Wall clock time and date at job start Mon Mar 30 2020 01:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76198 * 102.99972 * 2 1 4 4 C 1.35098 * 125.51905 * 179.97438 * 3 2 1 5 5 C 1.47101 * 105.88121 * 179.97438 * 4 3 2 6 6 C 1.47228 * 127.15753 * 180.02562 * 5 4 3 7 7 O 1.21538 * 120.00403 * 359.72541 * 6 5 4 8 8 O 1.34784 * 119.99933 * 179.97438 * 6 5 4 9 9 C 1.45199 * 117.00054 * 179.72386 * 8 6 5 10 10 C 1.53003 * 109.46980 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46725 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.46730 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00041 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99770 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99976 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99873 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47103 * 90.00087 * 16 14 12 18 18 H 1.48496 * 109.47265 * 210.00041 * 16 14 12 19 19 H 1.48503 * 109.47467 * 330.00634 * 16 14 12 20 20 C 1.36420 * 105.68473 * 0.26120 * 5 4 3 21 21 O 1.33921 * 108.55271 * 359.57385 * 20 5 4 22 22 H 1.09009 * 109.47241 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47521 * 299.99739 * 1 2 3 24 24 H 1.09003 * 109.47300 * 60.00033 * 1 2 3 25 25 H 1.08004 * 127.06298 * 359.97438 * 4 3 2 26 26 H 1.08997 * 109.46967 * 299.99918 * 9 8 6 27 27 H 1.09002 * 109.46640 * 60.00121 * 9 8 6 28 28 H 1.09002 * 109.47255 * 300.00304 * 10 9 8 29 29 H 1.08999 * 109.46752 * 60.00539 * 10 9 8 30 30 H 1.08997 * 109.46920 * 299.99829 * 11 10 9 31 31 H 1.08991 * 109.47398 * 60.00345 * 11 10 9 32 32 H 0.96998 * 119.99385 * 180.02562 * 15 14 12 33 33 H 1.07995 * 125.72172 * 179.72259 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.4583 2.2342 0.0005 5 6 3.2883 3.6954 -0.0004 6 6 4.3510 4.7143 -0.0008 7 8 5.5181 4.3753 0.0047 8 8 4.0296 6.0233 -0.0021 9 6 5.1287 6.9720 0.0038 10 6 4.5723 8.3973 0.0007 11 6 5.7306 9.3969 0.0063 12 6 5.1825 10.8007 0.0038 13 1 4.1149 10.9636 -0.0016 14 6 6.0441 11.8772 0.0085 15 7 7.3442 11.6788 0.0147 16 14 5.3647 13.6172 0.0048 17 1 5.1770 14.0784 1.4039 18 1 6.3180 14.5193 -0.6900 19 1 4.0590 13.6374 -0.7023 20 6 1.9410 3.9099 0.0047 21 8 1.3206 2.7231 -0.0011 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 4.3897 1.6874 0.0013 26 1 5.7349 6.8202 0.8969 27 1 5.7440 6.8206 -0.8831 28 1 3.9663 8.5488 -0.8926 29 1 3.9568 8.5489 0.8874 30 1 6.3368 9.2455 0.8994 31 1 6.3458 9.2451 -0.8805 32 1 7.9502 12.4361 0.0184 33 1 1.4562 4.8749 0.0098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869773172.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:03 Heat of formation + Delta-G solvation = -103.560141 kcal Electronic energy + Delta-G solvation = -17126.510571 eV Core-core repulsion = 14051.372728 eV Total energy + Delta-G solvation = -3075.137843 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.66864 -41.27426 -37.82571 -35.93709 -34.25677 -33.61077 -31.29993 -29.86393 -29.01156 -26.04096 -24.52033 -22.96709 -22.17379 -21.73909 -19.89903 -18.68839 -18.08406 -17.84023 -17.29816 -17.15391 -16.83723 -16.48900 -15.61635 -15.46221 -14.73704 -14.45544 -14.38806 -14.11935 -14.02194 -13.88166 -13.70452 -13.17357 -12.83094 -12.51443 -12.40255 -12.10103 -11.95382 -11.77992 -11.48754 -11.43812 -11.31511 -11.24402 -10.75744 -10.56855 -8.51028 -8.21265 -6.32798 0.00615 0.03512 0.60665 0.91186 1.41682 1.43764 1.48165 1.55429 1.89403 2.35303 2.42496 3.12802 3.37450 3.80656 3.99780 4.01175 4.05339 4.24852 4.25767 4.29857 4.40973 4.72270 4.80251 4.84911 4.87294 4.97827 5.07933 5.33512 5.50068 5.55799 5.64378 5.80778 6.19151 6.60468 6.83481 7.36771 8.91028 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.057633 B = 0.002597 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.713132 B =10779.894037 C =11234.549852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.026 6.026 3 C -0.033 4.033 4 C -0.146 4.146 5 C -0.244 4.244 6 C 0.534 3.466 7 O -0.543 6.543 8 O -0.348 6.348 9 C 0.079 3.921 10 C -0.092 4.092 11 C 0.024 3.976 12 C -0.541 4.541 13 H 0.067 0.933 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.970 3.030 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.260 1.260 20 C 0.091 3.909 21 O -0.164 6.164 22 H 0.137 0.863 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.164 0.836 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.070 0.930 30 H -0.004 1.004 31 H -0.004 1.004 32 H 0.264 0.736 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.665 -23.177 -0.021 29.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.210 5.790 3 C -0.191 4.191 4 C -0.174 4.174 5 C -0.248 4.248 6 C 0.381 3.619 7 O -0.434 6.434 8 O -0.265 6.265 9 C 0.005 3.995 10 C -0.129 4.129 11 C -0.013 4.013 12 C -0.579 4.579 13 H 0.085 0.915 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.794 3.206 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.184 1.184 20 C 0.017 3.983 21 O -0.060 6.060 22 H 0.155 0.845 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.181 0.819 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -16.849 -24.237 -0.025 29.518 hybrid contribution 0.152 2.129 0.008 2.134 sum -16.697 -22.108 -0.016 27.705 Atomic orbital electron populations 1.23800 0.91259 1.09148 1.07284 1.85981 1.10051 0.89852 1.93071 1.24347 0.89832 0.93979 1.10975 1.22497 0.97857 0.90722 1.06316 1.20462 0.92922 0.92205 1.19172 1.20387 0.87588 0.82057 0.71874 1.90830 1.22079 1.82662 1.47862 1.86497 1.40501 1.15727 1.83745 1.23206 0.87127 0.87154 1.01969 1.21459 0.99288 0.89319 1.02870 1.18949 0.93439 0.93462 0.95460 1.21624 0.93660 0.91904 1.50727 0.91462 1.26035 0.95084 1.04316 0.94665 1.70107 1.03272 1.32572 1.51525 0.85374 0.78433 0.78280 0.78517 1.19742 1.20962 1.18424 1.25426 0.90354 0.89011 0.93516 1.84028 1.36543 1.13872 1.71557 0.84525 0.88657 0.88655 0.81865 0.91857 0.91877 0.91120 0.91089 0.98545 0.98533 0.92718 0.72323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.45 113.37 1.18 0.24 16 2 S -0.03 -0.36 22.74 -56.49 -1.28 -1.65 16 3 C -0.03 -0.64 7.32 67.10 0.49 -0.15 16 4 C -0.15 -3.47 10.97 23.87 0.26 -3.21 16 5 C -0.24 -6.22 6.31 -19.01 -0.12 -6.34 16 6 C 0.53 17.51 7.95 70.18 0.56 18.07 16 7 O -0.54 -21.43 16.77 19.71 0.33 -21.10 16 8 O -0.35 -11.36 10.07 -56.96 -0.57 -11.94 16 9 C 0.08 2.94 5.48 71.98 0.39 3.33 16 10 C -0.09 -3.72 5.53 30.59 0.17 -3.55 16 11 C 0.02 1.26 4.97 29.85 0.15 1.41 16 12 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 13 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 14 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 15 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 16 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 20 C 0.09 1.61 11.93 67.40 0.80 2.42 16 21 O -0.16 -2.87 10.19 0.95 0.01 -2.86 16 22 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 23 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.16 3.84 8.06 -2.91 -0.02 3.81 16 26 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.26 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -70.62 314.83 6.49 -64.14 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 1.11 Total: 1.94 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 4.59 Total: -17.63 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.28 Total: -56.69 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.23 Total: -35.90 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -1.28 Total: -1.65 kcal Total: -70.62 6.49 -64.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869773172.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.424 kcal (2) G-P(sol) polarization free energy of solvation -70.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds