Wall clock time and date at job start Mon Mar 30 2020 01:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47391 * 2 1 4 4 C 1.42899 * 114.00310 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47565 * 179.97438 * 4 3 2 6 6 O 1.42906 * 109.46843 * 64.99822 * 5 4 3 7 7 C 1.34999 * 116.99980 * 179.97438 * 6 5 4 8 8 O 1.21692 * 119.99847 * 0.02562 * 7 6 5 9 9 C 1.41750 * 120.00042 * 180.02562 * 7 6 5 10 10 S 1.75840 * 125.45637 * 0.14712 * 9 7 6 11 11 C 1.75653 * 91.48947 * 180.18207 * 10 9 7 12 12 C 1.32878 * 110.86994 * 359.82251 * 11 10 9 13 13 C 1.39681 * 115.27320 * 359.97438 * 12 11 10 14 14 C 1.40502 * 123.35724 * 179.97438 * 13 12 11 15 15 H 1.07993 * 119.99979 * 205.06790 * 14 13 12 16 16 C 1.40342 * 119.99903 * 25.07471 * 14 13 12 17 17 N 1.30620 * 119.99628 * 198.73356 * 16 14 13 18 18 Si 1.86793 * 120.00208 * 18.73409 * 16 14 13 19 19 H 1.48505 * 109.47086 * 263.29959 * 18 16 14 20 20 H 1.48498 * 109.47230 * 23.30135 * 18 16 14 21 21 H 1.48500 * 109.47264 * 143.30224 * 18 16 14 22 22 H 1.09003 * 109.47007 * 60.00141 * 1 2 3 23 23 H 1.08994 * 109.47279 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47289 * 300.00464 * 1 2 3 25 25 H 1.08999 * 109.47289 * 239.99536 * 2 1 3 26 26 H 1.09003 * 109.47007 * 119.99859 * 2 1 3 27 27 H 1.08998 * 109.46796 * 59.99644 * 4 3 2 28 28 H 1.09002 * 109.47043 * 300.00089 * 4 3 2 29 29 H 1.09003 * 109.46828 * 305.00579 * 5 4 3 30 30 H 1.08989 * 109.47322 * 185.00121 * 5 4 3 31 31 H 1.08001 * 124.56296 * 179.84399 * 11 10 9 32 32 H 1.07995 * 122.35838 * 180.02562 * 12 11 10 33 33 H 0.97000 * 120.00429 * 353.01887 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 -0.0001 6 8 3.3976 3.5461 1.2204 7 6 3.6709 4.8584 1.3804 8 8 4.2566 5.4689 0.5056 9 6 3.2757 5.5251 2.5672 10 16 2.4292 4.7853 3.9192 11 6 2.4033 6.3075 4.7953 12 6 2.9972 7.2674 4.0942 13 6 3.4994 6.8745 2.8514 14 6 4.1575 7.7506 1.9720 15 1 4.1671 7.5452 0.9119 16 6 4.8025 8.8926 2.4714 17 7 5.0911 9.8827 1.6698 18 14 5.2484 8.9967 4.2824 19 1 4.1959 9.7516 5.0087 20 1 5.3532 7.6268 4.8459 21 1 6.5507 9.6945 4.4322 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8340 0.9763 -0.8891 28 1 3.8333 0.9766 0.8908 29 1 3.3500 3.4408 -0.8424 30 1 4.9083 3.0253 -0.0893 31 1 1.9642 6.4447 5.7725 32 1 3.0861 8.2797 4.4599 33 1 4.9528 9.7893 0.7143 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870043536.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:12 Heat of formation + Delta-G solvation = -140.786546 kcal Electronic energy + Delta-G solvation = -18135.884991 eV Core-core repulsion = 15059.132890 eV Total energy + Delta-G solvation = -3076.752101 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.13616 -39.19837 -38.64646 -36.91883 -35.41140 -32.89321 -31.27294 -30.41258 -28.63901 -24.58903 -23.68789 -23.52364 -22.62895 -21.15890 -19.68764 -18.74324 -18.07732 -17.53613 -16.84418 -16.74643 -16.65415 -16.07187 -15.43186 -15.16267 -14.90503 -14.54077 -14.16681 -13.77017 -13.57016 -13.53429 -13.19904 -13.02817 -12.73600 -12.54276 -12.25616 -12.07026 -12.01911 -11.74948 -11.49387 -11.41537 -11.10674 -10.86381 -10.59256 -9.82574 -9.49317 -9.22668 -6.76982 -0.12045 1.17712 1.27447 1.47938 1.56417 1.65343 1.80116 2.06429 2.16817 2.25026 2.66159 3.04572 3.88519 4.03364 4.16253 4.24326 4.26357 4.30961 4.39939 4.49161 4.52708 4.58831 4.85374 4.95564 5.02508 5.07829 5.17830 5.25528 5.33966 5.43536 5.71490 6.02048 6.23160 6.24707 6.53650 7.31618 7.62767 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028375 B = 0.005073 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.533811 B = 5517.970531 C = 6205.450953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.416 6.416 4 C 0.076 3.924 5 C 0.063 3.937 6 O -0.363 6.363 7 C 0.522 3.478 8 O -0.586 6.586 9 C -0.456 4.456 10 S 0.056 5.944 11 C -0.139 4.139 12 C -0.201 4.201 13 C 0.106 3.894 14 C -0.452 4.452 15 H 0.064 0.936 16 C 0.008 3.992 17 N -0.787 5.787 18 Si 1.099 2.901 19 H -0.229 1.229 20 H -0.254 1.254 21 H -0.272 1.272 22 H 0.055 0.945 23 H 0.097 0.903 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.205 0.795 32 H 0.147 0.853 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -13.174 4.197 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.336 6.336 4 C 0.000 4.000 5 C -0.012 4.012 6 O -0.282 6.282 7 C 0.380 3.620 8 O -0.485 6.485 9 C -0.571 4.571 10 S 0.314 5.686 11 C -0.274 4.274 12 C -0.233 4.233 13 C 0.095 3.905 14 C -0.482 4.482 15 H 0.082 0.918 16 C -0.212 4.212 17 N -0.407 5.407 18 Si 0.915 3.085 19 H -0.153 1.153 20 H -0.178 1.178 21 H -0.198 1.198 22 H 0.074 0.926 23 H 0.116 0.884 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.221 0.779 32 H 0.164 0.836 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.312 -13.306 5.228 14.932 hybrid contribution 0.255 0.489 -2.744 2.799 sum -4.058 -12.817 2.484 13.671 Atomic orbital electron populations 1.21778 0.93241 1.03473 1.02319 1.22716 0.96291 0.82472 1.01283 1.87972 1.21286 1.28706 1.95667 1.22572 0.81932 0.92561 1.02932 1.22705 0.99639 0.93520 0.85302 1.86204 1.75682 1.25155 1.41114 1.18564 0.77298 0.79577 0.86557 1.90702 1.45356 1.67262 1.45225 1.21428 1.35062 0.97379 1.03264 1.83107 1.62988 1.11881 1.10579 1.25916 1.02163 0.95335 1.04011 1.20341 1.05731 1.01405 0.95843 1.17283 0.91014 0.89883 0.92283 1.21077 1.25509 1.05070 0.96566 0.91823 1.29095 0.90820 0.88861 1.12441 1.70472 1.33266 1.29284 1.07686 0.83433 0.78735 0.79105 0.67240 1.15338 1.17841 1.19759 0.92595 0.88415 0.93077 0.91522 0.92419 0.88040 0.91322 0.93193 0.90310 0.77850 0.83620 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 10.28 71.98 0.74 -2.13 16 2 C 0.05 1.01 6.66 71.98 0.48 1.49 16 3 O -0.42 -12.86 10.31 -144.34 -1.49 -14.35 16 4 C 0.08 2.09 6.32 71.98 0.45 2.55 16 5 C 0.06 2.36 5.76 71.98 0.41 2.78 16 6 O -0.36 -16.97 9.84 -56.19 -0.55 -17.52 16 7 C 0.52 28.47 7.73 68.69 0.53 29.00 16 8 O -0.59 -35.25 14.10 19.21 0.27 -34.98 16 9 C -0.46 -23.94 6.36 23.49 0.15 -23.79 16 10 S 0.06 2.30 23.02 -56.49 -1.30 1.00 16 11 C -0.14 -4.98 11.11 66.64 0.74 -4.24 16 12 C -0.20 -8.54 7.31 21.44 0.16 -8.38 16 13 C 0.11 5.59 5.15 -22.03 -0.11 5.47 16 14 C -0.45 -25.83 8.79 23.33 0.21 -25.63 16 15 H 0.06 4.15 6.22 -2.91 -0.02 4.14 16 16 C 0.01 0.40 5.47 85.39 0.47 0.87 16 17 N -0.79 -41.38 13.64 21.89 0.30 -41.08 16 18 Si 1.10 42.99 24.94 68.60 1.71 44.70 16 19 H -0.23 -7.52 6.78 99.48 0.67 -6.84 16 20 H -0.25 -9.88 6.67 99.48 0.66 -9.21 16 21 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 22 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 27 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.99 8.13 -2.39 -0.02 1.97 16 30 H 0.08 2.80 8.13 -2.39 -0.02 2.78 16 31 H 0.20 5.00 8.06 -2.91 -0.02 4.97 16 32 H 0.15 5.55 4.62 -2.91 -0.01 5.53 16 33 H 0.29 15.29 8.73 -92.71 -0.81 14.48 16 Total: -1.00 -70.82 298.19 4.17 -66.65 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.01 Total: 17.59 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 4.22 Total: -22.01 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.30 Total: -41.08 kcal Atomic # 8 Polarization: -65.08 SS G_CDS: -1.77 Total: -66.85 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.71 Total: 44.70 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.30 Total: 1.00 kcal Total: -70.82 4.17 -66.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043536.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.139 kcal (2) G-P(sol) polarization free energy of solvation -70.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds