Wall clock time and date at job start Mon Mar 30 2020 01:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00147 * 2 1 4 4 H 1.09007 * 109.47171 * 330.00335 * 3 2 1 5 5 C 1.52998 * 109.46977 * 90.00428 * 3 2 1 6 6 C 1.52998 * 109.47217 * 210.00579 * 3 2 1 7 7 O 1.42906 * 109.47112 * 294.99567 * 6 3 2 8 8 C 1.34997 * 117.00329 * 179.97438 * 7 6 3 9 9 O 1.21698 * 119.99839 * 0.02562 * 8 7 6 10 10 C 1.41752 * 120.00408 * 180.02562 * 8 7 6 11 11 S 1.75832 * 125.45313 * 0.09017 * 10 8 7 12 12 C 1.75648 * 91.48957 * 180.21118 * 11 10 8 13 13 C 1.32871 * 110.86920 * 359.83100 * 12 11 10 14 14 C 1.39677 * 115.27613 * 0.02562 * 13 12 11 15 15 C 1.40507 * 123.35993 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99703 * 205.07186 * 15 14 13 17 17 C 1.40332 * 119.99859 * 25.07684 * 15 14 13 18 18 N 1.30621 * 119.99755 * 198.70164 * 17 15 14 19 19 Si 1.86801 * 120.00391 * 18.70565 * 17 15 14 20 20 H 1.48499 * 109.46712 * 263.29417 * 19 17 15 21 21 H 1.48503 * 109.47023 * 23.28898 * 19 17 15 22 22 H 1.48502 * 109.47405 * 143.29113 * 19 17 15 23 23 H 1.08996 * 109.47554 * 59.99567 * 1 2 3 24 24 H 1.09002 * 109.47079 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46932 * 299.99345 * 1 2 3 26 26 H 1.08996 * 109.47706 * 60.00067 * 5 3 2 27 27 H 1.08999 * 109.46926 * 180.02562 * 5 3 2 28 28 H 1.09003 * 109.47139 * 299.99766 * 5 3 2 29 29 H 1.08999 * 109.46997 * 174.99967 * 6 3 2 30 30 H 1.08991 * 109.47565 * 54.99897 * 6 3 2 31 31 H 1.08001 * 124.56607 * 179.83754 * 12 11 10 32 32 H 1.07995 * 122.36149 * 180.02562 * 13 12 11 33 33 H 0.97002 * 120.00217 * 353.01409 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2178 1.7712 1.4425 6 6 3.3588 1.2632 -0.7214 7 8 4.2684 0.4445 0.0166 8 6 5.5122 0.3014 -0.4882 9 8 5.8149 0.8580 -1.5273 10 6 6.4657 -0.4972 0.1918 11 16 6.1834 -1.3642 1.6953 12 6 7.8286 -1.9795 1.7027 13 6 8.5005 -1.5471 0.6410 14 6 7.7796 -0.7225 -0.2257 15 6 8.3232 -0.1707 -1.3980 16 1 7.9109 0.7394 -1.8080 17 6 9.4017 -0.8024 -2.0361 18 7 10.1389 -0.1372 -2.8848 19 14 9.7830 -2.5945 -1.6720 20 1 10.8511 -2.6741 -0.6435 21 1 8.5594 -3.2684 -1.1681 22 1 10.2415 -3.2655 -2.9149 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 2.8830 1.0774 1.9563 27 1 2.6607 2.7672 1.4425 28 1 1.2569 1.8013 1.9564 29 1 3.7608 2.2734 -0.7996 30 1 3.2240 0.8476 -1.7198 31 1 8.2389 -2.6226 2.4672 32 1 9.5312 -1.8145 0.4610 33 1 9.8826 0.7597 -3.1510 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870043852.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:45 Heat of formation + Delta-G solvation = -117.615139 kcal Electronic energy + Delta-G solvation = -18452.725690 eV Core-core repulsion = 15376.978376 eV Total energy + Delta-G solvation = -3075.747313 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.35047 -38.03355 -36.90698 -34.98968 -33.52120 -31.86651 -29.30572 -27.41086 -26.72920 -25.78340 -22.39802 -21.43615 -20.53825 -19.24604 -17.89988 -16.94268 -16.45807 -15.62808 -15.46916 -15.04827 -14.92991 -14.78324 -13.80554 -13.49767 -13.32700 -12.98933 -12.59400 -12.46652 -12.08710 -11.93144 -11.64192 -11.44335 -11.36446 -11.14287 -10.90624 -10.71964 -10.20729 -10.01579 -9.69454 -9.63383 -9.54396 -9.36474 -8.82092 -7.89149 -7.62578 -7.36196 -4.75739 1.71144 2.88540 2.93881 3.15653 3.31054 3.48044 3.51735 3.76390 3.80098 3.88991 4.20855 4.89476 5.01142 5.11151 5.23154 5.31459 5.35640 5.60671 5.75338 5.77575 5.80992 5.89036 5.98073 6.19866 6.41174 6.75490 6.82205 7.16847 7.17372 7.26684 7.34880 7.70383 7.97134 8.30933 8.48703 9.31950 9.60729 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.005590 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.133004 B = 5007.929685 C = 5558.083810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.373 6.373 3 C 0.090 3.910 4 H 0.072 0.928 5 C -0.171 4.171 6 C 0.076 3.924 7 O -0.357 6.357 8 C 0.531 3.469 9 O -0.551 6.551 10 C -0.413 4.413 11 S 0.021 5.979 12 C -0.175 4.175 13 C -0.169 4.169 14 C 0.111 3.889 15 C -0.412 4.412 16 H 0.111 0.889 17 C 0.034 3.966 18 N -0.770 5.770 19 Si 1.066 2.934 20 H -0.270 1.270 21 H -0.255 1.255 22 H -0.280 1.280 23 H 0.038 0.962 24 H 0.084 0.916 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.148 0.852 32 H 0.126 0.874 33 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.928 -0.322 5.736 11.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C 0.032 3.968 4 H 0.090 0.910 5 C -0.229 4.229 6 C 0.000 4.000 7 O -0.276 6.276 8 C 0.388 3.612 9 O -0.448 6.448 10 C -0.529 4.529 11 S 0.279 5.721 12 C -0.310 4.310 13 C -0.203 4.203 14 C 0.101 3.899 15 C -0.442 4.442 16 H 0.129 0.871 17 C -0.191 4.191 18 N -0.391 5.391 19 Si 0.890 3.110 20 H -0.197 1.197 21 H -0.179 1.179 22 H -0.206 1.206 23 H 0.056 0.944 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.165 0.835 32 H 0.143 0.857 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.909 -1.571 6.028 11.705 hybrid contribution -0.089 1.931 -0.770 2.080 sum -9.998 0.360 5.259 11.302 Atomic orbital electron populations 1.22778 0.81879 1.02611 0.99483 1.88093 1.18806 1.27273 1.94990 1.22257 0.93001 0.84982 0.96556 0.91044 1.22191 1.02079 1.02044 0.96563 1.22386 0.87286 0.95132 0.95157 1.86226 1.23350 1.65652 1.52338 1.18227 0.79466 0.80172 0.83349 1.90727 1.79179 1.49981 1.24906 1.20852 0.97299 1.26879 1.07884 1.83338 1.10606 1.51172 1.26949 1.25292 0.98484 1.05036 1.02232 1.20288 1.00468 1.02924 0.96607 1.16894 0.88971 0.90091 0.93947 1.21207 1.09805 1.08277 1.04933 0.87112 1.27779 0.90726 1.07259 0.93365 1.70402 1.30952 1.13980 1.23794 0.83755 0.78269 0.72182 0.76822 1.19665 1.17866 1.20615 0.94353 0.89760 0.94316 0.90354 0.91789 0.92894 0.91260 0.91874 0.83472 0.85711 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.37 -5.91 10.31 -40.08 -0.41 -6.32 16 3 C 0.09 1.31 3.13 -26.73 -0.08 1.22 16 4 H 0.07 0.82 7.79 -51.93 -0.40 0.42 16 5 C -0.17 -2.32 9.33 37.16 0.35 -1.97 16 6 C 0.08 1.40 5.25 37.16 0.20 1.59 16 7 O -0.36 -8.05 8.96 -44.43 -0.40 -8.45 16 8 C 0.53 13.84 7.73 32.07 0.25 14.09 16 9 O -0.55 -15.50 14.10 -19.42 -0.27 -15.77 16 10 C -0.41 -10.68 6.36 -37.70 -0.24 -10.92 16 11 S 0.02 0.45 23.02 -107.50 -2.47 -2.02 16 12 C -0.18 -3.53 11.11 28.88 0.32 -3.21 16 13 C -0.17 -3.82 7.30 -40.89 -0.30 -4.11 16 14 C 0.11 2.90 5.15 -107.96 -0.56 2.34 16 15 C -0.41 -11.20 8.79 -37.94 -0.33 -11.54 16 16 H 0.11 3.30 6.23 -52.48 -0.33 2.98 16 17 C 0.03 0.85 5.47 -17.28 -0.09 0.76 16 18 N -0.77 -19.56 13.64 55.57 0.76 -18.80 16 19 Si 1.07 22.29 24.94 -169.99 -4.24 18.05 16 20 H -0.27 -5.14 6.78 56.52 0.38 -4.75 16 21 H -0.25 -5.36 6.66 56.52 0.38 -4.98 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 23 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 24 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 26 H 0.08 1.25 7.56 -51.93 -0.39 0.86 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.60 7.87 -51.93 -0.41 0.19 16 29 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 30 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 31 H 0.15 2.35 8.06 -52.49 -0.42 1.92 16 32 H 0.13 2.60 4.62 -52.49 -0.24 2.36 16 33 H 0.30 7.42 8.73 -40.82 -0.36 7.06 16 LS Contribution 295.29 15.07 4.45 4.45 Total: -1.00 -30.30 295.29 -5.90 -36.20 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -3.91 Total: 3.00 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 0.60 Total: -10.34 kcal Atomic # 7 Polarization: -19.56 SS G_CDS: 0.76 Total: -18.80 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -1.09 Total: -30.55 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.24 Total: 18.05 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.47 Total: -2.02 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.30 -5.90 -36.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043852.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.414 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds