Wall clock time and date at job start Mon Mar 30 2020 01:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76204 * 100.00092 * 2 1 4 4 C 1.36587 * 125.61018 * 180.02562 * 3 2 1 5 5 C 1.39560 * 107.20595 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.62619 * 180.02562 * 5 4 3 7 7 C 1.38130 * 106.75045 * 0.02562 * 5 4 3 8 8 C 1.41364 * 126.02304 * 179.97438 * 7 5 4 9 9 O 1.21735 * 120.00365 * 359.97438 * 8 7 5 10 10 O 1.35014 * 119.99996 * 179.97438 * 8 7 5 11 11 C 1.42897 * 117.00482 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47584 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.47218 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99507 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00171 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00030 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99999 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47196 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.46884 * 119.99910 * 17 15 13 20 20 H 1.48496 * 109.47098 * 240.00002 * 17 15 13 21 21 O 1.34153 * 125.60359 * 0.31237 * 3 2 1 22 22 H 1.08997 * 109.47333 * 59.99994 * 1 2 3 23 23 H 1.09002 * 109.46786 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46710 * 299.99827 * 1 2 3 25 25 H 1.08004 * 126.39676 * 0.02562 * 4 3 2 26 26 H 1.08998 * 109.47104 * 269.97827 * 6 5 4 27 27 H 1.09003 * 109.47188 * 29.97984 * 6 5 4 28 28 H 1.08999 * 109.46691 * 149.97812 * 6 5 4 29 29 H 1.09006 * 109.46613 * 300.00314 * 11 10 8 30 30 H 1.08999 * 109.46879 * 59.99864 * 11 10 8 31 31 H 1.09004 * 109.46613 * 299.99727 * 12 11 10 32 32 H 1.08999 * 109.47410 * 59.99839 * 12 11 10 33 33 H 0.96994 * 120.00249 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.3477 2.3256 -0.0005 5 6 3.1437 3.7063 -0.0009 6 6 4.2088 4.7725 -0.0020 7 6 1.7771 3.9068 0.0000 8 6 1.1205 5.1587 0.0004 9 8 1.7713 6.1874 0.0006 10 8 -0.2286 5.2134 0.0008 11 6 -0.8253 6.5119 0.0007 12 6 -2.3489 6.3731 0.0017 13 6 -2.9781 7.7425 0.0010 14 1 -2.3536 8.6236 0.0003 15 6 -4.3509 7.8704 0.0012 16 7 -5.1113 6.7974 0.0015 17 14 -5.1308 9.5679 0.0010 18 1 -4.0652 10.6022 0.0012 19 1 -5.9737 9.7251 -1.2114 20 1 -5.9733 9.7256 1.2136 21 8 1.1775 2.6938 0.0059 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 4.3013 1.8187 -0.0013 26 1 4.4660 5.0302 1.0253 27 1 5.0950 4.4002 -0.5160 28 1 3.8357 5.6581 -0.5163 29 1 -0.5097 7.0567 0.8905 30 1 -0.5103 7.0564 -0.8895 31 1 -2.6647 5.8281 -0.8879 32 1 -2.6636 5.8287 0.8921 33 1 -6.0771 6.8874 0.0020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853114502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:21 Heat of formation + Delta-G solvation = -100.671668 kcal Electronic energy + Delta-G solvation = -17849.344372 eV Core-core repulsion = 14774.331782 eV Total energy + Delta-G solvation = -3075.012589 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.86203 -41.43872 -38.05768 -35.53724 -35.27165 -32.63422 -31.67025 -30.08445 -29.11710 -27.13384 -25.04129 -23.20055 -22.57779 -21.41506 -19.62716 -18.77858 -18.30321 -18.18585 -17.69106 -17.15652 -16.55759 -16.02319 -15.10473 -14.96955 -14.77494 -14.56506 -14.43579 -14.30219 -14.10647 -13.95627 -13.48150 -13.23817 -13.09915 -12.88249 -12.66406 -12.58598 -12.07436 -11.92674 -11.57884 -11.51975 -11.40984 -11.21849 -10.64764 -10.49983 -8.58443 -8.29253 -6.42974 -0.57423 -0.04853 0.75354 0.96897 1.39937 1.41197 1.53954 1.62514 1.72431 2.23394 2.40749 3.05198 3.51062 3.78110 4.02447 4.13584 4.16737 4.17407 4.19406 4.24474 4.49203 4.64872 4.73546 4.82361 4.84809 4.98467 5.14405 5.23963 5.40480 5.43566 5.54517 5.69831 6.03119 6.55715 6.70713 7.27115 8.83950 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023973 B = 0.003935 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.723546 B = 7113.586323 C = 8250.257368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 S 0.035 5.965 3 C 0.004 3.996 4 C -0.194 4.194 5 C -0.032 4.032 6 C -0.099 4.099 7 C -0.124 4.124 8 C 0.541 3.459 9 O -0.512 6.512 10 O -0.360 6.360 11 C 0.088 3.912 12 C 0.032 3.968 13 C -0.550 4.550 14 H 0.067 0.933 15 C 0.005 3.995 16 N -0.928 5.928 17 Si 0.977 3.023 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.275 1.275 21 O -0.160 6.160 22 H 0.086 0.914 23 H 0.143 0.857 24 H 0.086 0.914 25 H 0.202 0.798 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.004 0.996 32 H 0.004 0.996 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.647 -14.371 0.004 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.334 4.334 2 S 0.274 5.726 3 C -0.160 4.160 4 C -0.221 4.221 5 C -0.035 4.035 6 C -0.155 4.155 7 C -0.178 4.178 8 C 0.390 3.610 9 O -0.405 6.405 10 O -0.276 6.276 11 C 0.015 3.985 12 C -0.006 4.006 13 C -0.587 4.587 14 H 0.086 0.914 15 C -0.193 4.193 16 N -0.567 5.567 17 Si 0.800 3.200 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.200 1.200 21 O -0.058 6.058 22 H 0.106 0.894 23 H 0.161 0.839 24 H 0.105 0.895 25 H 0.219 0.781 26 H 0.110 0.890 27 H 0.125 0.875 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.961 -15.185 0.005 23.520 hybrid contribution -1.746 1.856 0.011 2.548 sum 16.215 -13.329 0.016 20.990 Atomic orbital electron populations 1.23821 0.93330 1.09322 1.06975 1.85745 1.08228 0.87696 1.90973 1.25762 0.90545 0.95620 1.04063 1.21764 0.98413 0.91552 1.10322 1.21254 0.91579 0.96671 0.94008 1.20634 0.95448 0.95190 1.04237 1.19838 0.92185 0.82406 1.23343 1.18238 0.81226 0.87655 0.73915 1.90871 1.66684 1.34443 1.48515 1.86279 1.21292 1.36654 1.83422 1.22860 0.94490 0.79863 1.01295 1.18993 0.87700 0.97387 0.96490 1.21402 0.92459 0.92357 1.52498 0.91444 1.26001 0.97672 1.01717 0.93953 1.70107 1.05319 1.30878 1.50429 0.85227 0.78357 0.78374 0.78048 1.18475 1.19987 1.19996 1.84393 1.35621 1.13941 1.71807 0.89449 0.83924 0.89458 0.78142 0.89033 0.87467 0.91151 0.91957 0.91950 0.97756 0.97751 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.08 113.37 1.14 -1.44 16 2 S 0.03 0.57 22.90 -56.49 -1.29 -0.72 16 3 C 0.00 0.10 7.29 67.43 0.49 0.59 16 4 C -0.19 -3.97 10.77 22.20 0.24 -3.73 16 5 C -0.03 -0.82 6.22 -19.57 -0.12 -0.94 16 6 C -0.10 -2.03 9.78 71.24 0.70 -1.33 16 7 C -0.12 -4.19 6.99 23.01 0.16 -4.02 16 8 C 0.54 21.62 7.72 68.59 0.53 22.15 16 9 O -0.51 -20.94 14.40 19.07 0.27 -20.67 16 10 O -0.36 -16.29 10.10 -56.64 -0.57 -16.86 16 11 C 0.09 4.21 5.32 71.98 0.38 4.59 16 12 C 0.03 1.76 5.34 29.85 0.16 1.92 16 13 C -0.55 -31.85 9.11 25.60 0.23 -31.62 16 14 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 15 C 0.01 0.31 5.46 84.65 0.46 0.77 16 16 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 17 Si 0.98 44.09 29.54 68.60 2.03 46.11 16 18 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 O -0.16 -5.08 10.12 -7.73 -0.08 -5.16 16 22 H 0.09 1.55 8.14 -2.40 -0.02 1.53 16 23 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.79 6.42 -2.39 -0.02 1.77 16 29 H 0.06 2.89 8.13 -2.38 -0.02 2.87 16 30 H 0.06 2.89 8.13 -2.39 -0.02 2.87 16 31 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -69.81 309.50 6.13 -63.67 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: 1.11 Total: 2.82 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 4.38 Total: -13.05 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.14 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.38 Total: -42.69 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -1.29 Total: -0.72 kcal Total: -69.81 6.13 -63.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853114502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.997 kcal (2) G-P(sol) polarization free energy of solvation -69.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds