Wall clock time and date at job start Mon Mar 30 2020 01:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47077 * 270.00959 * 3 2 1 5 5 H 1.48503 * 109.46871 * 30.00839 * 3 2 1 6 6 H 1.48497 * 109.47187 * 150.00321 * 3 2 1 7 7 C 1.38805 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99652 * 359.97438 * 7 2 1 9 9 S 1.76195 * 119.99958 * 179.97438 * 7 2 1 10 10 C 1.80999 * 99.99913 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47206 * 179.97438 * 10 9 7 12 12 O 1.20825 * 120.00071 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99784 * 179.97438 * 11 10 9 14 14 C 1.45202 * 116.99450 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46867 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47055 * 180.02562 * 16 15 14 18 18 C 1.34509 * 125.79251 * 90.00216 * 17 16 15 19 19 C 1.41382 * 106.84493 * 180.02562 * 18 17 16 20 20 C 1.34525 * 106.83881 * 0.02562 * 19 18 17 21 21 O 1.34301 * 108.41856 * 359.73761 * 20 19 18 22 22 H 0.96995 * 120.00511 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47147 * 59.99968 * 10 9 7 24 24 H 1.09003 * 109.46894 * 299.99994 * 10 9 7 25 25 H 1.09001 * 109.46860 * 60.00352 * 14 13 11 26 26 H 1.08993 * 109.47426 * 299.99714 * 14 13 11 27 27 H 1.09001 * 109.46801 * 300.00397 * 15 14 13 28 28 H 1.09001 * 109.46998 * 59.99993 * 15 14 13 29 29 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 30 30 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 31 31 H 1.08003 * 126.57870 * 359.96205 * 18 17 16 32 32 H 1.07996 * 126.58216 * 179.97438 * 19 18 17 33 33 H 1.07999 * 125.79058 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5731 -3.2324 -0.0021 12 8 6.3412 -2.2997 -0.0035 13 8 6.0438 -4.4895 -0.0016 14 6 7.4866 -4.6531 -0.0033 15 6 7.8309 -6.1439 -0.0018 16 6 9.3511 -6.3163 -0.0030 17 6 9.6901 -7.7846 -0.0021 18 6 9.8662 -8.5520 -1.0928 19 6 10.1668 -9.8547 -0.6329 20 6 10.1559 -9.8056 0.7114 21 8 9.8720 -8.5481 1.0878 22 1 -0.4851 0.8400 0.0004 23 1 3.6434 -3.4317 -0.8907 24 1 3.6441 -3.4313 0.8893 25 1 7.9066 -4.1827 0.8857 26 1 7.9044 -4.1843 -0.8943 27 1 7.4131 -6.6123 0.8894 28 1 7.4107 -6.6147 -0.8906 29 1 9.7691 -5.8477 -0.8939 30 1 9.7708 -5.8456 0.8860 31 1 9.7911 -8.2342 -2.1223 32 1 10.3660 -10.7228 -1.2436 33 1 10.3472 -10.6357 1.3753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861016937.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:22 Heat of formation + Delta-G solvation = -85.086095 kcal Electronic energy + Delta-G solvation = -16911.702044 eV Core-core repulsion = 13837.365296 eV Total energy + Delta-G solvation = -3074.336748 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.85389 -40.13791 -36.64746 -34.89711 -33.17222 -32.49706 -30.52826 -29.39496 -26.15803 -25.65529 -22.32045 -22.05106 -21.16120 -20.57673 -17.97380 -17.71397 -17.16036 -16.70327 -16.32489 -15.78461 -15.21486 -15.03212 -14.66983 -14.09507 -13.62100 -13.22372 -13.12617 -12.95783 -12.89325 -12.78109 -12.50401 -12.09609 -11.56211 -11.32871 -11.30464 -11.05701 -10.74332 -10.48319 -10.23797 -10.17716 -9.88302 -9.06042 -8.76945 -8.62244 -7.02982 -6.33931 -4.08280 1.40535 2.27634 2.42567 2.52715 2.69638 3.11589 3.28941 3.45050 3.51668 4.25615 4.27967 4.54313 4.61728 4.70362 4.78252 4.83633 4.88607 5.04736 5.08168 5.12309 5.26020 5.43200 5.51013 5.56800 5.65391 5.75439 5.78609 5.86975 5.95794 6.19439 6.57974 6.83197 7.88882 8.03355 8.37672 9.11062 10.75089 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.065363 B = 0.002601 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.271762 B =10763.655545 C =10988.074213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.097 3.903 3 Si 0.857 3.143 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.522 4.522 8 H 0.092 0.908 9 S -0.140 6.140 10 C -0.100 4.100 11 C 0.479 3.521 12 O -0.490 6.490 13 O -0.359 6.359 14 C 0.066 3.934 15 C -0.117 4.117 16 C -0.037 4.037 17 C -0.007 4.007 18 C -0.210 4.210 19 C -0.214 4.214 20 C -0.044 4.044 21 O -0.176 6.176 22 H 0.272 0.728 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.690 -17.405 -0.295 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.670 4.670 8 H 0.110 0.890 9 S 0.086 5.914 10 C -0.248 4.248 11 C 0.320 3.680 12 O -0.376 6.376 13 O -0.276 6.276 14 C -0.008 4.008 15 C -0.154 4.154 16 C -0.075 4.075 17 C -0.057 4.057 18 C -0.229 4.229 19 C -0.233 4.233 20 C -0.112 4.112 21 O -0.072 6.072 22 H 0.082 0.918 23 H 0.128 0.872 24 H 0.129 0.871 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 20.482 -16.053 0.001 26.023 hybrid contribution -0.617 -0.514 -0.253 0.842 sum 19.865 -16.567 -0.252 25.868 Atomic orbital electron populations 1.69929 1.05871 1.27880 1.47625 1.24704 0.94472 0.98961 0.93104 0.86740 0.81851 0.83296 0.79977 1.19130 1.19799 1.15959 1.22264 0.87679 0.97768 1.59270 0.89038 1.84794 1.10101 0.98976 1.97564 1.23010 0.89885 1.04475 1.07395 1.23261 0.91985 0.80371 0.72363 1.90663 1.58924 1.43745 1.44299 1.86494 1.25337 1.31109 1.84708 1.22947 0.78260 0.96672 1.02920 1.21551 0.94353 0.94836 1.04674 1.20002 0.95901 0.86712 1.04859 1.22325 1.04881 0.94281 0.84229 1.21637 1.08126 0.93559 0.99594 1.21858 1.07873 0.98734 0.94859 1.24045 1.05564 0.85377 0.96191 1.84029 1.68506 1.19532 1.35107 0.91811 0.87166 0.87121 0.91016 0.90988 0.90237 0.90109 0.88306 0.89482 0.83385 0.83473 0.78137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.12 13.97 55.49 0.78 -25.34 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.34 27.74 -169.99 -4.71 16.62 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 7 C -0.52 -14.80 10.04 30.94 0.31 -14.49 16 8 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.48 16 10 C -0.10 -1.94 6.27 36.01 0.23 -1.71 16 11 C 0.48 8.67 7.98 36.01 0.29 8.95 16 12 O -0.49 -10.09 15.61 -18.75 -0.29 -10.38 16 13 O -0.36 -5.36 10.22 -39.26 -0.40 -5.76 16 14 C 0.07 0.76 5.47 37.16 0.20 0.96 16 15 C -0.12 -1.04 5.58 -26.73 -0.15 -1.19 16 16 C -0.04 -0.28 5.75 -27.89 -0.16 -0.44 16 17 C -0.01 -0.06 6.57 -35.63 -0.23 -0.30 16 18 C -0.21 -1.82 10.81 -39.70 -0.43 -2.25 16 19 C -0.21 -1.69 10.91 -39.70 -0.43 -2.13 16 20 C -0.04 -0.34 12.09 29.42 0.36 0.02 16 21 O -0.18 -1.73 10.65 5.69 0.06 -1.67 16 22 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.11 2.00 8.14 -51.91 -0.42 1.57 16 24 H 0.11 2.01 8.14 -51.91 -0.42 1.59 16 25 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 26 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.15 1.05 8.06 -52.48 -0.42 0.62 16 32 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.20 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 310.28 15.07 4.68 4.68 Total: -1.00 -33.02 310.28 -6.24 -39.25 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -4.23 Total: -2.03 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -0.12 Total: -9.89 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.78 Total: -25.34 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.63 Total: -17.81 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.02 -6.24 -39.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861016937.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.834 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds