Wall clock time and date at job start Mon Mar 30 2020 00:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86805 * 120.00202 * 2 1 4 4 H 1.48498 * 109.47015 * 270.00452 * 3 2 1 5 5 H 1.48503 * 109.46641 * 30.00497 * 3 2 1 6 6 H 1.48495 * 109.47350 * 150.00275 * 3 2 1 7 7 C 1.38807 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99953 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99783 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00108 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47500 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99454 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00202 * 180.02562 * 11 10 9 14 14 N 1.40095 * 120.00078 * 180.02562 * 13 11 10 15 15 C 1.34777 * 120.00077 * 179.97438 * 14 13 11 16 16 O 1.21569 * 119.99954 * 0.02562 * 15 14 13 17 17 C 1.47709 * 119.99914 * 179.97438 * 15 14 13 18 18 C 1.41500 * 126.51714 * 179.97438 * 17 15 14 19 19 C 1.35365 * 105.50387 * 180.02562 * 18 17 15 20 20 N 1.35033 * 107.23063 * 359.97438 * 19 18 17 21 21 H 0.97000 * 124.88971 * 179.97438 * 20 19 18 22 22 N 1.28474 * 110.22757 * 0.02562 * 20 19 18 23 23 H 0.97000 * 119.99902 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47026 * 59.99820 * 10 9 7 25 25 H 1.09009 * 109.47067 * 300.00629 * 10 9 7 26 26 H 0.97004 * 119.99822 * 359.97438 * 13 11 10 27 27 H 0.97004 * 120.00100 * 359.97438 * 14 13 11 28 28 H 1.08001 * 127.24942 * 0.02562 * 18 17 15 29 29 H 1.08004 * 126.38789 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4402 0.6999 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7912 -5.5022 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 7 2.3529 -7.6551 -0.0019 15 6 3.2097 -8.6955 -0.0020 16 8 4.4088 -8.4955 -0.0006 17 6 2.6917 -10.0788 -0.0026 18 6 3.4614 -11.2662 -0.0033 19 6 2.5637 -12.2793 -0.0043 20 7 1.3331 -11.7234 -0.0036 21 1 0.4999 -12.2200 -0.0044 22 7 1.4246 -10.4419 -0.0028 23 1 -0.4850 0.8401 0.0004 24 1 3.1245 -3.7314 0.8895 25 1 3.1245 -3.7313 -0.8905 26 1 3.8010 -6.1835 -0.0004 27 1 1.3961 -7.8148 -0.0026 28 1 4.5384 -11.3471 -0.0031 29 1 2.7895 -13.3355 -0.0046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855359568.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:28 Heat of formation + Delta-G solvation = 39.564023 kcal Electronic energy + Delta-G solvation = -16944.711678 eV Core-core repulsion = 13804.532572 eV Total energy + Delta-G solvation = -3140.179106 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.00922 -40.07634 -38.58480 -35.20738 -32.63314 -32.44846 -31.58770 -30.89808 -28.58586 -25.51972 -24.35963 -22.12375 -21.39124 -20.43201 -18.94147 -18.01978 -17.67943 -17.19007 -16.16299 -15.87632 -15.34455 -14.81676 -14.61457 -14.43155 -14.19391 -14.05920 -13.58168 -13.37371 -12.64435 -12.33488 -11.36626 -11.16262 -11.07216 -11.04032 -10.80942 -10.59221 -9.86799 -9.86112 -9.72417 -9.60502 -9.08272 -8.29614 -8.29202 -6.54082 -6.23832 -3.95277 1.20488 1.75311 1.76915 2.51874 2.81755 3.18181 3.20214 3.22892 3.29654 3.41497 3.90159 4.17843 4.29381 4.49173 4.79471 5.07869 5.11868 5.24377 5.35909 5.56837 5.79694 5.94104 6.07100 6.51325 6.67065 6.76577 7.38350 7.58488 7.62634 7.88770 8.33548 8.50824 9.21794 10.83572 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.063701 B = 0.003029 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.448034 B = 9240.682352 C = 9664.986190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.075 0.925 9 S -0.052 6.052 10 C -0.145 4.145 11 C 0.535 3.465 12 O -0.514 6.514 13 N -0.530 5.530 14 N -0.505 5.505 15 C 0.603 3.397 16 O -0.535 6.535 17 C -0.006 4.006 18 C -0.174 4.174 19 C -0.014 4.014 20 N -0.379 5.379 21 H 0.449 0.551 22 N -0.254 5.254 23 H 0.269 0.731 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.431 0.569 27 H 0.438 0.562 28 H 0.166 0.834 29 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 -24.003 -0.013 24.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.686 4.686 8 H 0.093 0.907 9 S 0.175 5.825 10 C -0.297 4.297 11 C 0.321 3.679 12 O -0.386 6.386 13 N -0.282 5.282 14 N -0.252 5.252 15 C 0.387 3.613 16 O -0.409 6.409 17 C -0.168 4.168 18 C -0.202 4.202 19 C -0.158 4.158 20 N -0.094 5.094 21 H 0.293 0.707 22 N -0.092 5.092 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.273 0.727 27 H 0.281 0.719 28 H 0.184 0.816 29 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.207 -23.599 -0.007 23.816 hybrid contribution 2.279 0.525 -0.010 2.338 sum 5.485 -23.075 -0.016 23.718 Atomic orbital electron populations 1.70012 1.05980 1.27558 1.46737 1.24994 0.95033 0.99065 0.94409 0.86143 0.79422 0.81416 0.78385 1.20235 1.20751 1.19620 1.22879 0.95046 0.91453 1.59185 0.90678 1.85439 1.04156 0.96163 1.96784 1.23486 1.07206 0.93108 1.05854 1.20711 0.86441 0.85295 0.75443 1.90733 1.14998 1.84949 1.47957 1.45191 1.10576 0.93956 1.78431 1.44639 1.10679 0.95639 1.74245 1.16812 0.85497 0.81627 0.77364 1.90819 1.14279 1.84498 1.51347 1.21569 0.89901 0.94248 1.11065 1.21793 1.01285 0.89429 1.07713 1.22996 0.84456 1.00761 1.07626 1.43385 1.09373 1.03849 1.52756 0.70666 1.73618 1.21251 0.95871 1.18417 0.92124 0.88370 0.88380 0.72714 0.71930 0.81635 0.79499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.89 13.22 55.49 0.73 -25.16 15 2 C 0.07 2.10 5.50 -17.43 -0.10 2.00 15 3 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 15 4 H -0.28 -6.27 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 7 C -0.54 -15.08 9.50 30.94 0.29 -14.79 15 8 H 0.08 1.99 7.80 -52.49 -0.41 1.58 15 9 S -0.05 -1.37 20.57 -107.50 -2.21 -3.58 15 10 C -0.14 -2.85 6.16 36.00 0.22 -2.63 15 11 C 0.53 10.00 7.96 -10.99 -0.09 9.92 15 12 O -0.51 -11.35 15.70 5.56 0.09 -11.27 15 13 N -0.53 -8.13 6.26 31.22 0.20 -7.93 15 14 N -0.51 -7.35 6.26 30.50 0.19 -7.16 15 15 C 0.60 8.41 7.94 -12.39 -0.10 8.31 15 16 O -0.54 -8.49 16.76 5.30 0.09 -8.40 15 17 C -0.01 -0.06 7.13 -82.77 -0.59 -0.65 15 18 C -0.17 -1.51 10.81 -39.36 -0.43 -1.93 15 19 C -0.01 -0.08 12.02 -17.17 -0.21 -0.28 15 20 N -0.38 -2.29 6.83 30.47 0.21 -2.09 15 21 H 0.45 0.99 8.96 -190.44 -1.71 -0.72 15 22 N -0.25 -2.60 11.92 33.42 0.40 -2.20 15 23 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 24 H 0.10 1.76 8.14 -51.91 -0.42 1.34 15 25 H 0.10 1.75 8.14 -51.91 -0.42 1.33 15 26 H 0.43 5.79 8.00 -182.60 -1.46 4.33 15 27 H 0.44 6.32 7.73 -182.60 -1.41 4.91 15 28 H 0.17 1.25 8.06 -52.49 -0.42 0.83 15 29 H 0.19 0.19 8.06 -52.48 -0.42 -0.23 15 LS Contribution 288.62 15.07 4.35 4.35 Total: -1.00 -36.57 288.62 -7.79 -44.36 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.81 Total: 2.92 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -0.99 Total: -0.05 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 1.73 Total: -44.53 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.18 Total: -19.67 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.21 Total: -3.58 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -36.57 -7.79 -44.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855359568.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.922 kcal (2) G-P(sol) polarization free energy of solvation -36.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds