Wall clock time and date at job start Mon Mar 30 2020 01:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35691 * 117.00091 * 2 1 4 4 C 1.38488 * 120.10716 * 359.97438 * 3 2 1 5 5 C 1.38286 * 120.26390 * 179.97438 * 4 3 2 6 6 C 1.38405 * 120.48084 * 0.02562 * 5 4 3 7 7 F 1.35095 * 119.89739 * 179.97438 * 6 5 4 8 8 C 1.38671 * 120.20218 * 359.97438 * 6 5 4 9 9 O 1.35705 * 120.13329 * 180.02562 * 8 6 5 10 10 C 1.42907 * 117.00252 * 89.99573 * 9 8 6 11 11 C 1.40330 * 119.73082 * 359.78246 * 8 6 5 12 12 C 1.47057 * 120.22994 * 180.23654 * 11 8 6 13 13 O 1.21576 * 119.99507 * 270.23007 * 12 11 8 14 14 O 1.34809 * 120.00215 * 90.23173 * 12 11 8 15 15 C 1.34869 * 117.00358 * 179.97438 * 14 12 11 16 16 H 1.08008 * 119.99711 * 0.02562 * 15 14 12 17 17 C 1.38770 * 120.00435 * 179.97438 * 15 14 12 18 18 N 1.31435 * 120.00297 * 180.02562 * 17 15 14 19 19 Si 1.86808 * 119.99847 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.46925 * 89.99964 * 19 17 15 21 21 H 1.48494 * 109.46985 * 209.99558 * 19 17 15 22 22 H 1.48497 * 109.47039 * 330.00083 * 19 17 15 23 23 H 1.09002 * 109.47382 * 300.00423 * 1 2 3 24 24 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46926 * 60.00530 * 1 2 3 26 26 H 1.08003 * 119.86723 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.76189 * 180.02562 * 5 4 3 28 28 H 1.08996 * 109.46743 * 179.97438 * 10 9 8 29 29 H 1.08993 * 109.46892 * 300.00006 * 10 9 8 30 30 H 1.09001 * 109.46761 * 60.00215 * 10 9 8 31 31 H 0.97010 * 119.99992 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2930 2.3719 -0.0005 5 6 1.9175 3.6057 0.0000 6 6 3.2987 3.6935 0.0005 7 9 3.8965 4.9050 0.0005 8 6 4.0709 2.5417 0.0011 9 8 5.4251 2.6294 0.0021 10 6 6.0716 2.6714 1.2759 11 6 3.4463 1.2851 0.0057 12 6 4.2545 0.0566 0.0116 13 8 4.5931 -0.4533 -1.0389 14 8 4.6200 -0.5043 1.1817 15 6 5.3601 -1.6299 1.1165 16 1 5.6337 -2.0414 0.1561 17 6 5.7709 -2.2589 2.2833 18 7 6.4925 -3.3555 2.2198 19 14 5.2982 -1.5468 3.9444 20 1 4.0032 -2.1277 4.3816 21 1 6.3492 -1.8748 4.9408 22 1 5.1661 -0.0720 3.8313 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 0.2145 2.3149 -0.0005 27 1 1.3230 4.5075 0.0000 28 1 7.1501 2.7408 1.1338 29 1 5.7214 3.5405 1.8326 30 1 5.8365 1.7643 1.8327 31 1 6.7794 -3.7954 3.0355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869815307.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:32 Heat of formation + Delta-G solvation = -183.751665 kcal Electronic energy + Delta-G solvation = -21077.798761 eV Core-core repulsion = 17432.970376 eV Total energy + Delta-G solvation = -3644.828385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.94987 -41.96028 -40.66436 -39.95239 -37.65865 -37.36378 -34.57206 -32.52898 -30.78561 -28.35617 -28.28703 -27.61845 -25.27615 -23.25047 -22.22962 -20.25749 -19.87034 -19.13024 -18.75890 -17.98924 -17.73283 -17.22947 -16.81799 -16.64221 -16.33821 -16.07908 -16.02414 -15.82293 -15.49148 -14.62745 -14.30853 -14.24774 -13.92604 -13.53590 -13.36563 -13.27498 -12.77307 -12.50731 -12.44166 -12.30762 -11.93390 -11.87361 -11.55064 -11.17965 -10.88777 -10.20911 -9.32717 -8.60460 -6.47354 -0.40062 -0.12677 1.11386 1.26724 1.40848 1.48353 1.90970 2.05201 2.20270 2.25779 2.62349 2.83382 3.13989 3.60800 3.79485 3.94578 4.03492 4.21101 4.31794 4.33140 4.36708 4.43542 4.62157 4.71880 4.74373 4.86432 4.91997 5.27813 5.38323 5.81118 6.11401 6.21145 6.36977 6.73485 7.44620 8.52590 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.007865 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.222045 B = 3559.343502 C = 4320.063070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.341 6.341 3 C 0.164 3.836 4 C -0.166 4.166 5 C -0.055 4.055 6 C 0.036 3.964 7 F -0.130 7.130 8 C 0.117 3.883 9 O -0.351 6.351 10 C 0.029 3.971 11 C -0.161 4.161 12 C 0.478 3.522 13 O -0.565 6.565 14 O -0.245 6.245 15 C -0.410 4.410 16 H 0.055 0.945 17 C 0.022 3.978 18 N -0.911 5.911 19 Si 0.978 3.022 20 H -0.257 1.257 21 H -0.257 1.257 22 H -0.253 1.253 23 H 0.088 0.912 24 H 0.110 0.890 25 H 0.086 0.914 26 H 0.201 0.799 27 H 0.202 0.798 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.280 16.737 2.201 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.254 6.254 3 C 0.117 3.883 4 C -0.184 4.184 5 C -0.073 4.073 6 C 0.016 3.984 7 F -0.108 7.108 8 C 0.072 3.928 9 O -0.268 6.268 10 C -0.064 4.064 11 C -0.164 4.164 12 C 0.325 3.675 13 O -0.460 6.460 14 O -0.153 6.153 15 C -0.485 4.485 16 H 0.072 0.928 17 C -0.178 4.178 18 N -0.550 5.550 19 Si 0.796 3.204 20 H -0.181 1.181 21 H -0.181 1.181 22 H -0.177 1.177 23 H 0.107 0.893 24 H 0.129 0.871 25 H 0.105 0.895 26 H 0.218 0.782 27 H 0.219 0.781 28 H 0.136 0.864 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.841 16.261 1.899 22.098 hybrid contribution 0.648 -0.532 0.190 0.859 sum -14.193 15.730 2.089 21.289 Atomic orbital electron populations 1.23636 0.74393 1.06225 1.04039 1.86179 1.25421 1.26497 1.87287 1.18976 0.88761 0.86990 0.93595 1.21520 1.02643 0.88538 1.05655 1.21480 0.90337 1.00717 0.94758 1.17716 0.91938 0.78679 1.10030 1.91491 1.84349 1.40546 1.94435 1.18533 0.84074 0.89930 1.00269 1.85954 1.15187 1.93760 1.31887 1.23337 0.99091 1.01435 0.82565 1.18696 0.92211 0.90566 1.14878 1.20839 0.79704 0.84833 0.82096 1.90668 1.56254 1.64702 1.34405 1.83651 1.60702 1.38200 1.32789 1.20329 1.31482 1.00768 0.95968 0.92754 1.25530 0.94345 0.94933 1.03014 1.69693 1.34925 1.18370 1.31997 0.85184 0.79331 0.79985 0.75856 1.18106 1.18084 1.17683 0.89339 0.87130 0.89515 0.78229 0.78147 0.86443 0.90361 0.94649 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -11.39 9.95 -90.10 -0.90 -12.29 16 3 C 0.16 5.33 6.70 22.84 0.15 5.48 16 4 C -0.17 -3.16 9.02 22.34 0.20 -2.96 16 5 C -0.05 -0.98 10.00 22.32 0.22 -0.76 16 6 C 0.04 1.00 7.29 22.41 0.16 1.17 16 7 F -0.13 -3.49 17.10 44.97 0.77 -2.72 16 8 C 0.12 4.43 5.74 22.88 0.13 4.56 16 9 O -0.35 -14.33 9.73 -90.25 -0.88 -15.21 16 10 C 0.03 0.98 11.13 113.37 1.26 2.24 16 11 C -0.16 -6.86 5.77 -19.95 -0.12 -6.97 16 12 C 0.48 26.65 6.39 70.14 0.45 27.10 16 13 O -0.56 -35.92 16.36 19.59 0.32 -35.60 16 14 O -0.24 -14.36 8.31 10.40 0.09 -14.27 16 15 C -0.41 -26.71 10.11 67.95 0.69 -26.02 16 16 H 0.05 4.04 7.09 -2.91 -0.02 4.02 16 17 C 0.02 1.34 5.49 84.88 0.47 1.81 16 18 N -0.91 -56.11 13.96 21.63 0.30 -55.81 16 19 Si 0.98 44.54 28.62 68.60 1.96 46.50 16 20 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 22 H -0.25 -11.13 7.11 99.48 0.71 -10.42 16 23 H 0.09 0.99 7.66 -2.39 -0.02 0.97 16 24 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.09 0.99 7.66 -2.38 -0.02 0.97 16 26 H 0.20 1.69 6.28 -2.91 -0.02 1.67 16 27 H 0.20 1.54 8.06 -2.91 -0.02 1.52 16 28 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.03 1.39 7.87 -2.39 -0.02 1.37 16 31 H 0.29 16.05 8.31 -92.70 -0.77 15.28 16 Total: -1.00 -87.72 290.16 7.57 -80.14 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: 1.17 Total: 2.33 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 4.73 Total: 6.93 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.30 Total: -55.81 kcal Atomic # 8 Polarization: -76.00 SS G_CDS: -1.37 Total: -77.37 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.77 Total: -2.72 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.96 Total: 46.50 kcal Total: -87.72 7.57 -80.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869815307.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.610 kcal (2) G-P(sol) polarization free energy of solvation -87.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds