Wall clock time and date at job start Mon Mar 30 2020 01:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00194 * 2 1 4 4 H 1.48507 * 109.47565 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47056 * 299.99791 * 3 2 1 6 6 H 1.48498 * 109.47421 * 59.99772 * 3 2 1 7 7 C 1.37887 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99870 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99806 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47028 * 179.97438 * 9 7 2 11 11 C 1.39673 * 120.00373 * 179.97438 * 10 9 7 12 12 C 1.38892 * 120.05893 * 0.25282 * 11 10 9 13 13 C 1.38298 * 119.90186 * 180.27484 * 12 11 10 14 14 F 1.35096 * 119.98981 * 179.74417 * 13 12 11 15 15 C 1.38547 * 120.02268 * 359.76618 * 13 12 11 16 16 N 1.48000 * 119.93731 * 179.97438 * 15 13 12 17 17 O 1.21799 * 119.99667 * 179.97438 * 16 15 13 18 18 O 1.21799 * 120.00155 * 359.97438 * 16 15 13 19 19 C 1.38232 * 120.12071 * 359.95822 * 15 13 12 20 20 C 1.38137 * 120.09966 * 0.02562 * 19 15 13 21 21 C 1.50696 * 120.01215 * 180.02562 * 20 19 15 22 22 O 1.42903 * 109.47131 * 359.97438 * 21 20 19 23 23 H 0.96998 * 119.99964 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47245 * 59.99526 * 9 7 2 25 25 H 1.09001 * 109.47009 * 299.99229 * 9 7 2 26 26 H 0.97006 * 120.00080 * 359.97438 * 10 9 7 27 27 H 1.07999 * 120.04486 * 0.04638 * 12 11 10 28 28 H 1.07994 * 119.94688 * 180.02562 * 19 15 13 29 29 H 1.09008 * 109.47144 * 239.99966 * 21 20 19 30 30 H 1.08999 * 109.47358 * 119.99555 * 21 20 19 31 31 H 0.96700 * 114.00311 * 300.00591 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7375 -4.9296 0.0011 12 6 0.3722 -5.1849 -0.0037 13 6 -0.0852 -6.4900 0.0026 14 9 -1.4127 -6.7403 0.0032 15 6 0.8177 -7.5409 0.0088 16 7 0.3261 -8.9369 0.0161 17 8 1.1188 -9.8616 0.0210 18 8 -0.8711 -9.1610 0.0172 19 6 2.1766 -7.2880 0.0078 20 6 2.6390 -5.9863 0.0011 21 6 4.1209 -5.7128 -0.0005 22 8 4.8339 -6.9513 0.0061 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5568 0.8904 26 1 3.1567 -3.4355 0.0002 27 1 -0.3311 -4.3653 -0.0086 28 1 2.8779 -8.1092 0.0121 29 1 4.3852 -5.1371 0.8866 30 1 4.3849 -5.1461 -0.8934 31 1 4.6474 -7.5084 0.7742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865732393.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:27 Heat of formation + Delta-G solvation = -100.377386 kcal Electronic energy + Delta-G solvation = -20153.940732 eV Core-core repulsion = 16545.020478 eV Total energy + Delta-G solvation = -3608.920253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.39197 -43.12152 -41.12209 -37.82538 -37.55386 -37.03802 -34.83748 -32.51920 -31.96506 -29.16538 -27.54172 -26.48233 -25.11006 -23.02492 -22.86061 -20.29166 -19.89871 -19.59465 -18.65844 -18.29071 -18.10641 -17.79688 -16.98201 -16.73476 -16.58113 -16.04441 -15.58028 -15.37714 -15.10555 -14.65465 -14.32281 -14.02354 -13.73544 -13.24258 -12.85660 -12.80590 -12.65988 -12.47410 -12.25822 -12.25341 -12.13067 -11.70937 -11.51182 -11.34335 -10.72109 -10.17876 -8.87984 -8.36269 -6.50027 -1.12992 -0.23984 0.33876 0.41584 1.41351 1.44104 1.54604 2.09723 2.13654 2.38439 2.69078 3.02005 3.18572 3.32538 3.45614 3.82514 4.02094 4.20374 4.41827 4.46168 4.56326 4.56517 4.80872 4.94887 5.07582 5.14396 5.36729 5.48548 5.75960 5.96650 6.48750 6.58288 6.75146 6.76076 7.22975 8.74881 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024607 B = 0.004720 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.626523 B = 5930.740076 C = 7045.976652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.972 3.028 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.252 3.748 10 N -0.682 5.682 11 C 0.306 3.694 12 C -0.247 4.247 13 C 0.210 3.790 14 F -0.118 7.118 15 C -0.170 4.170 16 N 0.051 4.949 17 O -0.162 6.162 18 O -0.225 6.225 19 C 0.033 3.967 20 C -0.208 4.208 21 C 0.134 3.866 22 O -0.568 6.568 23 H 0.269 0.731 24 H 0.011 0.989 25 H 0.012 0.988 26 H 0.415 0.585 27 H 0.148 0.852 28 H 0.186 0.814 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.226 -9.180 1.353 12.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.797 3.203 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.595 4.595 8 H 0.098 0.902 9 C 0.129 3.871 10 N -0.301 5.301 11 C 0.188 3.812 12 C -0.272 4.272 13 C 0.187 3.813 14 F -0.096 7.096 15 C -0.259 4.259 16 N 0.560 4.440 17 O -0.379 6.379 18 O -0.425 6.425 19 C 0.012 3.988 20 C -0.214 4.214 21 C 0.056 3.944 22 O -0.375 6.375 23 H 0.078 0.922 24 H 0.029 0.971 25 H 0.030 0.970 26 H 0.253 0.747 27 H 0.165 0.835 28 H 0.203 0.797 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 8.268 -7.946 0.800 11.495 hybrid contribution -0.872 0.495 0.461 1.103 sum 7.396 -7.451 1.261 10.574 Atomic orbital electron populations 1.70047 1.07795 1.28598 1.49769 1.25805 0.95643 1.03226 0.93934 0.85284 0.79228 0.78299 0.77533 1.17995 1.20823 1.20770 1.21545 0.94326 0.90601 1.53024 0.90155 1.19021 0.88816 0.83407 0.95816 1.45651 1.10961 1.01803 1.71658 1.17858 0.91431 0.85978 0.85977 1.20594 0.96320 0.94544 1.15746 1.17063 0.77043 0.92025 0.95130 1.91598 1.30632 1.94893 1.92489 1.20828 0.95624 0.79129 1.30312 1.43410 1.00489 1.03319 0.96815 1.94435 1.52845 1.37274 1.53388 1.94581 0.99457 1.91222 1.57236 1.20519 0.90883 0.98437 0.88923 1.20315 0.98578 0.90145 1.12361 1.21037 0.82513 0.86993 1.03867 1.86551 1.68172 1.31709 1.51096 0.92172 0.97126 0.96989 0.74657 0.83475 0.79686 0.89859 0.87272 0.75445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.07 13.29 21.45 0.28 -48.78 16 2 C 0.01 0.72 5.46 84.66 0.46 1.18 16 3 Si 0.97 38.25 29.54 68.60 2.03 40.28 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.56 -25.69 9.28 25.60 0.24 -25.45 16 8 H 0.08 3.40 7.60 -2.91 -0.02 3.38 16 9 C 0.25 10.66 4.67 85.63 0.40 11.06 16 10 N -0.68 -21.20 5.66 -343.17 -1.94 -23.14 16 11 C 0.31 8.65 6.63 38.21 0.25 8.90 16 12 C -0.25 -7.88 9.29 22.44 0.21 -7.67 16 13 C 0.21 6.76 7.25 22.36 0.16 6.92 16 14 F -0.12 -4.14 15.47 44.97 0.70 -3.45 16 15 C -0.17 -5.05 6.86 36.45 0.25 -4.80 16 16 N 0.05 1.70 4.45 -46.30 -0.21 1.49 16 17 O -0.16 -5.06 18.44 18.89 0.35 -4.71 16 18 O -0.23 -8.38 17.41 18.89 0.33 -8.06 16 19 C 0.03 0.74 8.72 22.24 0.19 0.94 16 20 C -0.21 -4.59 5.89 -19.73 -0.12 -4.71 16 21 C 0.13 2.22 6.19 71.23 0.44 2.66 16 22 O -0.57 -8.95 12.69 -148.98 -1.89 -10.84 16 23 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 24 H 0.01 0.51 7.94 -2.39 -0.02 0.49 16 25 H 0.01 0.57 7.96 -2.39 -0.02 0.55 16 26 H 0.42 10.84 7.01 -92.70 -0.65 10.19 16 27 H 0.15 5.11 6.73 -2.91 -0.02 5.09 16 28 H 0.19 3.25 6.13 -2.91 -0.02 3.24 16 29 H 0.08 1.14 8.05 -2.38 -0.02 1.12 16 30 H 0.11 1.78 8.07 -2.39 -0.02 1.76 16 31 H 0.40 3.34 8.12 -74.06 -0.60 2.74 16 Total: -1.00 -58.44 284.41 2.10 -56.34 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -0.04 Total: 11.83 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 2.49 Total: -10.96 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -1.86 Total: -70.43 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -1.21 Total: -23.61 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.70 Total: -3.45 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -58.44 2.10 -56.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865732393.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.040 kcal (2) G-P(sol) polarization free energy of solvation -58.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds