Wall clock time and date at job start Mon Mar 30 2020 01:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99671 * 2 1 4 4 C 1.53008 * 109.46790 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.47109 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.47205 * 180.02562 * 5 4 3 7 7 C 1.35003 * 117.00149 * 180.02562 * 6 5 4 8 8 O 1.21684 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.41747 * 119.99923 * 179.97438 * 7 6 5 10 10 S 1.75842 * 125.45707 * 0.13991 * 9 7 6 11 11 C 1.75655 * 91.48901 * 180.18322 * 10 9 7 12 12 C 1.32870 * 110.87086 * 359.81856 * 11 10 9 13 13 C 1.39684 * 115.27500 * 359.97438 * 12 11 10 14 14 C 1.40505 * 123.35789 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99457 * 155.41612 * 14 13 12 16 16 C 1.40336 * 120.00101 * 335.41110 * 14 13 12 17 17 N 1.30620 * 120.00361 * 335.47078 * 16 14 13 18 18 Si 1.86797 * 119.99801 * 155.47733 * 16 14 13 19 19 H 1.48503 * 109.47432 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.46941 * 299.99475 * 18 16 14 21 21 H 1.48498 * 109.47561 * 59.99853 * 18 16 14 22 22 H 1.09003 * 109.47200 * 300.00426 * 1 2 3 23 23 H 1.09003 * 109.46874 * 60.00212 * 1 2 3 24 24 H 1.08998 * 109.47133 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47430 * 60.00433 * 3 2 1 26 26 H 1.08994 * 109.47208 * 299.99103 * 3 2 1 27 27 H 1.08997 * 109.46849 * 59.99477 * 4 3 2 28 28 H 1.08999 * 109.46855 * 300.00132 * 4 3 2 29 29 H 1.08997 * 109.47677 * 60.00002 * 5 4 3 30 30 H 1.09008 * 109.47189 * 299.99603 * 5 4 3 31 31 H 1.07993 * 124.56376 * 179.84035 * 11 10 9 32 32 H 1.07994 * 122.36289 * 180.02562 * 12 11 10 33 33 H 0.97004 * 119.99984 * 356.12734 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5823 0.0000 6 8 5.5823 2.4695 0.0000 7 6 6.2883 3.6202 0.0000 8 8 5.7082 4.6899 -0.0005 9 6 7.7053 3.5824 0.0005 10 16 8.6867 2.1233 -0.0022 11 6 10.1692 3.0655 0.0061 12 6 9.9028 4.3672 0.0066 13 6 8.5457 4.6983 -0.0001 14 6 8.0733 6.0215 -0.0002 15 1 7.0928 6.2447 -0.3941 16 6 8.8754 7.0530 0.5117 17 7 9.8016 6.7842 1.3927 18 14 8.6184 8.8105 -0.0666 19 1 9.5858 9.7040 0.6196 20 1 8.8319 8.8848 -1.5343 21 1 7.2336 9.2399 0.2545 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6887 1.8463 -0.8900 27 1 3.8574 0.6435 -0.8891 28 1 3.8567 0.6439 0.8909 29 1 3.8359 3.1239 0.8895 30 1 3.8365 3.1227 -0.8905 31 1 11.1633 2.6436 0.0100 32 1 10.6805 5.1165 0.0109 33 1 9.8981 5.8818 1.7351 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870044120.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:00 Heat of formation + Delta-G solvation = -127.977488 kcal Electronic energy + Delta-G solvation = -17813.678013 eV Core-core repulsion = 14737.481355 eV Total energy + Delta-G solvation = -3076.196659 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24527 -38.05759 -37.14868 -35.23732 -33.27053 -32.62925 -29.27559 -27.44275 -26.42332 -24.79164 -22.88626 -21.49740 -20.65664 -19.18928 -17.69925 -16.86789 -16.47148 -16.41521 -15.45237 -15.42025 -14.91354 -14.49334 -14.08529 -13.74413 -13.65769 -13.19471 -12.44732 -12.22987 -12.01039 -11.89812 -11.61831 -11.47262 -11.24307 -11.02848 -10.93856 -10.77614 -10.53330 -10.21988 -9.81623 -9.80986 -9.68354 -9.26986 -8.87126 -7.87770 -7.50824 -7.47534 -4.77539 1.80109 2.95919 2.96802 3.02217 3.23905 3.34920 3.50961 3.57673 3.79137 4.16975 4.18192 4.91745 4.95941 5.01040 5.15350 5.21472 5.27574 5.43527 5.52228 5.57683 5.74798 5.83441 6.18028 6.18272 6.44531 6.78760 6.89422 6.99693 7.10068 7.22564 7.51318 7.69480 7.83509 8.25858 8.48754 9.29967 9.56208 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022855 B = 0.004438 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.817082 B = 6307.710296 C = 7407.346069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.066 3.934 4 C -0.117 4.117 5 C 0.078 3.922 6 O -0.369 6.369 7 C 0.532 3.468 8 O -0.552 6.552 9 C -0.421 4.421 10 S 0.002 5.998 11 C -0.184 4.184 12 C -0.149 4.149 13 C 0.110 3.890 14 C -0.408 4.408 15 H 0.113 0.887 16 C 0.027 3.973 17 N -0.757 5.757 18 Si 1.075 2.925 19 H -0.270 1.270 20 H -0.268 1.268 21 H -0.267 1.267 22 H 0.041 0.959 23 H 0.041 0.959 24 H 0.085 0.915 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.144 0.856 32 H 0.129 0.871 33 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 -5.144 -1.736 9.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.011 4.011 4 C -0.155 4.155 5 C 0.002 3.998 6 O -0.288 6.288 7 C 0.389 3.611 8 O -0.449 6.449 9 C -0.537 4.537 10 S 0.259 5.741 11 C -0.319 4.319 12 C -0.183 4.183 13 C 0.100 3.900 14 C -0.437 4.437 15 H 0.131 0.869 16 C -0.199 4.199 17 N -0.379 5.379 18 Si 0.895 3.105 19 H -0.194 1.194 20 H -0.193 1.193 21 H -0.192 1.192 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.103 0.897 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.147 0.853 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.450 -5.071 -1.529 9.141 hybrid contribution -0.490 0.036 -0.083 0.498 sum -7.940 -5.035 -1.612 9.539 Atomic orbital electron populations 1.22736 0.81068 1.02653 1.00012 1.87866 1.19646 1.28073 1.95454 1.22373 0.93623 0.84524 1.00563 1.21386 0.92382 0.97069 1.04657 1.22038 0.80135 0.95957 1.01630 1.86168 1.18538 1.37150 1.86968 1.18190 0.86881 0.80694 0.75372 1.90706 1.71145 1.30132 1.52939 1.20802 0.91641 0.94277 1.46947 1.83291 0.96864 1.11177 1.82748 1.25260 1.01125 0.97649 1.07823 1.20425 0.97110 0.95493 1.05260 1.16861 0.89687 0.92952 0.90540 1.21212 1.04525 0.90814 1.27185 0.86890 1.27699 0.91049 1.08135 0.93046 1.70440 1.24832 1.26857 1.15803 0.83489 0.78061 0.71407 0.77494 1.19392 1.19349 1.19230 0.94070 0.94069 0.89664 0.92955 0.92959 0.90234 0.90216 0.92411 0.92441 0.83855 0.85340 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.99 10.70 -35.23 -0.38 -5.37 16 3 C 0.07 0.81 5.94 37.16 0.22 1.03 16 4 C -0.12 -1.72 5.95 -26.73 -0.16 -1.87 16 5 C 0.08 1.41 5.38 37.15 0.20 1.61 16 6 O -0.37 -8.35 9.87 -41.33 -0.41 -8.76 16 7 C 0.53 13.86 7.73 32.07 0.25 14.11 16 8 O -0.55 -15.29 14.10 -19.40 -0.27 -15.56 16 9 C -0.42 -11.01 6.36 -37.70 -0.24 -11.25 16 10 S 0.00 0.05 23.02 -107.50 -2.47 -2.43 16 11 C -0.18 -3.86 11.11 28.88 0.32 -3.54 16 12 C -0.15 -3.49 8.03 -40.89 -0.33 -3.82 16 13 C 0.11 2.88 5.26 -107.96 -0.57 2.31 16 14 C -0.41 -10.74 8.34 -37.94 -0.32 -11.06 16 15 H 0.11 3.13 6.13 -52.49 -0.32 2.81 16 16 C 0.03 0.64 5.11 -17.28 -0.09 0.55 16 17 N -0.76 -18.41 12.52 55.57 0.70 -17.71 16 18 Si 1.07 20.28 30.00 -169.99 -5.10 15.18 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 21 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 22 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 30 H 0.06 1.02 8.13 -51.92 -0.42 0.59 16 31 H 0.14 2.47 8.06 -52.49 -0.42 2.05 16 32 H 0.13 2.90 6.82 -52.49 -0.36 2.55 16 33 H 0.30 7.53 6.50 -40.82 -0.27 7.27 16 LS Contribution 302.50 15.07 4.56 4.56 Total: -1.00 -29.50 302.50 -6.94 -36.44 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.97 Total: 4.18 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 0.40 Total: -10.54 kcal Atomic # 7 Polarization: -18.41 SS G_CDS: 0.70 Total: -17.71 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -1.06 Total: -29.69 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.10 Total: 15.18 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.47 Total: -2.43 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.50 -6.94 -36.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044120.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.534 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds