Wall clock time and date at job start Mon Mar 30 2020 01:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99892 * 2 1 4 4 H 1.08997 * 109.47127 * 30.00315 * 3 2 1 5 5 C 1.52997 * 109.47240 * 270.00105 * 3 2 1 6 6 C 1.52997 * 109.47210 * 150.00040 * 3 2 1 7 7 O 1.42904 * 109.47186 * 64.99922 * 6 3 2 8 8 C 1.35001 * 116.99638 * 180.02562 * 7 6 3 9 9 O 1.21689 * 120.00521 * 359.97438 * 8 7 6 10 10 C 1.41762 * 119.99574 * 180.02562 * 8 7 6 11 11 S 1.75832 * 125.45657 * 0.02562 * 10 8 7 12 12 C 1.75645 * 91.49135 * 179.97438 * 11 10 8 13 13 C 1.32875 * 110.87119 * 359.97438 * 12 11 10 14 14 C 1.39681 * 115.27009 * 0.02562 * 13 12 11 15 15 C 1.40506 * 123.35647 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00115 * 205.28559 * 15 14 13 17 17 C 1.40344 * 120.00411 * 25.28237 * 15 14 13 18 18 N 1.30616 * 119.99532 * 10.07025 * 17 15 14 19 19 Si 1.86797 * 119.99998 * 190.07003 * 17 15 14 20 20 H 1.48501 * 109.47406 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47084 * 120.00121 * 19 17 15 22 22 H 1.48504 * 109.47151 * 239.99923 * 19 17 15 23 23 H 1.08995 * 109.47208 * 299.99884 * 1 2 3 24 24 H 1.08998 * 109.47385 * 59.99924 * 1 2 3 25 25 H 1.09003 * 109.47189 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47216 * 59.99496 * 5 3 2 27 27 H 1.08996 * 109.47431 * 180.02562 * 5 3 2 28 28 H 1.09005 * 109.47113 * 299.99840 * 5 3 2 29 29 H 1.09001 * 109.46975 * 305.00171 * 6 3 2 30 30 H 1.09001 * 109.47773 * 185.00144 * 6 3 2 31 31 H 1.08005 * 124.56623 * 179.73369 * 12 11 10 32 32 H 1.07994 * 122.36906 * 179.97438 * 13 12 11 33 33 H 0.97008 * 119.99494 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3588 1.2633 0.7212 7 8 4.2683 0.4446 -0.0168 8 6 5.5122 0.3016 0.4881 9 8 5.8150 0.8582 1.5270 10 6 6.4660 -0.4962 -0.1927 11 16 6.1850 -1.3598 -1.6983 12 6 7.8281 -1.9806 -1.7023 13 6 8.4998 -1.5489 -0.6402 14 6 7.7799 -0.7214 0.2247 15 6 8.3235 -0.1698 1.3971 16 1 7.6751 0.1033 2.2165 17 6 9.7091 0.0263 1.5035 18 7 10.4714 -0.1160 0.4524 19 14 10.4631 0.4908 3.1482 20 1 9.3930 0.5896 4.1731 21 1 11.4436 -0.5479 3.5542 22 1 11.1520 1.8005 3.0247 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.2568 1.8014 -1.9563 27 1 2.6613 2.7670 -1.4425 28 1 2.8829 1.0775 -1.9563 29 1 3.2240 0.8476 1.7198 30 1 3.7609 2.2735 0.7995 31 1 8.2362 -2.6293 -2.4633 32 1 9.5293 -1.8194 -0.4580 33 1 11.4292 0.0191 0.5260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870043851.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:44 Heat of formation + Delta-G solvation = -116.516831 kcal Electronic energy + Delta-G solvation = -18378.022953 eV Core-core repulsion = 15302.323265 eV Total energy + Delta-G solvation = -3075.699687 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.26863 -37.95828 -36.66753 -34.90377 -33.21671 -31.80591 -29.16132 -27.30754 -26.66089 -25.71198 -22.75808 -21.22595 -20.24922 -18.79107 -17.64796 -16.73623 -16.11796 -15.60147 -15.44069 -15.18784 -14.78881 -14.74021 -13.86125 -13.33695 -12.97330 -12.55243 -12.52813 -12.38060 -11.99153 -11.81103 -11.52760 -11.43321 -11.24015 -11.08291 -10.98077 -10.68780 -10.41943 -10.25089 -9.68953 -9.60498 -9.50781 -9.24884 -8.77070 -7.51975 -7.20317 -7.14424 -4.64499 1.95767 2.89473 2.94541 3.04599 3.19336 3.63958 3.75264 3.80773 3.85195 3.97099 4.27753 4.94570 5.15019 5.18955 5.28202 5.35727 5.39904 5.64087 5.81768 5.86610 5.94465 6.03134 6.08894 6.47556 6.71785 6.86615 7.06030 7.19416 7.31531 7.50698 7.57721 7.81929 8.26729 8.46715 8.59176 9.40264 9.74321 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.005522 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.138372 B = 5069.254910 C = 5934.873088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.373 6.373 3 C 0.090 3.910 4 H 0.071 0.929 5 C -0.172 4.172 6 C 0.076 3.924 7 O -0.356 6.356 8 C 0.533 3.467 9 O -0.553 6.553 10 C -0.410 4.410 11 S -0.008 6.008 12 C -0.203 4.203 13 C -0.110 4.110 14 C 0.141 3.859 15 C -0.365 4.365 16 H 0.113 0.887 17 C 0.065 3.935 18 N -0.766 5.766 19 Si 0.927 3.073 20 H -0.252 1.252 21 H -0.268 1.268 22 H -0.269 1.269 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.611 1.300 -1.247 8.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C 0.032 3.968 4 H 0.089 0.911 5 C -0.229 4.229 6 C 0.000 4.000 7 O -0.275 6.275 8 C 0.390 3.610 9 O -0.450 6.450 10 C -0.526 4.526 11 S 0.248 5.752 12 C -0.337 4.337 13 C -0.142 4.142 14 C 0.130 3.870 15 C -0.395 4.395 16 H 0.131 0.869 17 C -0.158 4.158 18 N -0.390 5.390 19 Si 0.750 3.250 20 H -0.175 1.175 21 H -0.193 1.193 22 H -0.193 1.193 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.446 1.157 -2.018 9.728 hybrid contribution 1.381 0.684 1.478 2.135 sum -8.065 1.841 -0.539 8.290 Atomic orbital electron populations 1.22772 0.81949 1.02567 0.99455 1.88096 1.18742 1.27317 1.94989 1.22260 0.93034 0.84920 0.96582 0.91104 1.22192 1.02046 1.02109 0.96559 1.22380 0.87312 0.95220 0.95080 1.86247 1.23275 1.65464 1.52504 1.18291 0.79492 0.79938 0.83324 1.90706 1.78995 1.50176 1.25102 1.21023 1.00109 1.25451 1.06061 1.83261 1.11620 1.53858 1.26421 1.25279 0.98407 1.06932 1.03107 1.20574 1.00972 0.98179 0.94484 1.16929 0.88682 0.89415 0.91936 1.20231 0.91554 1.27416 1.00337 0.86905 1.26447 0.97414 0.92709 0.99257 1.69681 1.07417 1.31346 1.30566 0.85916 0.79399 0.78932 0.80778 1.17489 1.19276 1.19345 0.94391 0.94332 0.89801 0.92951 0.91768 0.90290 0.91948 0.91216 0.84263 0.83887 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.82 101.05 1.09 1.42 16 2 O -0.37 -6.00 10.31 -40.08 -0.41 -6.41 16 3 C 0.09 1.33 3.13 -26.73 -0.08 1.25 16 4 H 0.07 0.83 7.79 -51.93 -0.40 0.42 16 5 C -0.17 -2.39 9.33 37.16 0.35 -2.05 16 6 C 0.08 1.40 5.25 37.16 0.20 1.60 16 7 O -0.36 -8.18 8.96 -44.44 -0.40 -8.58 16 8 C 0.53 14.04 7.73 32.08 0.25 14.29 16 9 O -0.55 -15.40 14.10 -19.41 -0.27 -15.67 16 10 C -0.41 -10.95 6.36 -37.69 -0.24 -11.19 16 11 S -0.01 -0.19 23.02 -107.50 -2.47 -2.66 16 12 C -0.20 -4.49 11.11 28.88 0.32 -4.17 16 13 C -0.11 -2.69 8.81 -40.89 -0.36 -3.05 16 14 C 0.14 3.82 5.53 -107.96 -0.60 3.22 16 15 C -0.36 -9.77 8.41 -37.94 -0.32 -10.09 16 16 H 0.11 3.16 6.06 -52.49 -0.32 2.84 16 17 C 0.06 1.55 5.37 -17.28 -0.09 1.45 16 18 N -0.77 -18.16 10.87 55.57 0.60 -17.55 16 19 Si 0.93 18.05 29.57 -169.99 -5.03 13.02 16 20 H -0.25 -5.05 7.11 56.52 0.40 -4.65 16 21 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 24 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.61 7.87 -51.93 -0.41 0.20 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.31 7.56 -51.93 -0.39 0.92 16 29 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 30 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 31 H 0.14 2.58 8.06 -52.48 -0.42 2.16 16 32 H 0.14 3.44 6.38 -52.49 -0.33 3.10 16 33 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 LS Contribution 300.50 15.07 4.53 4.53 Total: -1.00 -30.03 300.50 -6.88 -36.90 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.93 Total: 3.74 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 0.51 Total: -7.32 kcal Atomic # 7 Polarization: -18.16 SS G_CDS: 0.60 Total: -17.55 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -1.09 Total: -30.66 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -2.47 Total: -2.66 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.03 -6.88 -36.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043851.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.615 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds