Wall clock time and date at job start Mon Mar 30 2020 01:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00147 * 2 1 4 4 H 1.09007 * 109.47171 * 330.00335 * 3 2 1 5 5 C 1.52998 * 109.46977 * 90.00428 * 3 2 1 6 6 C 1.52998 * 109.47217 * 210.00579 * 3 2 1 7 7 O 1.42906 * 109.47112 * 294.99567 * 6 3 2 8 8 C 1.34997 * 117.00329 * 179.97438 * 7 6 3 9 9 O 1.21698 * 119.99839 * 0.02562 * 8 7 6 10 10 C 1.41752 * 120.00408 * 180.02562 * 8 7 6 11 11 S 1.75832 * 125.45313 * 0.09017 * 10 8 7 12 12 C 1.75648 * 91.48957 * 180.21118 * 11 10 8 13 13 C 1.32871 * 110.86920 * 359.83100 * 12 11 10 14 14 C 1.39677 * 115.27613 * 0.02562 * 13 12 11 15 15 C 1.40507 * 123.35993 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99703 * 205.07186 * 15 14 13 17 17 C 1.40332 * 119.99859 * 25.07684 * 15 14 13 18 18 N 1.30621 * 119.99755 * 198.70164 * 17 15 14 19 19 Si 1.86801 * 120.00391 * 18.70565 * 17 15 14 20 20 H 1.48499 * 109.46712 * 263.29417 * 19 17 15 21 21 H 1.48503 * 109.47023 * 23.28898 * 19 17 15 22 22 H 1.48502 * 109.47405 * 143.29113 * 19 17 15 23 23 H 1.08996 * 109.47554 * 59.99567 * 1 2 3 24 24 H 1.09002 * 109.47079 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46932 * 299.99345 * 1 2 3 26 26 H 1.08996 * 109.47706 * 60.00067 * 5 3 2 27 27 H 1.08999 * 109.46926 * 180.02562 * 5 3 2 28 28 H 1.09003 * 109.47139 * 299.99766 * 5 3 2 29 29 H 1.08999 * 109.46997 * 174.99967 * 6 3 2 30 30 H 1.08991 * 109.47565 * 54.99897 * 6 3 2 31 31 H 1.08001 * 124.56607 * 179.83754 * 12 11 10 32 32 H 1.07995 * 122.36149 * 180.02562 * 13 12 11 33 33 H 0.97002 * 120.00217 * 353.01409 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2178 1.7712 1.4425 6 6 3.3588 1.2632 -0.7214 7 8 4.2684 0.4445 0.0166 8 6 5.5122 0.3014 -0.4882 9 8 5.8149 0.8580 -1.5273 10 6 6.4657 -0.4972 0.1918 11 16 6.1834 -1.3642 1.6953 12 6 7.8286 -1.9795 1.7027 13 6 8.5005 -1.5471 0.6410 14 6 7.7796 -0.7225 -0.2257 15 6 8.3232 -0.1707 -1.3980 16 1 7.9109 0.7394 -1.8080 17 6 9.4017 -0.8024 -2.0361 18 7 10.1389 -0.1372 -2.8848 19 14 9.7830 -2.5945 -1.6720 20 1 10.8511 -2.6741 -0.6435 21 1 8.5594 -3.2684 -1.1681 22 1 10.2415 -3.2655 -2.9149 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 2.8830 1.0774 1.9563 27 1 2.6607 2.7672 1.4425 28 1 1.2569 1.8013 1.9564 29 1 3.7608 2.2734 -0.7996 30 1 3.2240 0.8476 -1.7198 31 1 8.2389 -2.6226 2.4672 32 1 9.5312 -1.8145 0.4610 33 1 9.8826 0.7597 -3.1510 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870043852.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:45 Heat of formation + Delta-G solvation = -137.511735 kcal Electronic energy + Delta-G solvation = -18453.588471 eV Core-core repulsion = 15376.978376 eV Total energy + Delta-G solvation = -3076.610095 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17097 -39.37621 -38.63013 -36.87384 -35.40458 -33.13740 -31.12117 -29.13889 -27.89221 -27.09475 -24.19288 -23.05805 -21.98585 -21.14689 -19.70623 -18.73878 -17.87233 -17.29752 -16.85162 -16.72482 -16.45833 -16.03357 -15.49051 -15.25356 -14.97271 -14.37804 -14.00965 -13.87894 -13.68049 -13.47818 -13.30031 -12.99117 -12.73583 -12.64517 -12.34665 -12.02270 -11.87041 -11.75215 -11.46220 -11.40399 -11.10481 -10.83478 -10.62365 -9.81837 -9.48465 -9.21597 -6.75855 -0.11303 1.18432 1.27230 1.48084 1.57197 1.65663 1.80003 2.06710 2.18320 2.26378 2.75646 3.05537 3.71570 3.91923 4.07948 4.27746 4.30289 4.45841 4.49593 4.52819 4.58487 4.72673 4.85423 4.87767 4.94847 5.08284 5.18746 5.30012 5.34645 5.44175 5.73485 6.02933 6.24254 6.26045 6.54397 7.33705 7.63622 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.005590 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.133004 B = 5007.929685 C = 5558.083810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.409 6.409 3 C 0.096 3.904 4 H 0.110 0.890 5 C -0.167 4.167 6 C 0.064 3.936 7 O -0.355 6.355 8 C 0.522 3.478 9 O -0.587 6.587 10 C -0.454 4.454 11 S 0.058 5.942 12 C -0.140 4.140 13 C -0.201 4.201 14 C 0.106 3.894 15 C -0.452 4.452 16 H 0.064 0.936 17 C 0.008 3.992 18 N -0.787 5.787 19 Si 1.098 2.902 20 H -0.229 1.229 21 H -0.256 1.256 22 H -0.272 1.272 23 H 0.054 0.946 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.204 0.796 32 H 0.146 0.854 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.670 -2.070 8.176 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.329 6.329 3 C 0.039 3.961 4 H 0.127 0.873 5 C -0.224 4.224 6 C -0.011 4.011 7 O -0.273 6.273 8 C 0.380 3.620 9 O -0.487 6.487 10 C -0.570 4.570 11 S 0.316 5.684 12 C -0.275 4.275 13 C -0.233 4.233 14 C 0.095 3.905 15 C -0.483 4.483 16 H 0.083 0.917 17 C -0.212 4.212 18 N -0.408 5.408 19 Si 0.914 3.086 20 H -0.152 1.152 21 H -0.181 1.181 22 H -0.198 1.198 23 H 0.073 0.927 24 H 0.111 0.889 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.221 0.779 32 H 0.163 0.837 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.676 -3.287 8.487 14.029 hybrid contribution -0.103 2.532 -1.462 2.926 sum -10.779 -0.755 7.025 12.889 Atomic orbital electron populations 1.23025 0.79298 1.03856 1.01170 1.88033 1.21707 1.27944 1.95237 1.22291 0.91083 0.85646 0.97128 0.87277 1.22155 1.03001 1.01609 0.95679 1.22802 0.88728 0.94478 0.95106 1.86203 1.22434 1.66187 1.52499 1.18574 0.80630 0.79834 0.82981 1.90702 1.80098 1.51401 1.26475 1.21418 0.97746 1.27467 1.10364 1.83122 1.11824 1.49817 1.23619 1.25914 0.96874 1.02948 1.01809 1.20337 1.01671 1.04218 0.97107 1.17285 0.89337 0.90157 0.93713 1.21064 1.12014 1.08237 1.06947 0.91749 1.29054 0.89703 1.10202 0.92234 1.70473 1.31633 1.13712 1.24964 0.83438 0.79266 0.67526 0.78339 1.15243 1.18058 1.19806 0.92738 0.88905 0.92449 0.93315 0.90822 0.90074 0.90908 0.93268 0.77911 0.83669 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.82 113.37 1.23 1.66 16 2 O -0.41 -12.44 10.31 -144.35 -1.49 -13.93 16 3 C 0.10 2.66 3.13 30.59 0.10 2.76 16 4 H 0.11 2.21 7.79 -2.38 -0.02 2.19 16 5 C -0.17 -4.22 9.33 71.98 0.67 -3.55 16 6 C 0.06 2.40 5.25 71.98 0.38 2.78 16 7 O -0.36 -16.44 8.96 -56.18 -0.50 -16.94 16 8 C 0.52 28.33 7.73 68.69 0.53 28.86 16 9 O -0.59 -35.25 14.10 19.19 0.27 -34.98 16 10 C -0.45 -23.81 6.36 23.49 0.15 -23.66 16 11 S 0.06 2.37 23.02 -56.49 -1.30 1.07 16 12 C -0.14 -5.04 11.11 66.64 0.74 -4.30 16 13 C -0.20 -8.56 7.30 21.44 0.16 -8.40 16 14 C 0.11 5.57 5.15 -22.03 -0.11 5.46 16 15 C -0.45 -25.84 8.79 23.33 0.21 -25.64 16 16 H 0.06 4.19 6.23 -2.91 -0.02 4.17 16 17 C 0.01 0.42 5.47 85.38 0.47 0.88 16 18 N -0.79 -41.47 13.64 21.89 0.30 -41.17 16 19 Si 1.10 43.43 24.94 68.60 1.71 45.14 16 20 H -0.23 -7.54 6.78 99.48 0.67 -6.87 16 21 H -0.26 -10.16 6.66 99.48 0.66 -9.49 16 22 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 23 H 0.05 0.87 8.08 -2.39 -0.02 0.85 16 24 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.06 0.89 7.87 -2.39 -0.02 0.87 16 26 H 0.05 1.52 7.56 -2.39 -0.02 1.50 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 1.58 7.87 -2.39 -0.02 1.56 16 29 H 0.07 2.63 8.13 -2.39 -0.02 2.61 16 30 H 0.05 1.95 8.13 -2.39 -0.02 1.93 16 31 H 0.20 5.02 8.06 -2.91 -0.02 5.00 16 32 H 0.15 5.55 4.62 -2.91 -0.01 5.54 16 33 H 0.29 15.28 8.73 -92.71 -0.81 14.47 16 Total: -1.00 -70.54 295.29 4.50 -66.04 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 1.01 Total: 17.94 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 4.51 Total: -23.17 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.30 Total: -41.17 kcal Atomic # 8 Polarization: -64.13 SS G_CDS: -1.72 Total: -65.85 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.71 Total: 45.14 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.30 Total: 1.07 kcal Total: -70.54 4.50 -66.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043852.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.475 kcal (2) G-P(sol) polarization free energy of solvation -70.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds