Wall clock time and date at job start Mon Mar 30 2020 01:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47391 * 2 1 4 4 C 1.42899 * 114.00310 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47565 * 179.97438 * 4 3 2 6 6 O 1.42906 * 109.46843 * 64.99822 * 5 4 3 7 7 C 1.34999 * 116.99980 * 179.97438 * 6 5 4 8 8 O 1.21692 * 119.99847 * 0.02562 * 7 6 5 9 9 C 1.41750 * 120.00042 * 180.02562 * 7 6 5 10 10 S 1.75840 * 125.45637 * 0.14712 * 9 7 6 11 11 C 1.75653 * 91.48947 * 180.18207 * 10 9 7 12 12 C 1.32878 * 110.86994 * 359.82251 * 11 10 9 13 13 C 1.39681 * 115.27320 * 359.97438 * 12 11 10 14 14 C 1.40502 * 123.35724 * 179.97438 * 13 12 11 15 15 H 1.07993 * 119.99979 * 205.06790 * 14 13 12 16 16 C 1.40342 * 119.99903 * 25.07471 * 14 13 12 17 17 N 1.30620 * 119.99628 * 198.73356 * 16 14 13 18 18 Si 1.86793 * 120.00208 * 18.73409 * 16 14 13 19 19 H 1.48505 * 109.47086 * 263.29959 * 18 16 14 20 20 H 1.48498 * 109.47230 * 23.30135 * 18 16 14 21 21 H 1.48500 * 109.47264 * 143.30224 * 18 16 14 22 22 H 1.09003 * 109.47007 * 60.00141 * 1 2 3 23 23 H 1.08994 * 109.47279 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47289 * 300.00464 * 1 2 3 25 25 H 1.08999 * 109.47289 * 239.99536 * 2 1 3 26 26 H 1.09003 * 109.47007 * 119.99859 * 2 1 3 27 27 H 1.08998 * 109.46796 * 59.99644 * 4 3 2 28 28 H 1.09002 * 109.47043 * 300.00089 * 4 3 2 29 29 H 1.09003 * 109.46828 * 305.00579 * 5 4 3 30 30 H 1.08989 * 109.47322 * 185.00121 * 5 4 3 31 31 H 1.08001 * 124.56296 * 179.84399 * 11 10 9 32 32 H 1.07995 * 122.35838 * 180.02562 * 12 11 10 33 33 H 0.97000 * 120.00429 * 353.01887 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 -0.0001 6 8 3.3976 3.5461 1.2204 7 6 3.6709 4.8584 1.3804 8 8 4.2566 5.4689 0.5056 9 6 3.2757 5.5251 2.5672 10 16 2.4292 4.7853 3.9192 11 6 2.4033 6.3075 4.7953 12 6 2.9972 7.2674 4.0942 13 6 3.4994 6.8745 2.8514 14 6 4.1575 7.7506 1.9720 15 1 4.1671 7.5452 0.9119 16 6 4.8025 8.8926 2.4714 17 7 5.0911 9.8827 1.6698 18 14 5.2484 8.9967 4.2824 19 1 4.1959 9.7516 5.0087 20 1 5.3532 7.6268 4.8459 21 1 6.5507 9.6945 4.4322 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8340 0.9763 -0.8891 28 1 3.8333 0.9766 0.8908 29 1 3.3500 3.4408 -0.8424 30 1 4.9083 3.0253 -0.0893 31 1 1.9642 6.4447 5.7725 32 1 3.0861 8.2797 4.4599 33 1 4.9528 9.7893 0.7143 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870043536.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:13 Heat of formation + Delta-G solvation = -120.953551 kcal Electronic energy + Delta-G solvation = -18135.024968 eV Core-core repulsion = 15059.132890 eV Total energy + Delta-G solvation = -3075.892078 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.26004 -37.90418 -36.93934 -35.00585 -33.52911 -31.81073 -29.64247 -28.91716 -26.76485 -22.94912 -22.80348 -21.89339 -20.88917 -19.25552 -17.85870 -16.94167 -16.76735 -16.09151 -15.39463 -15.13317 -14.90400 -14.59791 -13.70761 -13.60846 -13.36917 -13.15985 -12.75889 -12.25701 -12.05355 -11.86539 -11.64509 -11.55921 -11.32066 -11.21114 -10.94024 -10.81911 -10.21843 -10.02481 -9.72593 -9.63563 -9.56490 -9.37299 -8.82740 -7.89910 -7.63338 -7.37206 -4.76614 1.70464 2.87797 2.93087 3.14411 3.29829 3.47208 3.51014 3.70531 3.75307 3.87196 4.19765 4.98146 5.00452 5.04429 5.27143 5.30868 5.34353 5.45039 5.55857 5.77091 5.82788 5.85311 5.97673 6.08067 6.19988 6.75483 6.81560 7.16345 7.17168 7.25631 7.33142 7.68994 7.96339 8.30320 8.48123 9.30686 9.59852 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028375 B = 0.005073 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.533811 B = 5517.970531 C = 6205.450953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.379 6.379 4 C 0.068 3.932 5 C 0.075 3.925 6 O -0.362 6.362 7 C 0.532 3.468 8 O -0.550 6.550 9 C -0.414 4.414 10 S 0.019 5.981 11 C -0.175 4.175 12 C -0.169 4.169 13 C 0.111 3.889 14 C -0.412 4.412 15 H 0.111 0.889 16 C 0.034 3.966 17 N -0.770 5.770 18 Si 1.066 2.934 19 H -0.270 1.270 20 H -0.255 1.255 21 H -0.280 1.280 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.126 0.874 33 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 -11.617 1.424 12.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.298 6.298 4 C -0.009 4.009 5 C -0.001 4.001 6 O -0.281 6.281 7 C 0.388 3.612 8 O -0.447 6.447 9 C -0.530 4.530 10 S 0.278 5.722 11 C -0.310 4.310 12 C -0.203 4.203 13 C 0.101 3.899 14 C -0.442 4.442 15 H 0.129 0.871 16 C -0.192 4.192 17 N -0.391 5.391 18 Si 0.890 3.110 19 H -0.196 1.196 20 H -0.179 1.179 21 H -0.206 1.206 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.165 0.835 32 H 0.143 0.857 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.352 -11.723 2.483 12.443 hybrid contribution 0.045 0.237 -1.800 1.816 sum -3.307 -11.487 0.683 11.973 Atomic orbital electron populations 1.21731 0.93865 1.01860 1.03395 1.22434 0.95695 0.84241 0.99676 1.88022 1.20715 1.25781 1.95316 1.22565 0.81972 0.95790 1.00576 1.22297 0.99176 0.91135 0.87468 1.86234 1.75907 1.26851 1.39101 1.18215 0.77807 0.78586 0.86558 1.90726 1.43842 1.66231 1.43910 1.20857 1.34239 0.96257 1.01612 1.83336 1.64603 1.11406 1.12878 1.25291 1.05408 0.97408 1.02885 1.20290 1.03790 0.99530 0.96653 1.16891 0.92111 0.90095 0.90796 1.21220 1.22093 1.02566 0.98304 0.87078 1.27790 0.92255 0.90133 1.08993 1.70397 1.31813 1.28726 1.08122 0.83749 0.77329 0.78481 0.71424 1.19644 1.17889 1.20618 0.91948 0.91380 0.91577 0.93810 0.93486 0.91906 0.92428 0.91711 0.90932 0.83453 0.85690 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16 2 C 0.06 0.65 6.66 37.16 0.25 0.90 16 3 O -0.38 -6.07 10.31 -40.08 -0.41 -6.48 16 4 C 0.07 0.98 6.32 37.16 0.23 1.21 16 5 C 0.07 1.37 5.76 37.16 0.21 1.59 16 6 O -0.36 -8.29 9.84 -44.43 -0.44 -8.73 16 7 C 0.53 13.96 7.73 32.07 0.25 14.20 16 8 O -0.55 -15.53 14.10 -19.41 -0.27 -15.80 16 9 C -0.41 -10.75 6.36 -37.70 -0.24 -10.99 16 10 S 0.02 0.42 23.02 -107.50 -2.47 -2.05 16 11 C -0.17 -3.52 11.11 28.88 0.32 -3.20 16 12 C -0.17 -3.81 7.31 -40.89 -0.30 -4.11 16 13 C 0.11 2.90 5.15 -107.96 -0.56 2.35 16 14 C -0.41 -11.21 8.79 -37.94 -0.33 -11.54 16 15 H 0.11 3.33 6.22 -52.49 -0.33 3.00 16 16 C 0.03 0.84 5.47 -17.28 -0.09 0.75 16 17 N -0.77 -19.52 13.64 55.57 0.76 -18.76 16 18 Si 1.07 22.15 24.94 -169.99 -4.24 17.92 16 19 H -0.27 -5.11 6.78 56.52 0.38 -4.73 16 20 H -0.25 -5.30 6.67 56.52 0.38 -4.93 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 30 H 0.07 1.26 8.13 -51.94 -0.42 0.84 16 31 H 0.15 2.35 8.06 -52.49 -0.42 1.92 16 32 H 0.13 2.61 4.62 -52.49 -0.24 2.36 16 33 H 0.30 7.43 8.73 -40.82 -0.36 7.07 16 LS Contribution 298.19 15.07 4.49 4.49 Total: -1.00 -30.48 298.19 -6.45 -36.93 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.99 Total: 2.52 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 0.13 Total: -10.03 kcal Atomic # 7 Polarization: -19.52 SS G_CDS: 0.76 Total: -18.76 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.12 Total: -31.01 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.24 Total: 17.92 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.47 Total: -2.05 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.48 -6.45 -36.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043536.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.021 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds