Wall clock time and date at job start Mon Mar 30 2020 01:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00432 * 3 2 1 5 5 H 1.48507 * 109.46904 * 30.00095 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99919 * 3 2 1 7 7 C 1.37871 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00152 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99801 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99496 * 179.97438 * 11 10 9 14 14 N 1.40109 * 119.99481 * 180.02562 * 13 11 10 15 15 C 1.38466 * 119.99709 * 180.27739 * 14 13 11 16 16 N 1.32476 * 119.20383 * 359.45405 * 15 14 13 17 17 C 1.32285 * 120.75090 * 179.76157 * 16 15 14 18 18 C 1.38695 * 119.18386 * 0.49920 * 17 16 15 19 19 Cl 1.73602 * 120.73716 * 179.72690 * 18 17 16 20 20 C 1.38700 * 118.53506 * 359.75585 * 18 17 16 21 21 N 1.32291 * 119.17853 * 359.97438 * 20 18 17 22 22 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47174 * 60.00647 * 9 7 2 24 24 H 1.08998 * 109.47585 * 299.99945 * 9 7 2 25 25 H 1.09000 * 109.46887 * 59.99628 * 10 9 7 26 26 H 1.09007 * 109.46700 * 300.00171 * 10 9 7 27 27 H 0.97000 * 120.00718 * 0.02562 * 13 11 10 28 28 H 0.97001 * 119.99794 * 359.97438 * 14 13 11 29 29 H 1.08004 * 120.40661 * 180.25117 * 17 16 15 30 30 H 1.07991 * 120.41186 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5286 -2.6364 -0.0009 12 8 6.1349 -1.5861 -0.0005 13 7 6.2024 -3.8036 -0.0003 14 7 7.6035 -3.8036 0.0003 15 6 8.2958 -5.0028 -0.0049 16 7 7.6176 -6.1407 0.0007 17 6 8.2478 -7.3038 -0.0087 18 6 9.6346 -7.3215 -0.0140 19 17 10.5027 -8.8249 -0.0193 20 6 10.3127 -6.1116 -0.0144 21 7 9.6204 -4.9843 -0.0103 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6804 0.8889 24 1 3.8746 -0.6799 -0.8911 25 1 3.6579 -3.1505 -0.8907 26 1 3.6586 -3.1501 0.8893 27 1 5.7175 -4.6437 -0.0003 28 1 8.0885 -2.9635 -0.0001 29 1 7.6892 -8.2282 -0.0082 30 1 11.3924 -6.0900 -0.0181 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857358444.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:59 Heat of formation + Delta-G solvation = 43.946401 kcal Electronic energy + Delta-G solvation = -17066.884207 eV Core-core repulsion = 13924.851429 eV Total energy + Delta-G solvation = -3142.032778 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.43578 -39.59485 -37.14450 -36.19816 -34.22512 -33.61850 -32.55210 -31.36751 -29.50667 -26.16538 -25.22345 -23.70294 -21.77598 -20.33137 -18.90208 -18.40746 -17.22173 -16.85120 -16.58731 -15.92058 -15.80237 -15.16561 -14.76402 -14.12875 -14.04443 -13.68874 -13.31173 -12.70774 -12.62860 -11.88904 -11.75965 -11.63605 -11.52693 -11.38338 -11.03696 -10.31119 -10.16783 -9.90288 -9.72537 -9.64607 -9.57396 -9.26639 -8.56521 -7.93717 -6.08299 -4.08126 0.54039 0.63331 1.44855 1.76661 2.78836 3.34054 3.34801 3.35452 3.41234 3.50643 3.84120 4.05738 4.45713 4.50972 4.55721 5.09302 5.23124 5.26857 5.66820 5.89159 5.92824 6.24606 6.49306 6.64602 6.85816 7.24953 7.31726 7.46989 7.69351 7.77339 8.37852 8.46940 8.93897 9.53860 11.04272 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.061625 B = 0.002889 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.254654 B = 9690.713570 C =10124.506498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.002 3.998 10 C -0.108 4.108 11 C 0.512 3.488 12 O -0.536 6.536 13 N -0.522 5.522 14 N -0.482 5.482 15 C 0.571 3.429 16 N -0.562 5.562 17 C 0.220 3.780 18 C -0.220 4.220 19 Cl -0.049 7.049 20 C 0.220 3.780 21 N -0.555 5.555 22 H 0.264 0.736 23 H 0.026 0.974 24 H 0.021 0.979 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.432 0.568 28 H 0.448 0.552 29 H 0.179 0.821 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.468 -17.730 -0.009 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.036 4.036 10 C -0.150 4.150 11 C 0.301 3.699 12 O -0.409 6.409 13 N -0.274 5.274 14 N -0.211 5.211 15 C 0.214 3.786 16 N -0.286 5.286 17 C 0.051 3.949 18 C -0.256 4.256 19 Cl -0.021 7.021 20 C 0.051 3.949 21 N -0.278 5.278 22 H 0.074 0.926 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.275 0.725 28 H 0.294 0.706 29 H 0.196 0.804 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 20.056 -15.967 0.008 25.635 hybrid contribution 0.943 -0.193 -0.037 0.964 sum 20.999 -16.160 -0.030 26.497 Atomic orbital electron populations 1.69903 1.06289 1.27079 1.50681 1.24959 0.94717 0.99232 0.94237 0.86801 0.80588 0.83405 0.78773 1.20202 1.21383 1.18556 1.21050 0.88964 0.94719 1.51792 0.90722 1.19416 0.96669 0.89546 0.97971 1.21698 0.84943 1.04035 1.04282 1.22160 0.91578 0.81452 0.74705 1.90696 1.70146 1.30962 1.49137 1.45509 0.92049 1.11615 1.78218 1.42693 0.95899 1.05378 1.77135 1.19030 0.85320 0.85588 0.88702 1.67926 1.40179 0.97424 1.23057 1.22942 0.89735 0.95832 0.86379 1.22321 0.95039 0.89979 1.18259 1.98372 1.75968 1.30286 1.97425 1.22931 1.00641 0.84673 0.86656 1.67887 1.06083 1.30972 1.22898 0.92612 0.95581 0.96025 0.88727 0.88700 0.72500 0.70561 0.80424 0.80418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.53 -14.57 9.66 -34.44 -0.33 -14.90 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 10 C -0.11 -1.93 5.64 -27.88 -0.16 -2.09 16 11 C 0.51 8.75 7.95 -10.99 -0.09 8.66 16 12 O -0.54 -11.08 15.82 5.56 0.09 -10.99 16 13 N -0.52 -7.13 6.28 31.22 0.20 -6.94 16 14 N -0.48 -6.40 6.42 29.77 0.19 -6.21 16 15 C 0.57 6.93 8.54 -322.77 -2.76 4.17 16 16 N -0.56 -6.13 9.38 -13.90 -0.13 -6.26 16 17 C 0.22 1.82 11.12 -17.19 -0.19 1.63 16 18 C -0.22 -1.70 6.36 -39.24 -0.25 -1.95 16 19 Cl -0.05 -0.32 29.02 -51.86 -1.50 -1.82 16 20 C 0.22 1.82 11.12 -17.18 -0.19 1.63 16 21 N -0.55 -6.15 10.46 -13.90 -0.15 -6.29 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 24 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 25 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 26 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.43 5.01 7.91 -182.59 -1.44 3.57 16 28 H 0.45 6.08 8.12 -182.59 -1.48 4.59 16 29 H 0.18 0.94 8.06 -52.48 -0.42 0.52 16 30 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 288.15 15.07 4.34 4.34 Total: -1.00 -32.99 288.15 -9.98 -42.97 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.97 Total: 1.41 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -4.15 Total: -0.96 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.89 Total: -52.33 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.50 Total: -1.82 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.99 -9.98 -42.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857358444.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.913 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds