Wall clock time and date at job start Mon Mar 30 2020 01:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76195 * 100.00426 * 2 1 4 4 C 1.36593 * 125.60955 * 179.97438 * 3 2 1 5 5 C 1.39564 * 107.20736 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.62813 * 180.02562 * 5 4 3 7 7 C 1.38140 * 106.74637 * 0.02562 * 5 4 3 8 8 C 1.41358 * 126.02010 * 180.02562 * 7 5 4 9 9 O 1.21735 * 120.00314 * 359.97438 * 8 7 5 10 10 O 1.35023 * 119.99895 * 180.02562 * 8 7 5 11 11 C 1.42895 * 116.99856 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47064 * 30.00745 * 11 10 8 13 13 C 1.52997 * 109.47503 * 270.00044 * 11 10 8 14 14 C 1.50706 * 109.46938 * 149.99781 * 11 10 8 15 15 H 1.07998 * 119.99629 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99955 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 11 19 19 H 1.48507 * 109.46754 * 90.00468 * 18 16 14 20 20 H 1.48498 * 109.47278 * 210.00299 * 18 16 14 21 21 H 1.48498 * 109.47109 * 330.00728 * 18 16 14 22 22 O 1.34147 * 125.60814 * 0.31280 * 3 2 1 23 23 H 1.09001 * 109.46489 * 300.00020 * 1 2 3 24 24 H 1.09005 * 109.46974 * 59.99460 * 1 2 3 25 25 H 1.08995 * 109.47065 * 180.02562 * 1 2 3 26 26 H 1.07998 * 126.39587 * 0.02871 * 4 3 2 27 27 H 1.08994 * 109.46990 * 269.97677 * 6 5 4 28 28 H 1.08999 * 109.46667 * 29.97421 * 6 5 4 29 29 H 1.08999 * 109.46770 * 149.97306 * 6 5 4 30 30 H 1.09002 * 109.47153 * 60.00043 * 13 11 10 31 31 H 1.09001 * 109.46832 * 300.00234 * 13 11 10 32 32 H 1.09004 * 109.47261 * 180.02562 * 13 11 10 33 33 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7352 0.0000 4 6 3.3478 2.3255 0.0005 5 6 3.1440 3.7061 0.0009 6 6 4.2091 4.7723 0.0010 7 6 1.7772 3.9067 0.0012 8 6 1.1208 5.1586 0.0012 9 8 1.7717 6.1873 0.0013 10 8 -0.2283 5.2134 0.0020 11 6 -0.8248 6.5120 0.0025 12 1 -0.1681 7.2136 -0.5118 13 6 -1.0368 6.9754 1.4451 14 6 -2.1531 6.4548 -0.7072 15 1 -2.5065 5.5203 -1.1171 16 6 -2.9175 7.5954 -0.8321 17 7 -2.4874 8.7334 -0.3326 18 14 -4.5643 7.5245 -1.7111 19 1 -5.6355 7.2132 -0.7309 20 1 -4.8423 8.8367 -2.3482 21 1 -4.5241 6.4670 -2.7529 22 8 1.1777 2.6938 0.0060 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 4.3014 1.8185 0.0005 27 1 4.4658 5.0293 1.0286 28 1 5.0956 4.4002 -0.5127 29 1 3.8364 5.6582 -0.5130 30 1 -0.0761 7.0167 1.9583 31 1 -1.6935 6.2737 1.9593 32 1 -1.4922 7.9658 1.4454 33 1 -3.0250 9.5359 -0.4208 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853107450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:28 Heat of formation + Delta-G solvation = -94.751903 kcal Electronic energy + Delta-G solvation = -18413.004570 eV Core-core repulsion = 15338.248680 eV Total energy + Delta-G solvation = -3074.755889 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.82068 -41.28777 -37.93821 -35.47679 -35.18362 -32.26118 -31.32105 -30.06487 -28.96746 -27.50314 -25.41011 -23.42252 -22.26210 -21.22996 -19.53426 -18.74932 -18.53299 -17.91830 -17.58104 -16.53745 -16.50308 -15.99046 -15.11940 -14.82031 -14.59444 -14.38633 -14.29486 -14.13381 -13.98560 -13.90120 -13.44933 -13.27391 -13.07484 -12.85249 -12.81108 -12.45038 -12.18706 -12.03891 -11.65042 -11.58543 -11.19423 -11.02726 -10.63507 -10.46243 -8.55089 -8.31265 -6.48799 -0.50295 -0.03177 0.78503 1.01224 1.39382 1.42109 1.53026 1.81193 1.83733 2.27815 2.48293 2.99011 3.53945 3.89872 4.07831 4.15426 4.21382 4.26394 4.45119 4.54420 4.73062 4.74586 4.77313 4.83588 4.85171 4.99150 5.09586 5.25823 5.43362 5.54621 5.59578 5.83437 5.99576 6.53583 6.82802 7.22572 8.76738 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021364 B = 0.005082 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.315153 B = 5508.492385 C = 6530.919729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 S 0.035 5.965 3 C 0.000 4.000 4 C -0.192 4.192 5 C -0.039 4.039 6 C -0.098 4.098 7 C -0.119 4.119 8 C 0.532 3.468 9 O -0.522 6.522 10 O -0.355 6.355 11 C 0.214 3.786 12 H 0.012 0.988 13 C -0.142 4.142 14 C -0.552 4.552 15 H 0.063 0.937 16 C 0.019 3.981 17 N -0.914 5.914 18 Si 0.984 3.016 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.267 1.267 22 O -0.158 6.158 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.144 0.856 26 H 0.202 0.798 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.948 -17.536 1.056 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 S 0.273 5.727 3 C -0.164 4.164 4 C -0.219 4.219 5 C -0.042 4.042 6 C -0.154 4.154 7 C -0.172 4.172 8 C 0.381 3.619 9 O -0.416 6.416 10 O -0.271 6.271 11 C 0.160 3.840 12 H 0.030 0.970 13 C -0.200 4.200 14 C -0.589 4.589 15 H 0.081 0.919 16 C -0.181 4.181 17 N -0.552 5.552 18 Si 0.807 3.193 19 H -0.191 1.191 20 H -0.199 1.199 21 H -0.192 1.192 22 O -0.055 6.055 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.162 0.838 26 H 0.219 0.781 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.383 -18.088 1.084 20.884 hybrid contribution -1.686 1.663 -0.276 2.385 sum 8.697 -16.424 0.808 18.602 Atomic orbital electron populations 1.23814 0.93263 1.09319 1.06949 1.85671 1.08354 0.87451 1.91195 1.25769 0.90517 0.95717 1.04382 1.21740 0.98491 0.91330 1.10311 1.21242 0.91552 0.96780 0.94650 1.20603 0.95510 0.95191 1.04109 1.19912 0.92255 0.82379 1.22690 1.18384 0.82176 0.87550 0.73809 1.90836 1.66923 1.34868 1.48974 1.86254 1.20196 1.38234 1.82459 1.20046 0.92151 0.76686 0.95116 0.97032 1.22016 0.98717 1.03311 0.95982 1.21261 1.03024 0.96618 1.37997 0.91897 1.25826 1.02416 0.94038 0.95835 1.70004 1.39725 1.00339 1.45113 0.85171 0.77653 0.77943 0.78565 1.19056 1.19901 1.19178 1.84374 1.35621 1.13855 1.71670 0.89432 0.89553 0.83754 0.78050 0.89160 0.87319 0.91685 0.95665 0.93880 0.89721 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.08 113.37 1.14 -1.54 16 2 S 0.03 0.62 22.90 -56.49 -1.29 -0.67 16 3 C 0.00 0.00 7.29 67.43 0.49 0.49 16 4 C -0.19 -4.55 10.77 22.20 0.24 -4.31 16 5 C -0.04 -1.18 6.22 -19.57 -0.12 -1.30 16 6 C -0.10 -2.49 9.78 71.24 0.70 -1.79 16 7 C -0.12 -4.64 6.99 23.01 0.16 -4.48 16 8 C 0.53 25.45 7.68 68.59 0.53 25.98 16 9 O -0.52 -26.22 13.86 19.07 0.26 -25.95 16 10 O -0.35 -18.99 9.73 -56.73 -0.55 -19.54 16 11 C 0.21 12.36 2.51 29.85 0.07 12.43 16 12 H 0.01 0.75 7.11 -2.39 -0.02 0.74 16 13 C -0.14 -7.67 9.31 71.98 0.67 -7.00 16 14 C -0.55 -32.58 8.89 25.60 0.23 -32.36 16 15 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 16 C 0.02 1.06 5.30 84.65 0.45 1.51 16 17 N -0.91 -53.23 11.32 21.45 0.24 -52.99 16 18 Si 0.98 43.60 29.54 68.60 2.03 45.63 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 22 O -0.16 -5.59 10.12 -7.61 -0.08 -5.66 16 23 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.14 1.37 8.14 -2.40 -0.02 1.35 16 26 H 0.20 3.03 8.06 -2.91 -0.02 3.01 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 2.05 6.42 -2.39 -0.02 2.04 16 30 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.08 4.80 6.07 -2.38 -0.01 4.79 16 33 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -70.11 304.37 6.29 -63.82 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.12 Total: 7.74 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 4.56 Total: -12.37 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.24 Total: -52.99 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.36 Total: -51.16 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -1.29 Total: -0.67 kcal Total: -70.11 6.29 -63.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853107450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.931 kcal (2) G-P(sol) polarization free energy of solvation -70.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds