Wall clock time and date at job start Mon Mar 30 2020 01:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76198 * 102.99972 * 2 1 4 4 C 1.35098 * 125.51905 * 179.97438 * 3 2 1 5 5 C 1.47101 * 105.88121 * 179.97438 * 4 3 2 6 6 C 1.47228 * 127.15753 * 180.02562 * 5 4 3 7 7 O 1.21538 * 120.00403 * 359.72541 * 6 5 4 8 8 O 1.34784 * 119.99933 * 179.97438 * 6 5 4 9 9 C 1.45199 * 117.00054 * 179.72386 * 8 6 5 10 10 C 1.53003 * 109.46980 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46725 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.46730 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00041 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99770 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99976 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99873 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47103 * 90.00087 * 16 14 12 18 18 H 1.48496 * 109.47265 * 210.00041 * 16 14 12 19 19 H 1.48503 * 109.47467 * 330.00634 * 16 14 12 20 20 C 1.36420 * 105.68473 * 0.26120 * 5 4 3 21 21 O 1.33921 * 108.55271 * 359.57385 * 20 5 4 22 22 H 1.09009 * 109.47241 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47521 * 299.99739 * 1 2 3 24 24 H 1.09003 * 109.47300 * 60.00033 * 1 2 3 25 25 H 1.08004 * 127.06298 * 359.97438 * 4 3 2 26 26 H 1.08997 * 109.46967 * 299.99918 * 9 8 6 27 27 H 1.09002 * 109.46640 * 60.00121 * 9 8 6 28 28 H 1.09002 * 109.47255 * 300.00304 * 10 9 8 29 29 H 1.08999 * 109.46752 * 60.00539 * 10 9 8 30 30 H 1.08997 * 109.46920 * 299.99829 * 11 10 9 31 31 H 1.08991 * 109.47398 * 60.00345 * 11 10 9 32 32 H 0.96998 * 119.99385 * 180.02562 * 15 14 12 33 33 H 1.07995 * 125.72172 * 179.72259 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.4583 2.2342 0.0005 5 6 3.2883 3.6954 -0.0004 6 6 4.3510 4.7143 -0.0008 7 8 5.5181 4.3753 0.0047 8 8 4.0296 6.0233 -0.0021 9 6 5.1287 6.9720 0.0038 10 6 4.5723 8.3973 0.0007 11 6 5.7306 9.3969 0.0063 12 6 5.1825 10.8007 0.0038 13 1 4.1149 10.9636 -0.0016 14 6 6.0441 11.8772 0.0085 15 7 7.3442 11.6788 0.0147 16 14 5.3647 13.6172 0.0048 17 1 5.1770 14.0784 1.4039 18 1 6.3180 14.5193 -0.6900 19 1 4.0590 13.6374 -0.7023 20 6 1.9410 3.9099 0.0047 21 8 1.3206 2.7231 -0.0011 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 4.3897 1.6874 0.0013 26 1 5.7349 6.8202 0.8969 27 1 5.7440 6.8206 -0.8831 28 1 3.9663 8.5488 -0.8926 29 1 3.9568 8.5489 0.8874 30 1 6.3368 9.2455 0.8994 31 1 6.3458 9.2451 -0.8805 32 1 7.9502 12.4361 0.0184 33 1 1.4562 4.8749 0.0098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869773172.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:03 Heat of formation + Delta-G solvation = -84.979780 kcal Electronic energy + Delta-G solvation = -17125.704866 eV Core-core repulsion = 14051.372728 eV Total energy + Delta-G solvation = -3074.332138 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.81622 -39.92310 -36.39330 -34.01573 -33.26320 -31.71504 -30.40734 -29.45741 -27.17983 -24.60692 -22.88501 -22.13406 -20.70419 -20.34372 -18.86346 -17.09312 -16.77598 -16.47007 -16.26002 -16.10048 -15.69646 -14.73169 -14.48322 -14.10580 -13.97724 -13.88149 -13.27915 -13.02642 -12.54837 -12.20284 -12.17021 -11.85566 -11.25092 -10.98255 -10.70898 -10.65838 -10.48302 -10.46740 -10.40066 -9.89868 -9.72556 -9.53217 -9.17644 -8.39601 -7.84798 -6.04296 -4.07462 0.72939 0.96443 1.42882 1.52233 2.69166 3.05284 3.20255 3.30382 3.36673 3.39990 4.37798 4.43795 4.54976 4.58446 4.63553 5.09510 5.17576 5.19598 5.31667 5.51155 5.57097 5.61813 5.85026 6.00665 6.40886 6.45614 6.52211 6.81193 6.96252 7.59341 7.70284 7.91231 7.94160 8.34719 8.98767 9.56827 11.07148 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.057633 B = 0.002597 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.713132 B =10779.894037 C =11234.549852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.019 6.019 3 C -0.038 4.038 4 C -0.122 4.122 5 C -0.208 4.208 6 C 0.532 3.468 7 O -0.505 6.505 8 O -0.356 6.356 9 C 0.070 3.930 10 C -0.108 4.108 11 C 0.023 3.977 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.059 3.941 21 O -0.171 6.171 22 H 0.112 0.888 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.167 0.833 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.262 0.738 33 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.679 -22.954 -0.021 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.217 5.783 3 C -0.197 4.197 4 C -0.150 4.150 5 C -0.212 4.212 6 C 0.376 3.624 7 O -0.394 6.394 8 O -0.273 6.273 9 C -0.003 4.003 10 C -0.146 4.146 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.076 0.924 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.015 4.015 21 O -0.068 6.068 22 H 0.131 0.869 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.185 0.815 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -13.829 -23.989 -0.026 27.690 hybrid contribution -0.706 2.192 0.008 2.303 sum -14.534 -21.797 -0.018 26.199 Atomic orbital electron populations 1.23646 0.94246 1.07410 1.06784 1.85858 1.06815 0.92039 1.93540 1.24026 0.90307 0.92797 1.12551 1.22442 0.97025 0.90921 1.04597 1.20579 0.92488 0.92554 1.15598 1.19884 0.87177 0.82158 0.73196 1.90850 1.20367 1.82411 1.45799 1.86526 1.41744 1.15492 1.83574 1.23553 0.86889 0.87436 1.02396 1.21775 1.01302 0.89572 1.01963 1.19057 0.92211 0.92345 0.97757 1.21163 0.93035 0.90729 1.51055 0.92435 1.25037 0.94853 0.99421 0.95206 1.69967 1.01756 1.31108 1.50481 0.86540 0.78790 0.84217 0.78134 1.20614 1.21189 1.19829 1.24863 0.91474 0.88014 0.97144 1.83980 1.36835 1.13911 1.72083 0.86933 0.89185 0.89179 0.81500 0.91315 0.91320 0.92106 0.92108 0.96184 0.96169 0.92873 0.75610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 10.45 101.05 1.06 0.34 16 2 S -0.02 -0.15 22.74 -107.50 -2.44 -2.60 16 3 C -0.04 -0.40 7.32 29.62 0.22 -0.18 16 4 C -0.12 -1.46 10.97 -37.10 -0.41 -1.87 16 5 C -0.21 -2.73 6.31 -103.31 -0.65 -3.38 16 6 C 0.53 8.69 7.95 34.38 0.27 8.96 16 7 O -0.50 -9.66 16.77 -19.30 -0.32 -9.99 16 8 O -0.36 -5.95 10.07 -40.72 -0.41 -6.36 16 9 C 0.07 1.30 5.48 37.16 0.20 1.50 16 10 C -0.11 -2.22 5.53 -26.73 -0.15 -2.37 16 11 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 12 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 16 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.06 0.59 11.93 30.08 0.36 0.95 16 21 O -0.17 -1.72 10.19 6.67 0.07 -1.65 16 22 H 0.11 0.30 8.14 -51.92 -0.42 -0.12 16 23 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.17 1.87 8.06 -52.48 -0.42 1.45 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.23 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 314.83 15.07 4.74 4.74 Total: -1.00 -32.43 314.83 -6.49 -38.92 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -4.19 Total: -4.45 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 0.35 Total: -9.02 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.67 Total: -17.99 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -2.44 Total: -2.60 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.43 -6.49 -38.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869773172.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.059 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds