 16 14 22 22 O 1.34147 * 125.60814 * 0.31280 * 3 2 1 23 23 H 1.09001 * 109.46489 * 300.00020 * 1 2 3 24 24 H 1.09005 * 109.46974 * 59.99460 * 1 2 3 25 25 H 1.08995 * 109.47065 * 180.02562 * 1 2 3 26 26 H 1.07998 * 126.39587 * 0.02871 * 4 3 2 27 27 H 1.08994 * 109.46990 * 269.97677 * 6 5 4 28 28 H 1.08999 * 109.46667 * 29.97421 * 6 5 4 29 29 H 1.08999 * 109.46770 * 149.97306 * 6 5 4 30 30 H 1.09002 * 109.47153 * 60.00043 * 13 11 10 31 31 H 1.09001 * 109.46832 * 300.00234 * 13 11 10 32 32 H 1.09004 * 109.47261 * 180.02562 * 13 11 10 33 33 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 6 3.3478 2.3255 0.0005 5 6 3.1440 3.7061 0.0009 6 6 4.2091 4.7723 0.0010 7 6 1.7772 3.9067 0.0012 8 6 1.1208 5.1586 0.0012 9 8 1.7717 6.1873 0.0013 10 8 -0.2283 5.2134 0.0020 11 6 -0.8248 6.5120 0.0025 12 1 -0.1681 7.2136 -0.5118 13 6 -1.0368 6.9754 1.4451 14 6 -2.1531 6.4548 -0.7072 15 1 -2.5065 5.5203 -1.1171 16 6 -2.9175 7.5954 -0.8321 17 7 -2.4874 8.7334 -0.3326 18 14 -4.5643 7.5245 -1.7111 19 1 -5.6355 7.2132 -0.7309 20 1 -4.8423 8.8367 -2.3482 21 1 -4.5241 6.4670 -2.7529 22 8 1.1777 2.6938 0.0060 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 4.3014 1.8185 0.0005 27 1 4.4658 5.0293 1.0286 28 1 5.0956 4.4002 -0.5127 29 1 3.8364 5.6582 -0.5130 30 1 -0.0761 7.0167 1.9583 31 1 -1.6935 6.2737 1.9593 32 1 -1.4922 7.9658 1.4454 33 1 -3.0250 9.5359 -0.4208 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853107450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:28 Heat of formation + Delta-G solvation = -76.984709 kcal Electronic energy + Delta-G solvation = -18412.234126 eV Core-core repulsion = 15338.248680 eV Total energy + Delta-G solvation = -3073.985446 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.58229 -39.48331 -36.09508 -34.06376 -33.24505 -30.76634 -29.51028 -29.28832 -27.70124 -25.33955 -23.92968 -21.90797 -20.68578 -19.65427 -18.06315 -17.33605 -16.70607 -16.50167 -15.69698 -15.00695 -14.79096 -14.52631 -13.89868 -13.75814 -13.48201 -13.08608 -12.99528 -12.87637 -12.44128 -12.24526 -11.98148 -11.68995 -11.27929 -11.15394 -11.10064 -10.85299 -10.41005 -10.29443 -10.11838 -9.89995 -9.56620 -9.27410 -8.90428 -8.49488 -7.56759 -6.18788 -4.25766 0.87055 0.98265 1.63931 2.17470 3.20638 3.24228 3.29991 3.34608 3.43825 3.84431 4.34588 4.67557 4.86017 4.92941 5.12910 5.14524 5.36416 5.43513 5.55112 5.76649 5.87074 5.91127 6.11732 6.38367 6.60199 6.76452 6.89233 6.89874 7.09184 7.56509 7.70214 7.88020 8.11836 8.55712 8.85623 9.39625 10.88751 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021364 B = 0.005082 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.315153 B = 5508.492385 C = 6530.919729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 S -0.012 6.012 3 C -0.002 4.002 4 C -0.192 4.192 5 C -0.066 4.066 6 C -0.096 4.096 7 C -0.057 4.057 8 C 0.536 3.464 9 O -0.496 6.496 10 O -0.339 6.339 11 C 0.210 3.790 12 H 0.048 0.952 13 C -0.156 4.156 14 C -0.520 4.520 15 H 0.068 0.932 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.912 3.088 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.272 1.272 22 O -0.137 6.137 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.161 0.839 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.016 0.984 31 H 0.036 0.964 32 H 0.100 0.900 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.446 -15.080 1.272 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 S 0.226 5.774 3 C -0.166 4.166 4 C -0.219 4.219 5 C -0.069 4.069 6 C -0.152 4.152 7 C -0.112 4.112 8 C 0.381 3.619 9 O -0.388 6.388 10 O -0.255 6.255 11 C 0.157 3.843 12 H 0.066 0.934 13 C -0.214 4.214 14 C -0.558 4.558 15 H 0.086 0.914 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.739 3.261 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.196 1.196 22 O -0.033 6.033 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.129 0.871 26 H 0.179 0.821 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.035 0.965 31 H 0.055 0.945 32 H 0.118 0.882 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.860 -15.614 1.290 18.511 hybrid contribution -1.658 1.116 -0.353 2.030 sum 8.202 -14.498 0.937 16.683 Atomic orbital electron populations 1.23665 0.93841 1.07377 1.07738 1.85761 1.07768 0.91365 1.92528 1.24763 0.90279 0.94153 1.07450 1.21305 0.97168 0.92653 1.10787 1.20788 0.92700 0.94954 0.98447 1.20489 0.94922 0.96638 1.03196 1.20321 0.91236 0.83006 1.16595 1.17917 0.83359 0.85996 0.74608 1.90874 1.67059 1.33570 1.47344 1.86282 1.18134 1.39686 1.81420 1.20319 0.92892 0.76198 0.94870 0.93435 1.22195 0.98395 1.04245 0.96531 1.21015 1.02087 0.96192 1.36554 0.91373 1.24879 0.98647 0.94816 0.95551 1.69893 1.38245 0.99680 1.44789 0.86275 0.82657 0.77575 0.79639 1.20343 1.20907 1.19648 1.84417 1.34485 1.13760 1.70651 0.88703 0.88646 0.87109 0.82091 0.90435 0.91222 0.89007 0.96459 0.94474 0.88173 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 10.08 101.05 1.02 -0.43 16 2 S -0.01 -0.12 22.90 -107.50 -2.46 -2.59 16 3 C 0.00 -0.03 7.29 30.14 0.22 0.19 16 4 C -0.19 -2.55 10.77 -39.68 -0.43 -2.98 16 5 C -0.07 -1.03 6.22 -104.16 -0.65 -1.67 16 6 C -0.10 -1.28 9.78 36.01 0.35 -0.93 16 7 C -0.06 -1.09 6.99 -38.43 -0.27 -1.35 16 8 C 0.54 12.10 7.68 31.92 0.25 12.35 16 9 O -0.50 -11.72 13.86 -19.45 -0.27 -11.99 16 10 O -0.34 -8.58 9.73 -44.20 -0.43 -9.01 16 11 C 0.21 5.77 2.51 -27.88 -0.07 5.70 16 12 H 0.05 1.42 7.11 -51.93 -0.37 1.05 16 13 C -0.16 -4.03 9.31 37.16 0.35 -3.68 16 14 C -0.52 -14.86 8.89 -34.44 -0.31 -15.17 16 15 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.35 11.32 55.43 0.63 -24.72 16 18 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 O -0.14 -2.41 10.12 -0.39 0.00 -2.41 16 23 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 24 H 0.09 0.95 8.14 -51.91 -0.42 0.53 16 25 H 0.11 0.71 8.14 -51.92 -0.42 0.28 16 26 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.42 6.42 -51.93 -0.33 1.09 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 304.37 15.07 4.59 4.59 Total: -1.00 -30.89 304.37 -6.55 -37.44 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -3.94 Total: -1.18 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 0.37 Total: -6.33 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.63 Total: -24.72 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.70 Total: -23.42 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -0.12 SS G_CDS: -2.46 Total: -2.59 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.89 -6.55 -37.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853107450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.544 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds