Wall clock time and date at job start Mon Mar 30 2020 01:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34159 * 127.02334 * 2 1 4 4 O 1.34221 * 109.13845 * 179.87043 * 3 2 1 5 5 C 1.33623 * 110.93038 * 0.41772 * 4 3 2 6 6 C 1.36506 * 108.38040 * 359.75131 * 5 4 3 7 7 C 1.47225 * 127.20009 * 179.97438 * 6 5 4 8 8 O 1.21538 * 119.99951 * 180.02562 * 7 6 5 9 9 O 1.34769 * 120.00275 * 0.02562 * 7 6 5 10 10 C 1.45201 * 117.00200 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47130 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47313 * 180.02562 * 11 10 9 13 13 S 1.80995 * 109.47452 * 180.02562 * 12 11 10 14 14 C 1.76203 * 100.00188 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99547 * 359.97438 * 14 13 12 16 16 C 1.38795 * 119.99814 * 180.02562 * 14 13 12 17 17 N 1.31631 * 119.99679 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00331 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46878 * 90.00072 * 18 16 14 20 20 H 1.48497 * 109.47340 * 210.00170 * 18 16 14 21 21 H 1.48498 * 109.47062 * 330.00430 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.68075 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68175 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68156 * 1 2 3 25 25 H 1.07994 * 125.43178 * 0.02562 * 3 2 1 26 26 H 1.07992 * 125.81273 * 179.77208 * 5 4 3 27 27 H 1.08993 * 109.47288 * 299.99829 * 10 9 7 28 28 H 1.09001 * 109.47300 * 59.99840 * 10 9 7 29 29 H 1.09003 * 109.47152 * 300.00076 * 11 10 9 30 30 H 1.09001 * 109.46870 * 59.99931 * 11 10 9 31 31 H 1.09003 * 109.47057 * 300.00114 * 12 11 10 32 32 H 1.09001 * 109.47225 * 60.00128 * 12 11 10 33 33 H 0.97007 * 119.99863 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0711 0.0000 4 8 3.5922 0.6589 0.0029 5 6 3.6632 -0.6754 -0.0043 6 6 2.3925 -1.1741 -0.0066 7 6 1.9923 -2.5909 -0.0146 8 8 0.8142 -2.8896 -0.0162 9 8 2.9323 -3.5566 -0.0200 10 6 2.4650 -4.9314 -0.0284 11 6 3.6666 -5.8785 -0.0343 12 6 3.1743 -7.3270 -0.0437 13 16 4.5957 -8.4475 -0.0499 14 6 3.7619 -9.9997 -0.0594 15 1 2.6824 -10.0327 -0.0595 16 6 4.4924 -11.1798 -0.0657 17 7 3.8694 -12.3394 -0.0733 18 14 6.3595 -11.1226 -0.0648 19 1 6.8537 -11.1152 1.3355 20 1 6.8916 -12.3155 -0.7713 21 1 6.8173 -9.8917 -0.7578 22 1 -0.3633 -0.0057 1.0277 23 1 -0.3633 -0.8871 -0.5188 24 1 -0.3633 0.8929 -0.5089 25 1 1.9893 2.1008 0.0004 26 1 4.5713 -1.2599 -0.0074 27 1 1.8613 -5.1153 0.8603 28 1 1.8618 -5.1047 -0.9195 29 1 4.2699 -5.6944 -0.9232 30 1 4.2701 -5.7052 0.8567 31 1 2.5707 -7.5114 0.8450 32 1 2.5710 -7.5000 -0.9349 33 1 4.3799 -13.1642 -0.0773 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859782367.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:40 Heat of formation + Delta-G solvation = -111.489256 kcal Electronic energy + Delta-G solvation = -17133.957154 eV Core-core repulsion = 14058.475478 eV Total energy + Delta-G solvation = -3075.481675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.59500 -41.26643 -37.83423 -35.01848 -34.83831 -34.68864 -31.84757 -28.29815 -28.18359 -27.70746 -25.05324 -22.79169 -21.84454 -21.17756 -19.66132 -19.02773 -18.12473 -17.83304 -17.11006 -17.07586 -16.82533 -16.09681 -15.94178 -15.32894 -14.94473 -14.47152 -14.31945 -14.22221 -13.97753 -13.94466 -13.49769 -13.36764 -13.05110 -12.64860 -12.52677 -12.42661 -12.27812 -11.83900 -11.61244 -11.55525 -11.17078 -10.70357 -10.61605 -9.67465 -9.01275 -8.52597 -6.24939 0.10783 0.97781 1.04369 1.33001 1.39559 1.49714 1.79466 1.95588 2.06470 2.24531 2.65132 2.85487 3.47578 3.62342 3.81749 3.89959 3.93818 4.11535 4.27038 4.27207 4.43508 4.54379 4.63922 4.77004 4.89992 4.96924 4.97779 5.01942 5.09386 5.31537 5.48323 5.68778 5.92999 6.09766 6.64265 6.90849 8.60549 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.049107 B = 0.002856 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.042640 B = 9800.232403 C =10339.222686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.162 4.162 3 C -0.026 4.026 4 O -0.170 6.170 5 C 0.080 3.920 6 C -0.269 4.269 7 C 0.534 3.466 8 O -0.537 6.537 9 O -0.351 6.351 10 C 0.081 3.919 11 C -0.086 4.086 12 C -0.075 4.075 13 S -0.203 6.203 14 C -0.526 4.526 15 H 0.050 0.950 16 C 0.036 3.964 17 N -0.923 5.923 18 Si 0.927 3.073 19 H -0.260 1.260 20 H -0.264 1.264 21 H -0.226 1.226 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.250 0.750 26 H 0.250 0.750 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 29.544 0.041 29.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.163 4.163 3 C -0.091 4.091 4 O -0.063 6.063 5 C 0.009 3.991 6 C -0.272 4.272 7 C 0.381 3.619 8 O -0.429 6.429 9 O -0.267 6.267 10 C 0.005 3.995 11 C -0.124 4.124 12 C -0.224 4.224 13 S 0.025 5.975 14 C -0.674 4.674 15 H 0.069 0.931 16 C -0.169 4.169 17 N -0.561 5.561 18 Si 0.748 3.252 19 H -0.185 1.185 20 H -0.188 1.188 21 H -0.149 1.149 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.113 0.887 25 H 0.266 0.734 26 H 0.266 0.734 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.191 29.632 0.036 29.656 hybrid contribution -1.541 -1.607 0.054 2.227 sum -0.350 28.024 0.090 28.027 Atomic orbital electron populations 1.20238 0.88000 1.03304 1.02733 1.21661 0.97929 0.90336 1.06354 1.24415 0.78527 1.00723 1.05459 1.83875 1.30240 1.22184 1.70040 1.25254 0.99184 0.80770 0.93844 1.20649 0.95884 0.90008 1.20638 1.20418 0.83456 0.86098 0.71900 1.90816 1.20032 1.84222 1.47839 1.86476 1.39209 1.16981 1.84081 1.23036 0.97221 0.76235 1.02996 1.21145 0.96837 0.89187 1.05276 1.22977 0.99218 0.95968 1.04215 1.83767 1.14806 1.01386 1.97585 1.22359 0.94926 0.91554 1.58548 0.93145 1.25819 1.04561 0.93812 0.92659 1.70046 1.38644 0.98302 1.49085 0.85691 0.78573 0.80660 0.80288 1.18502 1.18817 1.14876 0.91051 0.92808 0.88710 0.73373 0.73382 0.90963 0.90965 0.89343 0.89329 0.91131 0.91084 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 10.00 71.24 0.71 -0.69 16 2 C -0.16 -2.84 6.37 -18.48 -0.12 -2.96 16 3 C -0.03 -0.29 11.96 66.89 0.80 0.51 16 4 O -0.17 -2.19 10.52 4.67 0.05 -2.14 16 5 C 0.08 1.13 11.94 67.41 0.80 1.94 16 6 C -0.27 -5.65 6.31 -19.01 -0.12 -5.77 16 7 C 0.53 14.39 7.95 70.18 0.56 14.95 16 8 O -0.54 -17.55 15.20 19.71 0.30 -17.25 16 9 O -0.35 -8.92 10.07 -56.80 -0.57 -9.49 16 10 C 0.08 2.15 5.48 71.98 0.39 2.54 16 11 C -0.09 -2.43 5.60 30.59 0.17 -2.26 16 12 C -0.08 -2.80 5.67 71.98 0.41 -2.39 16 13 S -0.20 -9.56 19.41 -56.49 -1.10 -10.66 16 14 C -0.53 -30.90 10.04 67.95 0.68 -30.22 16 15 H 0.05 3.23 8.03 -2.91 -0.02 3.21 16 16 C 0.04 2.12 5.50 84.86 0.47 2.59 16 17 N -0.92 -56.88 13.97 21.65 0.30 -56.58 16 18 Si 0.93 43.54 27.74 68.60 1.90 45.44 16 19 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.23 -10.08 6.74 99.48 0.67 -9.41 16 22 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.05 1.18 6.91 -2.39 -0.02 1.16 16 24 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.25 0.45 8.06 -2.91 -0.02 0.43 16 26 H 0.25 1.85 8.06 -2.91 -0.02 1.83 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.28 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -73.31 309.19 6.72 -66.60 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 1.07 Total: 5.84 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 4.76 Total: -21.76 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.30 Total: -56.58 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.22 Total: -28.88 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.90 Total: 45.44 kcal Atomic # 16 Polarization: -9.56 SS G_CDS: -1.10 Total: -10.66 kcal Total: -73.31 6.72 -66.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859782367.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.893 kcal (2) G-P(sol) polarization free energy of solvation -73.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds