Wall clock time and date at job start Mon Mar 30 2020 01:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46456 * 2 1 4 4 C 1.53000 * 109.47295 * 239.99895 * 2 1 3 5 5 O 1.42905 * 109.46998 * 64.99666 * 4 2 1 6 6 C 1.52996 * 109.47173 * 119.99786 * 2 1 3 7 7 O 1.42906 * 109.47055 * 294.99901 * 6 2 1 8 8 C 1.35001 * 117.00013 * 179.97438 * 7 6 2 9 9 O 1.21690 * 119.99932 * 0.02562 * 8 7 6 10 10 C 1.41751 * 119.99940 * 180.02562 * 8 7 6 11 11 S 1.75830 * 125.45768 * 0.02562 * 10 8 7 12 12 C 1.75647 * 91.49313 * 179.97438 * 11 10 8 13 13 C 1.32873 * 110.86666 * 0.02562 * 12 11 10 14 14 C 1.39671 * 115.27540 * 359.76182 * 13 12 11 15 15 C 1.40515 * 123.36279 * 180.27730 * 14 13 12 16 16 H 1.07993 * 119.99846 * 154.33376 * 15 14 13 17 17 C 1.40333 * 119.99466 * 334.33167 * 15 14 13 18 18 N 1.30628 * 119.99637 * 162.70021 * 17 15 14 19 19 Si 1.86800 * 120.00629 * 342.70468 * 17 15 14 20 20 H 1.48504 * 109.47077 * 94.08806 * 19 17 15 21 21 H 1.48503 * 109.47145 * 214.09011 * 19 17 15 22 22 H 1.48503 * 109.46902 * 334.08900 * 19 17 15 23 23 H 1.09004 * 109.46456 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46884 * 60.00505 * 1 2 3 25 25 H 1.08994 * 109.47348 * 300.00546 * 1 2 3 26 26 H 1.09002 * 109.46901 * 184.99557 * 4 2 1 27 27 H 1.08995 * 109.47091 * 304.99765 * 4 2 1 28 28 H 0.96702 * 113.99907 * 179.97438 * 5 4 2 29 29 H 1.08996 * 109.47075 * 55.00383 * 6 2 1 30 30 H 1.08997 * 109.46996 * 175.00688 * 6 2 1 31 31 H 1.08003 * 124.56650 * 180.02562 * 12 11 10 32 32 H 1.07998 * 122.35920 * 180.02562 * 13 12 11 33 33 H 0.97000 * 119.99990 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.6620 0.0167 -2.4131 6 6 2.0400 -0.7212 1.2492 7 8 1.6620 0.0169 2.4131 8 6 2.0372 -0.4878 3.6076 9 8 2.6688 -1.5268 3.6579 10 6 1.6954 0.1924 4.8034 11 16 0.7899 1.6966 4.8980 12 6 0.8898 1.7000 6.6516 13 6 1.5587 0.6387 7.0896 14 6 2.0198 -0.2275 6.0956 15 6 2.7405 -1.4026 6.3682 16 1 2.7190 -2.2239 5.6673 17 6 3.4881 -1.5087 7.5510 18 7 3.8753 -2.6817 7.9758 19 14 3.9294 0.0273 8.5182 20 1 2.9132 0.2545 9.5770 21 1 5.2650 -0.1480 9.1433 22 1 3.9607 1.1964 7.6031 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 0.5139 0.8899 26 1 3.1264 -0.7994 -1.2055 27 1 1.6055 -1.7198 -1.2951 28 1 1.9532 -0.3830 -3.2441 29 1 1.6055 -1.7197 1.2951 30 1 3.1263 -0.7993 1.2056 31 1 0.4649 2.4620 7.2881 32 1 1.7298 0.4564 8.1402 33 1 4.3917 -2.7552 8.7936 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870044370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:47 Heat of formation + Delta-G solvation = -125.305752 kcal Electronic energy + Delta-G solvation = -18216.975637 eV Core-core repulsion = 15140.894833 eV Total energy + Delta-G solvation = -3076.080803 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.30839 -37.59617 -36.90268 -35.23402 -33.55325 -33.35937 -29.44592 -27.56553 -26.56105 -25.29477 -22.42906 -21.02345 -20.14984 -18.97142 -17.75613 -17.51943 -16.38969 -15.88373 -15.72070 -15.11051 -14.87778 -14.16353 -13.96105 -13.75385 -13.30359 -13.18943 -12.59828 -12.42555 -12.12829 -11.83323 -11.64654 -11.45209 -11.20696 -11.01868 -10.82550 -10.57891 -10.49094 -10.11660 -10.06073 -9.66447 -9.64490 -9.54478 -8.89888 -7.73259 -7.49494 -7.35340 -4.74517 1.65111 2.79115 2.83311 2.98523 3.02342 3.39514 3.45945 3.59964 3.66846 4.15403 4.51039 4.89162 4.98449 5.02598 5.20021 5.48639 5.54925 5.67074 5.74715 5.90324 5.99972 6.15444 6.16006 6.34053 6.48301 6.54727 6.78997 6.80684 7.17185 7.45155 7.50562 7.71963 8.05241 8.22688 8.55101 9.30637 9.60628 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.027737 B = 0.005108 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.245564 B = 5480.660790 C = 6223.532606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.085 0.915 4 C 0.084 3.916 5 O -0.571 6.571 6 C 0.081 3.919 7 O -0.366 6.366 8 C 0.531 3.469 9 O -0.544 6.544 10 C -0.410 4.410 11 S 0.020 5.980 12 C -0.175 4.175 13 C -0.169 4.169 14 C 0.106 3.894 15 C -0.344 4.344 16 H 0.124 0.876 17 C 0.074 3.926 18 N -0.757 5.757 19 Si 0.912 3.088 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.238 1.238 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.378 0.622 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.147 0.853 32 H 0.124 0.876 33 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.375 4.486 -7.636 9.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.104 0.896 4 C 0.006 3.994 5 O -0.376 6.376 6 C 0.005 3.995 7 O -0.285 6.285 8 C 0.387 3.613 9 O -0.440 6.440 10 C -0.527 4.527 11 S 0.278 5.722 12 C -0.310 4.310 13 C -0.203 4.203 14 C 0.096 3.904 15 C -0.374 4.374 16 H 0.142 0.858 17 C -0.152 4.152 18 N -0.378 5.378 19 Si 0.737 3.263 20 H -0.188 1.188 21 H -0.206 1.206 22 H -0.161 1.161 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.224 0.776 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.142 0.858 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.983 5.325 -8.132 10.168 hybrid contribution 1.203 -1.002 1.186 1.964 sum -1.780 4.323 -6.946 8.373 Atomic orbital electron populations 1.21713 0.93970 1.01698 1.02311 1.21059 0.97635 1.00997 0.91261 0.89630 1.22070 0.98094 0.94039 0.85224 1.86465 1.81546 1.53336 1.16233 1.22132 0.99297 0.94719 0.83349 1.86152 1.74501 1.53136 1.14752 1.18191 0.78096 0.83454 0.81536 1.90758 1.41857 1.24771 1.86599 1.20781 1.32755 1.06025 0.93106 1.83309 1.62014 1.26105 1.00787 1.25265 1.05115 1.01689 0.98970 1.20319 1.03387 0.96816 0.99769 1.16844 0.92887 0.91869 0.88844 1.20028 1.16679 0.99141 1.01517 0.85810 1.26648 0.93911 0.98185 0.96468 1.69574 1.23158 1.25884 1.19207 0.86363 0.77864 0.82343 0.79758 1.18781 1.20601 1.16065 0.93155 0.92266 0.91616 0.93386 0.93324 0.77586 0.92325 0.92435 0.83567 0.85840 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.99 37.16 0.33 -1.65 16 2 C -0.09 -1.33 2.86 -90.62 -0.26 -1.59 16 3 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 4 C 0.08 0.97 6.43 37.16 0.24 1.21 16 5 O -0.57 -6.33 13.19 -35.23 -0.46 -6.79 16 6 C 0.08 1.44 4.76 37.16 0.18 1.62 16 7 O -0.37 -8.02 9.41 -41.32 -0.39 -8.41 16 8 C 0.53 13.54 7.73 32.07 0.25 13.79 16 9 O -0.54 -15.08 14.11 -19.41 -0.27 -15.35 16 10 C -0.41 -10.39 6.36 -37.70 -0.24 -10.63 16 11 S 0.02 0.42 23.02 -107.50 -2.47 -2.06 16 12 C -0.18 -3.48 11.11 28.88 0.32 -3.16 16 13 C -0.17 -3.77 7.33 -40.90 -0.30 -4.07 16 14 C 0.11 2.71 5.15 -107.96 -0.56 2.15 16 15 C -0.34 -9.30 8.91 -37.94 -0.34 -9.64 16 16 H 0.12 3.73 6.27 -52.49 -0.33 3.40 16 17 C 0.07 1.82 5.48 -17.28 -0.09 1.73 16 18 N -0.76 -18.69 13.92 55.57 0.77 -17.91 16 19 Si 0.91 18.71 24.54 -169.99 -4.17 14.54 16 20 H -0.26 -4.98 6.69 56.52 0.38 -4.60 16 21 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.24 -5.06 6.73 56.52 0.38 -4.68 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.78 7.82 -51.93 -0.41 0.38 16 25 H 0.06 1.02 7.82 -51.93 -0.41 0.62 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.38 2.29 9.12 45.56 0.42 2.71 16 29 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 30 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.15 2.32 8.06 -52.48 -0.42 1.89 16 32 H 0.12 2.57 4.52 -52.49 -0.24 2.33 16 33 H 0.30 6.40 8.29 -40.82 -0.34 6.07 16 LS Contribution 294.53 15.07 4.44 4.44 Total: -1.00 -30.11 294.53 -6.13 -36.24 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.10 Total: 5.56 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -0.47 Total: -10.25 kcal Atomic # 7 Polarization: -18.69 SS G_CDS: 0.77 Total: -17.91 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.13 Total: -30.56 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.17 Total: 14.54 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -2.47 Total: -2.06 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.11 -6.13 -36.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.064 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds