Wall clock time and date at job start Mon Mar 30 2020 01:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46984 * 2 1 4 4 O 1.42892 * 109.46845 * 119.99675 * 2 1 3 5 5 C 1.53000 * 109.47188 * 240.00032 * 2 1 3 6 6 C 1.52991 * 109.46980 * 175.00042 * 5 2 1 7 7 O 1.42904 * 109.47188 * 179.97438 * 6 5 2 8 8 C 1.35001 * 117.00040 * 180.02562 * 7 6 5 9 9 O 1.21682 * 120.00358 * 359.97438 * 8 7 6 10 10 C 1.41755 * 119.99942 * 180.02562 * 8 7 6 11 11 S 1.75839 * 125.45413 * 359.96725 * 10 8 7 12 12 C 1.75651 * 91.48758 * 180.02562 * 11 10 8 13 13 C 1.32871 * 110.86921 * 359.72798 * 12 11 10 14 14 C 1.39679 * 115.27625 * 0.48581 * 13 12 11 15 15 C 1.40505 * 123.35856 * 179.76232 * 14 13 12 16 16 H 1.07997 * 119.99577 * 155.12661 * 15 14 13 17 17 C 1.40335 * 120.00119 * 335.12181 * 15 14 13 18 18 N 1.30616 * 120.00352 * 335.63876 * 17 15 14 19 19 Si 1.86801 * 119.99795 * 155.64160 * 17 15 14 20 20 H 1.48502 * 109.47199 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.46988 * 299.99896 * 19 17 15 22 22 H 1.48503 * 109.47316 * 59.99954 * 19 17 15 23 23 H 1.08998 * 109.46984 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47299 * 300.00265 * 1 2 3 25 25 H 1.09003 * 109.46877 * 60.00195 * 1 2 3 26 26 H 0.96704 * 114.00454 * 60.00201 * 4 2 1 27 27 H 1.08996 * 109.47098 * 54.99353 * 5 2 1 28 28 H 1.09007 * 109.46811 * 294.99745 * 5 2 1 29 29 H 1.09003 * 109.47664 * 60.00052 * 6 5 2 30 30 H 1.08998 * 109.47303 * 299.99744 * 6 5 2 31 31 H 1.08007 * 124.56252 * 179.97438 * 12 11 10 32 32 H 1.08005 * 122.36395 * 180.25241 * 13 12 11 33 33 H 0.97004 * 120.00140 * 356.20442 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0401 -0.7212 -1.2492 6 6 3.5648 -0.6133 -1.3136 7 8 4.0413 -1.2874 -2.4801 8 6 5.3754 -1.2863 -2.6867 9 8 6.1130 -0.7271 -1.8968 10 6 5.9170 -1.9358 -3.8244 11 16 4.9883 -2.7840 -5.0531 12 6 6.4482 -3.1911 -5.9409 13 6 7.5240 -2.7042 -5.3316 14 6 7.2740 -2.0050 -4.1485 15 6 8.2861 -1.4242 -3.3658 16 1 8.0573 -0.5890 -2.7204 17 6 9.5941 -1.9293 -3.4226 18 7 9.8014 -3.1659 -3.7887 19 14 11.0389 -0.8333 -2.9746 20 1 12.3034 -1.5992 -3.1146 21 1 11.0685 0.3421 -3.8818 22 1 10.8933 -0.3715 -1.5707 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7210 -1.5952 1.2330 27 1 1.6054 -0.2618 -2.1369 28 1 1.7517 -1.7716 -1.2055 29 1 3.9995 -1.0728 -0.4259 30 1 3.8532 0.4370 -1.3573 31 1 6.4684 -3.7573 -6.8604 32 1 8.5216 -2.8427 -5.7215 33 1 9.0490 -3.7513 -3.9681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870044056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:30 Heat of formation + Delta-G solvation = -138.989134 kcal Electronic energy + Delta-G solvation = -18071.669967 eV Core-core repulsion = 14994.995807 eV Total energy + Delta-G solvation = -3076.674159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.24013 -37.91183 -37.06012 -35.05840 -33.25871 -32.32540 -29.65512 -28.92722 -26.42350 -23.69688 -22.63256 -21.40784 -20.59457 -19.17811 -17.73803 -16.70957 -16.40520 -16.13399 -15.53988 -15.15622 -14.50332 -14.11682 -14.03729 -13.74479 -13.31474 -13.05854 -12.75702 -12.22062 -12.02260 -11.85984 -11.68121 -11.32233 -11.23383 -11.06552 -10.83996 -10.70676 -10.51886 -10.24109 -10.15681 -9.80366 -9.61368 -9.25167 -8.83330 -7.86501 -7.49573 -7.47472 -4.76155 1.81064 2.95787 2.98247 3.03611 3.25502 3.51550 3.58956 3.78498 3.80744 4.20004 4.32884 4.81883 4.87726 4.95906 5.09097 5.28181 5.42969 5.61634 5.73291 5.82371 5.83586 5.92413 6.17159 6.21408 6.45103 6.81315 6.89946 7.11576 7.24144 7.53657 7.56099 7.71376 7.86394 8.27175 8.50719 9.33963 9.57685 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021525 B = 0.005021 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.526966 B = 5575.559149 C = 6673.851282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.100 0.900 4 O -0.562 6.562 5 C -0.149 4.149 6 C 0.076 3.924 7 O -0.373 6.373 8 C 0.531 3.469 9 O -0.551 6.551 10 C -0.421 4.421 11 S -0.001 6.001 12 C -0.184 4.184 13 C -0.148 4.148 14 C 0.109 3.891 15 C -0.407 4.407 16 H 0.113 0.887 17 C 0.027 3.973 18 N -0.758 5.758 19 Si 1.074 2.926 20 H -0.269 1.269 21 H -0.269 1.269 22 H -0.267 1.267 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.375 0.625 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.143 0.857 32 H 0.129 0.871 33 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.263 1.937 1.642 9.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.045 3.955 3 H 0.118 0.882 4 O -0.368 6.368 5 C -0.187 4.187 6 C 0.001 3.999 7 O -0.293 6.293 8 C 0.388 3.612 9 O -0.448 6.448 10 C -0.537 4.537 11 S 0.256 5.744 12 C -0.319 4.319 13 C -0.181 4.181 14 C 0.099 3.901 15 C -0.437 4.437 16 H 0.131 0.869 17 C -0.199 4.199 18 N -0.380 5.380 19 Si 0.895 3.105 20 H -0.194 1.194 21 H -0.194 1.194 22 H -0.192 1.192 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.222 0.778 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.147 0.853 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.712 2.364 1.850 9.215 hybrid contribution -0.609 -0.409 -0.147 0.748 sum -9.321 1.955 1.702 9.675 Atomic orbital electron populations 1.22478 0.96145 1.02631 1.02745 1.21857 0.92776 0.96893 0.83976 0.88201 1.86605 1.77318 1.29077 1.43798 1.22286 0.95188 1.02145 0.99090 1.22177 0.92957 0.96902 0.87855 1.86154 1.26947 1.71907 1.44288 1.18187 0.78669 0.79237 0.85118 1.90712 1.59198 1.47211 1.47640 1.20805 0.95327 1.31645 1.05900 1.83231 1.09756 1.58932 1.22480 1.25246 0.96969 1.06237 1.03483 1.20427 0.98791 1.01956 0.96947 1.16869 0.91178 0.90389 0.91701 1.21216 0.92619 1.12420 1.17462 0.86880 1.27698 1.02569 0.97395 0.92235 1.70440 1.39372 1.05185 1.23003 0.83492 0.73489 0.75051 0.78436 1.19390 1.19352 1.19201 0.92216 0.91765 0.91430 0.77824 0.90228 0.90812 0.91940 0.92756 0.83878 0.85348 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.54 37.16 0.35 -1.22 16 2 C 0.10 1.18 3.59 -26.73 -0.10 1.08 16 3 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 4 O -0.56 -7.00 12.87 -35.23 -0.45 -7.45 16 5 C -0.15 -2.00 5.26 -26.74 -0.14 -2.14 16 6 C 0.08 1.42 5.27 37.15 0.20 1.61 16 7 O -0.37 -8.51 9.87 -41.32 -0.41 -8.92 16 8 C 0.53 14.04 7.73 32.07 0.25 14.29 16 9 O -0.55 -15.62 14.09 -19.40 -0.27 -15.90 16 10 C -0.42 -11.09 6.36 -37.70 -0.24 -11.33 16 11 S 0.00 -0.02 23.02 -107.50 -2.47 -2.49 16 12 C -0.18 -3.88 11.11 28.88 0.32 -3.56 16 13 C -0.15 -3.46 8.02 -40.89 -0.33 -3.79 16 14 C 0.11 2.87 5.25 -107.96 -0.57 2.31 16 15 C -0.41 -10.85 8.34 -37.94 -0.32 -11.17 16 16 H 0.11 3.19 6.12 -52.49 -0.32 2.86 16 17 C 0.03 0.65 5.12 -17.28 -0.09 0.56 16 18 N -0.76 -18.56 12.53 55.57 0.70 -17.86 16 19 Si 1.07 20.55 30.00 -169.99 -5.10 15.45 16 20 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 21 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.37 3.32 9.05 45.56 0.41 3.74 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.22 7.81 -51.93 -0.41 0.82 16 30 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.14 2.47 8.06 -52.48 -0.42 2.05 16 32 H 0.13 2.91 6.83 -52.48 -0.36 2.56 16 33 H 0.30 7.57 6.49 -40.82 -0.27 7.30 16 LS Contribution 300.63 15.07 4.53 4.53 Total: -1.00 -30.46 300.63 -7.25 -37.71 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -3.11 Total: 8.29 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -0.66 Total: -13.36 kcal Atomic # 7 Polarization: -18.56 SS G_CDS: 0.70 Total: -17.86 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.13 Total: -32.27 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.10 Total: 15.45 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.47 Total: -2.49 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.46 -7.25 -37.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.278 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds