Wall clock time and date at job start Mon Mar 30 2020 01:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00194 * 2 1 4 4 H 1.48507 * 109.47565 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47056 * 299.99791 * 3 2 1 6 6 H 1.48498 * 109.47421 * 59.99772 * 3 2 1 7 7 C 1.37887 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99870 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99806 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47028 * 179.97438 * 9 7 2 11 11 C 1.39673 * 120.00373 * 179.97438 * 10 9 7 12 12 C 1.38892 * 120.05893 * 0.25282 * 11 10 9 13 13 C 1.38298 * 119.90186 * 180.27484 * 12 11 10 14 14 F 1.35096 * 119.98981 * 179.74417 * 13 12 11 15 15 C 1.38547 * 120.02268 * 359.76618 * 13 12 11 16 16 N 1.48000 * 119.93731 * 179.97438 * 15 13 12 17 17 O 1.21799 * 119.99667 * 179.97438 * 16 15 13 18 18 O 1.21799 * 120.00155 * 359.97438 * 16 15 13 19 19 C 1.38232 * 120.12071 * 359.95822 * 15 13 12 20 20 C 1.38137 * 120.09966 * 0.02562 * 19 15 13 21 21 C 1.50696 * 120.01215 * 180.02562 * 20 19 15 22 22 O 1.42903 * 109.47131 * 359.97438 * 21 20 19 23 23 H 0.96998 * 119.99964 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47245 * 59.99526 * 9 7 2 25 25 H 1.09001 * 109.47009 * 299.99229 * 9 7 2 26 26 H 0.97006 * 120.00080 * 359.97438 * 10 9 7 27 27 H 1.07999 * 120.04486 * 0.04638 * 12 11 10 28 28 H 1.07994 * 119.94688 * 180.02562 * 19 15 13 29 29 H 1.09008 * 109.47144 * 239.99966 * 21 20 19 30 30 H 1.08999 * 109.47358 * 119.99555 * 21 20 19 31 31 H 0.96700 * 114.00311 * 300.00591 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7375 -4.9296 0.0011 12 6 0.3722 -5.1849 -0.0037 13 6 -0.0852 -6.4900 0.0026 14 9 -1.4127 -6.7403 0.0032 15 6 0.8177 -7.5409 0.0088 16 7 0.3261 -8.9369 0.0161 17 8 1.1188 -9.8616 0.0210 18 8 -0.8711 -9.1610 0.0172 19 6 2.1766 -7.2880 0.0078 20 6 2.6390 -5.9863 0.0011 21 6 4.1209 -5.7128 -0.0005 22 8 4.8339 -6.9513 0.0061 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5568 0.8904 26 1 3.1567 -3.4355 0.0002 27 1 -0.3311 -4.3653 -0.0086 28 1 2.8779 -8.1092 0.0121 29 1 4.3852 -5.1371 0.8866 30 1 4.3849 -5.1461 -0.8934 31 1 4.6474 -7.5084 0.7742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865732393.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:27 Heat of formation + Delta-G solvation = -82.593219 kcal Electronic energy + Delta-G solvation = -20153.169552 eV Core-core repulsion = 16545.020478 eV Total energy + Delta-G solvation = -3608.149074 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.07795 -41.78879 -39.93589 -36.91073 -36.21793 -35.68454 -33.11259 -31.38497 -30.58657 -27.57573 -26.51097 -25.12431 -23.56801 -21.68291 -21.62866 -19.06753 -18.55716 -18.18957 -17.36237 -17.25713 -16.73282 -16.40676 -15.67808 -15.40495 -15.09744 -14.95485 -14.34054 -14.03832 -13.73881 -13.57928 -12.97809 -12.46672 -12.38645 -12.00604 -11.50797 -11.29555 -11.21074 -11.15704 -10.88896 -10.87621 -10.54334 -10.49238 -10.29358 -9.76231 -9.02051 -8.89117 -7.56589 -6.51129 -4.60025 0.18206 0.92630 1.63271 1.70439 3.04247 3.12535 3.14626 3.29044 3.47850 3.91844 4.09696 4.12710 4.35250 4.55459 4.87393 4.91098 5.14673 5.18525 5.31573 5.56122 5.68060 5.74136 5.92733 6.26014 6.55161 6.73342 6.90518 7.14835 7.32389 7.45239 7.54347 7.94096 7.95347 8.45620 9.08724 10.58971 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024607 B = 0.004720 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.626523 B = 5930.740076 C = 7045.976652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.552 4.552 8 H 0.067 0.933 9 C 0.235 3.765 10 N -0.685 5.685 11 C 0.308 3.692 12 C -0.241 4.241 13 C 0.222 3.778 14 F -0.107 7.107 15 C -0.167 4.167 16 N 0.052 4.948 17 O -0.188 6.188 18 O -0.179 6.179 19 C 0.024 3.976 20 C -0.233 4.233 21 C 0.131 3.869 22 O -0.560 6.560 23 H 0.270 0.730 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.403 0.597 27 H 0.162 0.838 28 H 0.158 0.842 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.369 -8.840 1.223 10.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.590 4.590 8 H 0.085 0.915 9 C 0.115 3.885 10 N -0.301 5.301 11 C 0.188 3.812 12 C -0.265 4.265 13 C 0.199 3.801 14 F -0.085 7.085 15 C -0.256 4.256 16 N 0.564 4.436 17 O -0.397 6.397 18 O -0.390 6.390 19 C 0.003 3.997 20 C -0.239 4.239 21 C 0.053 3.947 22 O -0.365 6.365 23 H 0.080 0.920 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.239 0.761 27 H 0.180 0.820 28 H 0.176 0.824 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 5.485 -7.578 0.661 9.378 hybrid contribution -0.084 0.514 0.494 0.718 sum 5.401 -7.064 1.155 8.967 Atomic orbital electron populations 1.69924 1.06171 1.27923 1.47966 1.24929 0.94986 0.99722 0.94028 0.86280 0.79818 0.82383 0.78050 1.19502 1.20532 1.20549 1.21095 0.93458 0.89831 1.54569 0.91534 1.19543 0.88651 0.82347 0.97939 1.46126 1.11222 1.02445 1.70268 1.17769 0.91527 0.85960 0.85942 1.20654 0.95713 0.94966 1.15187 1.16956 0.77242 0.91687 0.94209 1.91628 1.29801 1.94829 1.92279 1.20622 0.94723 0.80204 1.30070 1.43221 1.00637 1.02758 0.97028 1.94472 1.53174 1.36833 1.55239 1.94561 0.98900 1.90873 1.54650 1.20220 0.91822 0.97498 0.90132 1.20060 0.97414 0.91324 1.15103 1.20954 0.84720 0.86393 1.02640 1.86560 1.68493 1.31659 1.49815 0.92034 0.94741 0.94742 0.76119 0.82025 0.82436 0.91814 0.87847 0.77331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.01 13.29 55.43 0.74 -22.28 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 18.91 29.54 -169.99 -5.02 13.89 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.55 -12.89 9.28 -34.44 -0.32 -13.21 16 8 H 0.07 1.48 7.60 -52.49 -0.40 1.08 16 9 C 0.24 4.93 4.67 -5.20 -0.02 4.91 16 10 N -0.68 -11.07 5.66 -59.82 -0.34 -11.40 16 11 C 0.31 4.56 6.63 -83.80 -0.56 4.01 16 12 C -0.24 -3.79 9.29 -39.32 -0.37 -4.15 16 13 C 0.22 3.55 7.25 -39.45 -0.29 3.26 16 14 F -0.11 -1.82 15.47 2.25 0.03 -1.78 16 15 C -0.17 -2.60 6.86 -79.84 -0.55 -3.15 16 16 N 0.05 0.90 4.45 34.01 0.15 1.05 16 17 O -0.19 -3.16 18.44 -29.46 -0.54 -3.70 16 18 O -0.18 -3.29 17.41 -29.46 -0.51 -3.80 16 19 C 0.02 0.31 8.72 -39.62 -0.35 -0.04 16 20 C -0.23 -2.92 5.89 -104.42 -0.62 -3.54 16 21 C 0.13 1.35 6.19 36.00 0.22 1.58 16 22 O -0.56 -5.67 12.69 -35.23 -0.45 -6.12 16 23 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 24 H 0.03 0.78 7.94 -51.93 -0.41 0.37 16 25 H 0.03 0.78 7.96 -51.93 -0.41 0.37 16 26 H 0.40 5.76 7.01 -40.82 -0.29 5.47 16 27 H 0.16 2.64 6.73 -52.49 -0.35 2.29 16 28 H 0.16 1.74 6.13 -52.49 -0.32 1.42 16 29 H 0.06 0.58 8.05 -51.92 -0.42 0.17 16 30 H 0.10 1.06 8.07 -51.93 -0.42 0.64 16 31 H 0.38 2.50 8.12 45.56 0.37 2.87 16 LS Contribution 284.41 15.07 4.29 4.29 Total: -1.00 -27.22 284.41 -6.37 -33.60 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -1.79 Total: 5.00 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -2.93 Total: -8.75 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.55 Total: -32.63 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -1.50 Total: -13.62 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.03 Total: -1.78 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.22 -6.37 -33.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865732393.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.998 kcal (2) G-P(sol) polarization free energy of solvation -27.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds