Wall clock time and date at job start Mon Mar 30 2020 01:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46642 * 2 1 4 4 O 1.42895 * 109.47369 * 240.00072 * 2 1 3 5 5 C 1.52994 * 109.47543 * 119.99705 * 2 1 3 6 6 C 1.53000 * 109.47488 * 185.00330 * 5 2 1 7 7 O 1.42900 * 109.47320 * 180.02562 * 6 5 2 8 8 C 1.35007 * 117.00049 * 179.97438 * 7 6 5 9 9 O 1.21686 * 119.99567 * 0.02562 * 8 7 6 10 10 C 1.41752 * 119.99985 * 179.97438 * 8 7 6 11 11 S 1.75830 * 125.45698 * 359.97438 * 10 8 7 12 12 C 1.75652 * 91.49081 * 180.02562 * 11 10 8 13 13 C 1.32866 * 110.86477 * 359.72515 * 12 11 10 14 14 C 1.39673 * 115.28173 * 0.49123 * 13 12 11 15 15 C 1.40499 * 123.36532 * 179.76112 * 14 13 12 16 16 H 1.08006 * 120.00196 * 204.91543 * 15 14 13 17 17 C 1.40338 * 120.00283 * 24.92065 * 15 14 13 18 18 N 1.30620 * 120.00507 * 197.54854 * 17 15 14 19 19 Si 1.86804 * 119.99622 * 17.54650 * 17 15 14 20 20 H 1.48505 * 109.47113 * 263.17482 * 19 17 15 21 21 H 1.48494 * 109.47236 * 23.17509 * 19 17 15 22 22 H 1.48496 * 109.47166 * 143.17761 * 19 17 15 23 23 H 1.08997 * 109.47574 * 299.99381 * 1 2 3 24 24 H 1.08994 * 109.47516 * 60.00353 * 1 2 3 25 25 H 1.09007 * 109.46642 * 180.02562 * 1 2 3 26 26 H 0.96704 * 114.00286 * 299.99725 * 4 2 1 27 27 H 1.09003 * 109.46849 * 65.00249 * 5 2 1 28 28 H 1.09005 * 109.47104 * 305.00527 * 5 2 1 29 29 H 1.08994 * 109.47265 * 59.99882 * 6 5 2 30 30 H 1.09005 * 109.47109 * 300.00194 * 6 5 2 31 31 H 1.07999 * 124.56229 * 180.02562 * 12 11 10 32 32 H 1.08001 * 122.36131 * 180.25381 * 13 12 11 33 33 H 0.97000 * 119.99917 * 353.08091 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0401 -0.7211 1.2492 6 6 3.5649 -0.6131 1.3137 7 8 4.0413 -1.2872 2.4801 8 6 5.3755 -1.2860 2.6867 9 8 6.1129 -0.7267 1.8968 10 6 5.9171 -1.9354 3.8244 11 16 4.9883 -2.7824 5.0540 12 6 6.4483 -3.1889 5.9420 13 6 7.5249 -2.7127 5.3261 14 6 7.2742 -2.0044 4.1487 15 6 8.2862 -1.4244 3.3654 16 1 8.0596 -0.5833 2.7269 17 6 9.5913 -1.9380 3.4126 18 7 10.5915 -1.2213 2.9744 19 14 9.8982 -3.6467 4.1023 20 1 10.3099 -3.5396 5.5252 21 1 8.6531 -4.4502 4.0065 22 1 10.9757 -4.3086 3.3238 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 1.7211 -1.5952 -1.2329 27 1 1.7517 -1.7714 1.2055 28 1 1.6054 -0.2616 2.1370 29 1 3.8532 0.4371 1.3573 30 1 3.9996 -1.0726 0.4259 31 1 6.4684 -3.7542 6.8620 32 1 8.5234 -2.8596 5.7108 33 1 10.4239 -0.3780 2.5253 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870044057.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:32 Heat of formation + Delta-G solvation = -133.631918 kcal Electronic energy + Delta-G solvation = -18108.348783 eV Core-core repulsion = 15031.906930 eV Total energy + Delta-G solvation = -3076.441853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.28725 -37.92570 -36.98401 -35.07166 -33.55328 -32.34621 -29.69651 -29.02194 -26.87461 -23.65724 -22.09405 -21.42754 -20.92348 -19.26980 -17.85081 -16.81658 -16.42459 -16.15545 -15.58790 -15.18922 -14.96169 -14.16853 -14.00251 -13.63923 -13.41015 -13.12202 -12.82768 -12.23020 -12.02242 -11.88622 -11.86667 -11.44465 -11.23556 -11.22621 -10.90108 -10.74236 -10.24384 -10.18188 -10.04407 -9.67007 -9.64944 -9.40304 -8.84428 -7.92443 -7.66608 -7.40135 -4.79630 1.67295 2.83549 2.91164 3.13119 3.28256 3.43397 3.47703 3.72847 3.75416 4.17557 4.31351 4.79997 4.86284 4.97920 5.07341 5.26523 5.41170 5.59742 5.71517 5.73691 5.81121 5.91045 6.11934 6.18643 6.19367 6.74454 6.78005 7.13587 7.15869 7.30101 7.54655 7.67748 7.93173 8.27737 8.45221 9.28987 9.58120 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026179 B = 0.004955 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.313527 B = 5649.988338 C = 6439.490016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.100 0.900 4 O -0.562 6.562 5 C -0.149 4.149 6 C 0.076 3.924 7 O -0.373 6.373 8 C 0.532 3.468 9 O -0.547 6.547 10 C -0.415 4.415 11 S 0.015 5.985 12 C -0.174 4.174 13 C -0.167 4.167 14 C 0.111 3.889 15 C -0.409 4.409 16 H 0.111 0.889 17 C 0.033 3.967 18 N -0.769 5.769 19 Si 1.066 2.934 20 H -0.270 1.270 21 H -0.254 1.254 22 H -0.279 1.279 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.375 0.625 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.148 0.852 32 H 0.125 0.875 33 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.679 -2.170 0.069 11.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.045 3.955 3 H 0.118 0.882 4 O -0.368 6.368 5 C -0.187 4.187 6 C 0.001 3.999 7 O -0.292 6.292 8 C 0.388 3.612 9 O -0.444 6.444 10 C -0.531 4.531 11 S 0.273 5.727 12 C -0.309 4.309 13 C -0.201 4.201 14 C 0.100 3.900 15 C -0.439 4.439 16 H 0.129 0.871 17 C -0.193 4.193 18 N -0.390 5.390 19 Si 0.890 3.110 20 H -0.196 1.196 21 H -0.178 1.178 22 H -0.206 1.206 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.222 0.778 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.166 0.834 32 H 0.143 0.857 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.529 -2.653 0.262 11.833 hybrid contribution 0.073 1.142 -0.498 1.248 sum -11.456 -1.511 -0.236 11.557 Atomic orbital electron populations 1.22476 0.96122 1.02638 1.02758 1.21856 0.92794 0.96899 0.83972 0.88212 1.86609 1.77305 1.29075 1.43801 1.22287 0.95116 1.02173 0.99114 1.22191 0.93008 0.96916 0.87805 1.86148 1.26849 1.71896 1.44351 1.18192 0.78726 0.79176 0.85117 1.90736 1.59227 1.46852 1.47536 1.20851 0.95356 1.31041 1.05858 1.83260 1.09454 1.58403 1.21624 1.25259 0.96950 1.05308 1.03377 1.20283 0.98644 1.03433 0.97704 1.16890 0.91461 0.90166 0.91466 1.21234 0.92897 1.11741 1.18078 0.87104 1.27800 0.91468 1.05421 0.94563 1.70395 1.34498 1.12694 1.21369 0.83753 0.77671 0.72971 0.76573 1.19649 1.17839 1.20602 0.91425 0.91759 0.92204 0.77822 0.90766 0.90207 0.92750 0.91879 0.83418 0.85721 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.53 37.16 0.35 -1.19 16 2 C 0.10 1.16 3.59 -26.73 -0.10 1.06 16 3 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 4 O -0.56 -6.92 12.87 -35.23 -0.45 -7.38 16 5 C -0.15 -1.96 5.26 -26.73 -0.14 -2.10 16 6 C 0.08 1.39 5.27 37.16 0.20 1.59 16 7 O -0.37 -8.32 9.87 -41.34 -0.41 -8.73 16 8 C 0.53 13.85 7.73 32.07 0.25 14.09 16 9 O -0.55 -15.55 14.10 -19.41 -0.27 -15.82 16 10 C -0.42 -10.66 6.36 -37.69 -0.24 -10.90 16 11 S 0.01 0.31 23.02 -107.50 -2.47 -2.16 16 12 C -0.17 -3.44 11.11 28.88 0.32 -3.12 16 13 C -0.17 -3.73 7.24 -40.90 -0.30 -4.03 16 14 C 0.11 2.86 5.16 -107.96 -0.56 2.30 16 15 C -0.41 -11.11 8.79 -37.94 -0.33 -11.44 16 16 H 0.11 3.31 6.24 -52.48 -0.33 2.99 16 17 C 0.03 0.82 5.48 -17.28 -0.09 0.73 16 18 N -0.77 -19.48 13.64 55.57 0.76 -18.72 16 19 Si 1.07 22.06 24.91 -169.99 -4.23 17.83 16 20 H -0.27 -5.08 6.81 56.52 0.38 -4.69 16 21 H -0.25 -5.26 6.57 56.52 0.37 -4.89 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.37 3.25 9.05 45.56 0.41 3.66 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 1.02 8.13 -51.93 -0.42 0.59 16 30 H 0.06 1.22 7.81 -51.93 -0.41 0.81 16 31 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.13 2.57 4.52 -52.49 -0.24 2.33 16 33 H 0.30 7.44 8.73 -40.82 -0.36 7.08 16 LS Contribution 295.80 15.07 4.46 4.46 Total: -1.00 -30.56 295.80 -6.41 -36.96 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -3.14 Total: 6.57 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.64 Total: -13.00 kcal Atomic # 7 Polarization: -19.48 SS G_CDS: 0.76 Total: -18.72 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.14 Total: -31.93 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.23 Total: 17.83 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -2.47 Total: -2.16 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.56 -6.41 -36.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044057.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.667 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds