Wall clock time and date at job start Mon Mar 30 2020 01:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00432 * 3 2 1 5 5 H 1.48507 * 109.46904 * 30.00095 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99919 * 3 2 1 7 7 C 1.37871 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00152 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99801 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99496 * 179.97438 * 11 10 9 14 14 N 1.40109 * 119.99481 * 180.02562 * 13 11 10 15 15 C 1.38466 * 119.99709 * 180.27739 * 14 13 11 16 16 N 1.32476 * 119.20383 * 359.45405 * 15 14 13 17 17 C 1.32285 * 120.75090 * 179.76157 * 16 15 14 18 18 C 1.38695 * 119.18386 * 0.49920 * 17 16 15 19 19 Cl 1.73602 * 120.73716 * 179.72690 * 18 17 16 20 20 C 1.38700 * 118.53506 * 359.75585 * 18 17 16 21 21 N 1.32291 * 119.17853 * 359.97438 * 20 18 17 22 22 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47174 * 60.00647 * 9 7 2 24 24 H 1.08998 * 109.47585 * 299.99945 * 9 7 2 25 25 H 1.09000 * 109.46887 * 59.99628 * 10 9 7 26 26 H 1.09007 * 109.46700 * 300.00171 * 10 9 7 27 27 H 0.97000 * 120.00718 * 0.02562 * 13 11 10 28 28 H 0.97001 * 119.99794 * 359.97438 * 14 13 11 29 29 H 1.08004 * 120.40661 * 180.25117 * 17 16 15 30 30 H 1.07991 * 120.41186 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5286 -2.6364 -0.0009 12 8 6.1349 -1.5861 -0.0005 13 7 6.2024 -3.8036 -0.0003 14 7 7.6035 -3.8036 0.0003 15 6 8.2958 -5.0028 -0.0049 16 7 7.6176 -6.1407 0.0007 17 6 8.2478 -7.3038 -0.0087 18 6 9.6346 -7.3215 -0.0140 19 17 10.5027 -8.8249 -0.0193 20 6 10.3127 -6.1116 -0.0144 21 7 9.6204 -4.9843 -0.0103 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6804 0.8889 24 1 3.8746 -0.6799 -0.8911 25 1 3.6579 -3.1505 -0.8907 26 1 3.6586 -3.1501 0.8893 27 1 5.7175 -4.6437 -0.0003 28 1 8.0885 -2.9635 -0.0001 29 1 7.6892 -8.2282 -0.0082 30 1 11.3924 -6.0900 -0.0181 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857358444.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:58 Heat of formation + Delta-G solvation = 22.212863 kcal Electronic energy + Delta-G solvation = -17067.826644 eV Core-core repulsion = 13924.851429 eV Total energy + Delta-G solvation = -3142.975215 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.22011 -40.87883 -37.86483 -37.18954 -35.55893 -34.97445 -33.77288 -33.02611 -30.54271 -27.87907 -25.97426 -24.60803 -23.37118 -21.74376 -19.93805 -19.47909 -18.90375 -17.82256 -17.56846 -16.96459 -16.95000 -16.33419 -16.23199 -15.52333 -15.22415 -14.67953 -14.65437 -14.61991 -13.71596 -13.42777 -12.93203 -12.63366 -12.55617 -12.33585 -12.16357 -12.14543 -11.98113 -11.76945 -11.40013 -11.14284 -10.76790 -10.58128 -10.33935 -8.89768 -8.29803 -6.32788 -0.20769 -0.04614 0.48687 1.07670 1.35052 1.37655 1.47549 1.51395 2.36166 2.46125 2.58848 3.06275 3.10243 3.43893 3.54957 3.86554 3.96521 4.34579 4.47140 4.62517 4.87034 4.98884 5.34565 5.36991 5.43839 5.61620 5.76176 5.88435 6.24152 6.40020 6.73919 6.85154 7.24869 7.32548 8.85658 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.061625 B = 0.002889 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.254654 B = 9690.713570 C =10124.506498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.004 3.996 10 C -0.102 4.102 11 C 0.520 3.480 12 O -0.577 6.577 13 N -0.502 5.502 14 N -0.494 5.494 15 C 0.557 3.443 16 N -0.574 5.574 17 C 0.215 3.785 18 C -0.209 4.209 19 Cl -0.032 7.032 20 C 0.215 3.785 21 N -0.570 5.570 22 H 0.267 0.733 23 H 0.014 0.986 24 H 0.013 0.987 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.443 0.557 28 H 0.445 0.555 29 H 0.208 0.792 30 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.373 -19.317 -0.046 29.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.762 3.238 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.565 4.565 8 H 0.072 0.928 9 C -0.034 4.034 10 C -0.143 4.143 11 C 0.308 3.692 12 O -0.454 6.454 13 N -0.253 5.253 14 N -0.225 5.225 15 C 0.200 3.800 16 N -0.298 5.298 17 C 0.047 3.953 18 C -0.244 4.244 19 Cl -0.003 7.003 20 C 0.048 3.952 21 N -0.294 5.294 22 H 0.076 0.924 23 H 0.032 0.968 24 H 0.031 0.969 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.288 0.712 28 H 0.290 0.710 29 H 0.224 0.776 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 21.999 -17.663 -0.031 28.212 hybrid contribution 0.460 0.038 -0.026 0.462 sum 22.459 -17.625 -0.057 28.549 Atomic orbital electron populations 1.70019 1.07801 1.28064 1.52528 1.25785 0.95459 1.02819 0.94377 0.85849 0.79307 0.79594 0.79067 1.19478 1.20681 1.18335 1.21399 0.91083 0.93834 1.50207 0.92758 1.19263 0.94044 0.93275 0.96845 1.21473 0.85911 1.00614 1.06270 1.21703 0.91184 0.81643 0.74657 1.90681 1.70738 1.32509 1.51494 1.45011 0.92892 1.10992 1.76389 1.42667 0.95068 1.05909 1.78860 1.19115 0.85806 0.85499 0.89563 1.67942 1.40660 0.97775 1.23453 1.23475 0.90349 0.95973 0.85470 1.22396 0.95085 0.90557 1.16381 1.98389 1.75571 1.29135 1.97236 1.23469 1.01892 0.84141 0.85728 1.67894 1.05784 1.32380 1.23359 0.92420 0.96776 0.96891 0.86776 0.86802 0.71193 0.71014 0.77562 0.77552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 2 C 0.01 0.77 5.47 84.65 0.46 1.24 16 3 Si 0.94 45.75 27.47 68.60 1.88 47.64 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 7 C -0.53 -29.32 9.66 25.60 0.25 -29.07 16 8 H 0.05 3.16 7.99 -2.91 -0.02 3.14 16 9 C 0.00 0.18 3.33 29.85 0.10 0.28 16 10 C -0.10 -3.52 5.64 29.85 0.17 -3.35 16 11 C 0.52 17.31 7.95 87.66 0.70 18.01 16 12 O -0.58 -23.77 15.82 -3.01 -0.05 -23.82 16 13 N -0.50 -13.14 6.28 -173.54 -1.09 -14.23 16 14 N -0.49 -12.77 6.42 -59.73 -0.38 -13.15 16 15 C 0.56 12.82 8.54 261.47 2.23 15.05 16 16 N -0.57 -11.46 9.38 -197.88 -1.86 -13.32 16 17 C 0.22 3.00 11.12 84.73 0.94 3.94 16 18 C -0.21 -2.67 6.36 22.49 0.14 -2.53 16 19 Cl -0.03 -0.32 29.02 -2.72 -0.08 -0.40 16 20 C 0.22 3.06 11.12 84.73 0.94 4.00 16 21 N -0.57 -11.82 10.46 -197.88 -2.07 -13.89 16 22 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 23 H 0.01 0.69 7.16 -2.39 -0.02 0.67 16 24 H 0.01 0.62 7.53 -2.39 -0.02 0.60 16 25 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 26 H 0.11 3.50 8.14 -2.38 -0.02 3.48 16 27 H 0.44 9.52 7.91 -213.31 -1.69 7.84 16 28 H 0.44 12.03 8.12 -213.31 -1.73 10.30 16 29 H 0.21 1.51 8.06 -2.91 -0.02 1.48 16 30 H 0.21 1.53 8.06 -2.92 -0.02 1.51 16 Total: -1.00 -71.14 288.15 0.32 -70.81 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -2.27 Total: 10.66 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 5.93 Total: 7.57 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -5.10 Total: -112.46 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.05 Total: -23.82 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.64 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Total: -71.14 0.32 -70.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857358444.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.027 kcal (2) G-P(sol) polarization free energy of solvation -71.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds