Wall clock time and date at job start Mon Mar 30 2020 01:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47077 * 270.00959 * 3 2 1 5 5 H 1.48503 * 109.46871 * 30.00839 * 3 2 1 6 6 H 1.48497 * 109.47187 * 150.00321 * 3 2 1 7 7 C 1.38805 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99652 * 359.97438 * 7 2 1 9 9 S 1.76195 * 119.99958 * 179.97438 * 7 2 1 10 10 C 1.80999 * 99.99913 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47206 * 179.97438 * 10 9 7 12 12 O 1.20825 * 120.00071 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99784 * 179.97438 * 11 10 9 14 14 C 1.45202 * 116.99450 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46867 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47055 * 180.02562 * 16 15 14 18 18 C 1.34509 * 125.79251 * 90.00216 * 17 16 15 19 19 C 1.41382 * 106.84493 * 180.02562 * 18 17 16 20 20 C 1.34525 * 106.83881 * 0.02562 * 19 18 17 21 21 O 1.34301 * 108.41856 * 359.73761 * 20 19 18 22 22 H 0.96995 * 120.00511 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47147 * 59.99968 * 10 9 7 24 24 H 1.09003 * 109.46894 * 299.99994 * 10 9 7 25 25 H 1.09001 * 109.46860 * 60.00352 * 14 13 11 26 26 H 1.08993 * 109.47426 * 299.99714 * 14 13 11 27 27 H 1.09001 * 109.46801 * 300.00397 * 15 14 13 28 28 H 1.09001 * 109.46998 * 59.99993 * 15 14 13 29 29 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 30 30 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 31 31 H 1.08003 * 126.57870 * 359.96205 * 18 17 16 32 32 H 1.07996 * 126.58216 * 179.97438 * 19 18 17 33 33 H 1.07999 * 125.79058 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5731 -3.2324 -0.0021 12 8 6.3412 -2.2997 -0.0035 13 8 6.0438 -4.4895 -0.0016 14 6 7.4866 -4.6531 -0.0033 15 6 7.8309 -6.1439 -0.0018 16 6 9.3511 -6.3163 -0.0030 17 6 9.6901 -7.7846 -0.0021 18 6 9.8662 -8.5520 -1.0928 19 6 10.1668 -9.8547 -0.6329 20 6 10.1559 -9.8056 0.7114 21 8 9.8720 -8.5481 1.0878 22 1 -0.4851 0.8400 0.0004 23 1 3.6434 -3.4317 -0.8907 24 1 3.6441 -3.4313 0.8893 25 1 7.9066 -4.1827 0.8857 26 1 7.9044 -4.1843 -0.8943 27 1 7.4131 -6.6123 0.8894 28 1 7.4107 -6.6147 -0.8906 29 1 9.7691 -5.8477 -0.8939 30 1 9.7708 -5.8456 0.8860 31 1 9.7911 -8.2342 -2.1223 32 1 10.3660 -10.7228 -1.2436 33 1 10.3472 -10.6357 1.3753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861016937.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:22 Heat of formation + Delta-G solvation = -104.312326 kcal Electronic energy + Delta-G solvation = -16912.535756 eV Core-core repulsion = 13837.365296 eV Total energy + Delta-G solvation = -3075.170460 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.46251 -41.49898 -37.88831 -35.72173 -34.69004 -33.79407 -31.75140 -30.42030 -27.90609 -26.87540 -23.17365 -22.65559 -22.42766 -21.22912 -19.92991 -18.79837 -18.14628 -17.88126 -17.31446 -17.04910 -16.84813 -16.14041 -16.00340 -15.42247 -14.92130 -14.65871 -14.26339 -13.74955 -13.72767 -13.63291 -13.50133 -13.34951 -13.11179 -13.00858 -12.75360 -12.39805 -12.11190 -11.89110 -11.63188 -11.49874 -11.18160 -10.83698 -10.62808 -9.37171 -9.06449 -8.52431 -6.26078 0.72531 0.85296 1.08430 1.32351 1.37535 1.50136 1.70545 1.86409 2.16324 2.24041 2.64835 2.85609 3.54592 3.78853 3.85008 4.09315 4.11569 4.16626 4.21513 4.23133 4.40547 4.42678 4.46033 4.63806 4.89826 4.97071 5.05085 5.11071 5.24391 5.36259 5.63409 5.69723 6.11555 6.22999 6.64546 6.91405 8.59859 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.065363 B = 0.002601 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.271762 B =10763.655545 C =10988.074213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.234 1.234 7 C -0.532 4.532 8 H 0.065 0.935 9 S -0.162 6.162 10 C -0.092 4.092 11 C 0.491 3.509 12 O -0.517 6.517 13 O -0.353 6.353 14 C 0.060 3.940 15 C -0.105 4.105 16 C -0.032 4.032 17 C -0.027 4.027 18 C -0.221 4.221 19 C -0.230 4.230 20 C -0.048 4.048 21 O -0.195 6.195 22 H 0.278 0.722 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.385 -18.041 -0.419 27.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.183 1.183 6 H -0.158 1.158 7 C -0.680 4.680 8 H 0.083 0.917 9 S 0.065 5.935 10 C -0.240 4.240 11 C 0.333 3.667 12 O -0.406 6.406 13 O -0.270 6.270 14 C -0.013 4.013 15 C -0.143 4.143 16 C -0.069 4.069 17 C -0.076 4.076 18 C -0.240 4.240 19 C -0.249 4.249 20 C -0.114 4.114 21 O -0.092 6.092 22 H 0.088 0.912 23 H 0.143 0.857 24 H 0.143 0.857 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.178 0.822 32 H 0.183 0.817 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 22.181 -16.718 -0.124 27.776 hybrid contribution -1.084 -0.542 -0.223 1.232 sum 21.097 -17.260 -0.348 27.260 Atomic orbital electron populations 1.70010 1.07352 1.29164 1.48713 1.25584 0.95307 1.02364 0.92761 0.85860 0.80722 0.79422 0.80328 1.18534 1.18338 1.15760 1.22416 0.89842 0.96916 1.58781 0.91708 1.84615 1.07026 1.04216 1.97689 1.22948 0.91682 1.00418 1.08930 1.22804 0.91043 0.81023 0.71825 1.90659 1.59347 1.44759 1.45820 1.86466 1.27766 1.28899 1.83893 1.23297 0.75918 0.98490 1.03615 1.21470 0.95509 0.92812 1.04474 1.20002 0.94642 0.86236 1.06042 1.22594 1.05798 0.94931 0.84298 1.21960 1.07783 0.94046 1.00186 1.22204 1.08081 0.99177 0.95394 1.24756 1.04422 0.85329 0.96938 1.84020 1.68949 1.20489 1.35781 0.91250 0.85654 0.85697 0.90616 0.90110 0.90852 0.89923 0.86605 0.88902 0.82249 0.81712 0.75080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.99 13.97 21.65 0.30 -54.68 16 2 C 0.05 2.63 5.50 84.86 0.47 3.10 16 3 Si 0.92 43.75 27.74 68.60 1.90 45.65 16 4 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.23 -11.03 6.74 99.48 0.67 -10.36 16 7 C -0.53 -30.39 10.04 67.96 0.68 -29.70 16 8 H 0.06 3.92 8.03 -2.91 -0.02 3.90 16 9 S -0.16 -7.91 18.55 -56.49 -1.05 -8.96 16 10 C -0.09 -3.45 6.27 71.24 0.45 -3.00 16 11 C 0.49 16.96 7.98 71.24 0.57 17.53 16 12 O -0.52 -20.55 15.61 21.97 0.34 -20.21 16 13 O -0.35 -9.87 10.22 -51.44 -0.53 -10.40 16 14 C 0.06 1.26 5.47 71.98 0.39 1.65 16 15 C -0.11 -1.68 5.58 30.60 0.17 -1.51 16 16 C -0.03 -0.42 5.75 29.85 0.17 -0.25 16 17 C -0.03 -0.45 6.57 24.83 0.16 -0.29 16 18 C -0.22 -3.51 10.81 22.19 0.24 -3.27 16 19 C -0.23 -3.26 10.91 22.19 0.24 -3.02 16 20 C -0.05 -0.65 12.09 66.97 0.81 0.16 16 21 O -0.20 -3.62 10.65 -2.55 -0.03 -3.65 16 22 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 23 H 0.13 4.36 8.14 -2.39 -0.02 4.34 16 24 H 0.12 4.37 8.14 -2.39 -0.02 4.35 16 25 H 0.08 1.55 8.13 -2.39 -0.02 1.53 16 26 H 0.08 1.58 8.13 -2.39 -0.02 1.56 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.23 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -70.13 310.28 6.37 -63.76 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.06 Total: 7.08 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 4.35 Total: -18.60 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.30 Total: -54.68 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.21 Total: -34.25 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.90 Total: 45.65 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.05 Total: -8.96 kcal Total: -70.13 6.37 -63.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861016937.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.551 kcal (2) G-P(sol) polarization free energy of solvation -70.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds