Wall clock time and date at job start Mon Mar 30 2020 00:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86805 * 120.00202 * 2 1 4 4 H 1.48498 * 109.47015 * 270.00452 * 3 2 1 5 5 H 1.48503 * 109.46641 * 30.00497 * 3 2 1 6 6 H 1.48495 * 109.47350 * 150.00275 * 3 2 1 7 7 C 1.38807 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99953 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99783 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00108 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47500 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99454 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00202 * 180.02562 * 11 10 9 14 14 N 1.40095 * 120.00078 * 180.02562 * 13 11 10 15 15 C 1.34777 * 120.00077 * 179.97438 * 14 13 11 16 16 O 1.21569 * 119.99954 * 0.02562 * 15 14 13 17 17 C 1.47709 * 119.99914 * 179.97438 * 15 14 13 18 18 C 1.41500 * 126.51714 * 179.97438 * 17 15 14 19 19 C 1.35365 * 105.50387 * 180.02562 * 18 17 15 20 20 N 1.35033 * 107.23063 * 359.97438 * 19 18 17 21 21 H 0.97000 * 124.88971 * 179.97438 * 20 19 18 22 22 N 1.28474 * 110.22757 * 0.02562 * 20 19 18 23 23 H 0.97000 * 119.99902 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47026 * 59.99820 * 10 9 7 25 25 H 1.09009 * 109.47067 * 300.00629 * 10 9 7 26 26 H 0.97004 * 119.99822 * 359.97438 * 13 11 10 27 27 H 0.97004 * 120.00100 * 359.97438 * 14 13 11 28 28 H 1.08001 * 127.24942 * 0.02562 * 18 17 15 29 29 H 1.08004 * 126.38789 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4402 0.6999 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7912 -5.5022 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 7 2.3529 -7.6551 -0.0019 15 6 3.2097 -8.6955 -0.0020 16 8 4.4088 -8.4955 -0.0006 17 6 2.6917 -10.0788 -0.0026 18 6 3.4614 -11.2662 -0.0033 19 6 2.5637 -12.2793 -0.0043 20 7 1.3331 -11.7234 -0.0036 21 1 0.4999 -12.2200 -0.0044 22 7 1.4246 -10.4419 -0.0028 23 1 -0.4850 0.8401 0.0004 24 1 3.1245 -3.7314 0.8895 25 1 3.1245 -3.7313 -0.8905 26 1 3.8010 -6.1835 -0.0004 27 1 1.3961 -7.8148 -0.0026 28 1 4.5384 -11.3471 -0.0031 29 1 2.7895 -13.3355 -0.0046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855359568.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:27 Heat of formation + Delta-G solvation = 9.572788 kcal Electronic energy + Delta-G solvation = -16946.012196 eV Core-core repulsion = 13804.532572 eV Total energy + Delta-G solvation = -3141.479623 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.63884 -41.37275 -39.93242 -36.52776 -34.57543 -33.63335 -32.53962 -31.67287 -30.01475 -27.65456 -25.31487 -22.77661 -22.66445 -21.53576 -19.86237 -19.52036 -18.92243 -18.48914 -17.18666 -17.09663 -16.86527 -16.56337 -16.18961 -15.63202 -15.58086 -14.96754 -14.63885 -14.54303 -14.10292 -13.85755 -13.16267 -12.88443 -12.63751 -12.53767 -12.03616 -11.83776 -11.68922 -11.28530 -11.13089 -10.56657 -10.30163 -10.17977 -9.57363 -8.66532 -8.34118 -6.12200 0.33853 0.50063 1.19395 1.35138 1.39089 1.44652 1.52460 1.64207 2.04331 2.19992 2.27183 2.85796 3.00768 3.20949 3.38455 3.80041 4.03196 4.17375 4.25131 4.48464 4.74374 4.75739 5.30328 5.38343 5.44347 5.55466 6.13639 6.21336 6.32918 6.64926 6.83588 7.07835 7.17351 8.75012 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.063701 B = 0.003029 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.448034 B = 9240.682352 C = 9664.986190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.086 0.914 9 S -0.136 6.136 10 C -0.122 4.122 11 C 0.541 3.459 12 O -0.553 6.553 13 N -0.514 5.514 14 N -0.509 5.509 15 C 0.606 3.394 16 O -0.558 6.558 17 C -0.038 4.038 18 C -0.197 4.197 19 C 0.019 3.981 20 N -0.361 5.361 21 H 0.466 0.534 22 N -0.279 5.279 23 H 0.271 0.729 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.441 0.559 27 H 0.438 0.562 28 H 0.171 0.829 29 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.136 -25.673 -0.013 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.696 4.696 8 H 0.104 0.896 9 S 0.091 5.909 10 C -0.274 4.274 11 C 0.327 3.673 12 O -0.429 6.429 13 N -0.264 5.264 14 N -0.256 5.256 15 C 0.392 3.608 16 O -0.434 6.434 17 C -0.199 4.199 18 C -0.225 4.225 19 C -0.126 4.126 20 N -0.079 5.079 21 H 0.315 0.685 22 N -0.118 5.118 23 H 0.080 0.920 24 H 0.139 0.861 25 H 0.139 0.861 26 H 0.286 0.714 27 H 0.281 0.719 28 H 0.188 0.812 29 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 4.813 -25.305 -0.007 25.759 hybrid contribution 1.808 0.787 -0.011 1.972 sum 6.620 -24.518 -0.018 25.396 Atomic orbital electron populations 1.70171 1.07945 1.28659 1.47964 1.26100 0.95936 1.03238 0.93677 0.84955 0.78217 0.76057 0.78764 1.19361 1.20371 1.18205 1.23238 0.95569 0.91851 1.58957 0.89587 1.85580 1.09432 0.98820 1.97105 1.23283 1.04324 0.91804 1.08021 1.20389 0.85988 0.85599 0.75315 1.90723 1.16612 1.85402 1.50144 1.44820 1.10613 0.94271 1.76724 1.44818 1.10924 0.94989 1.74871 1.17256 0.85106 0.82338 0.76099 1.90790 1.15174 1.85050 1.52404 1.21396 0.91150 0.93437 1.13877 1.22064 1.02182 0.89225 1.09069 1.23678 0.82899 1.02211 1.03798 1.43536 1.10837 1.02815 1.50687 0.68543 1.73548 1.20826 0.97995 1.19415 0.91961 0.86113 0.86102 0.71428 0.71938 0.81156 0.74504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.38 13.22 21.65 0.29 -55.10 15 2 C 0.02 0.87 5.50 84.86 0.47 1.34 15 3 Si 1.00 43.27 29.55 68.60 2.03 45.30 15 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 15 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 7 C -0.55 -30.82 9.50 67.96 0.65 -30.18 15 8 H 0.09 4.47 7.80 -2.91 -0.02 4.45 15 9 S -0.14 -7.40 20.57 -56.49 -1.16 -8.56 15 10 C -0.12 -4.74 6.16 71.24 0.44 -4.30 15 11 C 0.54 20.23 7.96 87.66 0.70 20.93 15 12 O -0.55 -25.01 15.70 -3.02 -0.05 -25.06 15 13 N -0.51 -15.55 6.26 -173.54 -1.09 -16.63 15 14 N -0.51 -14.85 6.26 -175.70 -1.10 -15.95 15 15 C 0.61 16.86 7.94 86.75 0.69 17.54 15 16 O -0.56 -17.63 16.76 -3.93 -0.07 -17.70 15 17 C -0.04 -0.86 7.13 42.46 0.30 -0.55 15 18 C -0.20 -3.04 10.81 22.41 0.24 -2.79 15 19 C 0.02 0.13 12.02 83.54 1.00 1.13 15 20 N -0.36 -3.39 6.83 -57.51 -0.39 -3.78 15 21 H 0.47 0.62 8.96 -219.99 -1.97 -1.35 15 22 N -0.28 -5.38 11.92 -48.18 -0.57 -5.96 15 23 H 0.27 15.33 8.31 -92.71 -0.77 14.56 15 24 H 0.12 4.16 8.14 -2.39 -0.02 4.14 15 25 H 0.12 4.15 8.14 -2.39 -0.02 4.13 15 26 H 0.44 11.44 8.00 -213.32 -1.71 9.73 15 27 H 0.44 12.90 7.73 -213.32 -1.65 11.25 15 28 H 0.17 2.33 8.06 -2.91 -0.02 2.31 15 29 H 0.24 -0.89 8.06 -2.91 -0.02 -0.92 15 Total: -1.00 -81.70 288.62 -1.71 -83.41 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -4.09 Total: 16.90 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 4.49 Total: 3.12 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -2.87 Total: -97.42 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.11 Total: -42.76 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -7.40 SS G_CDS: -1.16 Total: -8.56 kcal Total: -81.70 -1.71 -83.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855359568.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.986 kcal (2) G-P(sol) polarization free energy of solvation -81.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds