Wall clock time and date at job start Mon Mar 30 2020 01:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46456 * 2 1 4 4 C 1.53000 * 109.47295 * 239.99895 * 2 1 3 5 5 O 1.42905 * 109.46998 * 64.99666 * 4 2 1 6 6 C 1.52996 * 109.47173 * 119.99786 * 2 1 3 7 7 O 1.42906 * 109.47055 * 294.99901 * 6 2 1 8 8 C 1.35001 * 117.00013 * 179.97438 * 7 6 2 9 9 O 1.21690 * 119.99932 * 0.02562 * 8 7 6 10 10 C 1.41751 * 119.99940 * 180.02562 * 8 7 6 11 11 S 1.75830 * 125.45768 * 0.02562 * 10 8 7 12 12 C 1.75647 * 91.49313 * 179.97438 * 11 10 8 13 13 C 1.32873 * 110.86666 * 0.02562 * 12 11 10 14 14 C 1.39671 * 115.27540 * 359.76182 * 13 12 11 15 15 C 1.40515 * 123.36279 * 180.27730 * 14 13 12 16 16 H 1.07993 * 119.99846 * 154.33376 * 15 14 13 17 17 C 1.40333 * 119.99466 * 334.33167 * 15 14 13 18 18 N 1.30628 * 119.99637 * 162.70021 * 17 15 14 19 19 Si 1.86800 * 120.00629 * 342.70468 * 17 15 14 20 20 H 1.48504 * 109.47077 * 94.08806 * 19 17 15 21 21 H 1.48503 * 109.47145 * 214.09011 * 19 17 15 22 22 H 1.48503 * 109.46902 * 334.08900 * 19 17 15 23 23 H 1.09004 * 109.46456 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46884 * 60.00505 * 1 2 3 25 25 H 1.08994 * 109.47348 * 300.00546 * 1 2 3 26 26 H 1.09002 * 109.46901 * 184.99557 * 4 2 1 27 27 H 1.08995 * 109.47091 * 304.99765 * 4 2 1 28 28 H 0.96702 * 113.99907 * 179.97438 * 5 4 2 29 29 H 1.08996 * 109.47075 * 55.00383 * 6 2 1 30 30 H 1.08997 * 109.46996 * 175.00688 * 6 2 1 31 31 H 1.08003 * 124.56650 * 180.02562 * 12 11 10 32 32 H 1.07998 * 122.35920 * 180.02562 * 13 12 11 33 33 H 0.97000 * 119.99990 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.6620 0.0167 -2.4131 6 6 2.0400 -0.7212 1.2492 7 8 1.6620 0.0169 2.4131 8 6 2.0372 -0.4878 3.6076 9 8 2.6688 -1.5268 3.6579 10 6 1.6954 0.1924 4.8034 11 16 0.7899 1.6966 4.8980 12 6 0.8898 1.7000 6.6516 13 6 1.5587 0.6387 7.0896 14 6 2.0198 -0.2275 6.0956 15 6 2.7405 -1.4026 6.3682 16 1 2.7190 -2.2239 5.6673 17 6 3.4881 -1.5087 7.5510 18 7 3.8753 -2.6817 7.9758 19 14 3.9294 0.0273 8.5182 20 1 2.9132 0.2545 9.5770 21 1 5.2650 -0.1480 9.1433 22 1 3.9607 1.1964 7.6031 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 0.5139 0.8899 26 1 3.1264 -0.7994 -1.2055 27 1 1.6055 -1.7198 -1.2951 28 1 1.9532 -0.3830 -3.2441 29 1 1.6055 -1.7197 1.2951 30 1 3.1263 -0.7993 1.2056 31 1 0.4649 2.4620 7.2881 32 1 1.7298 0.4564 8.1402 33 1 4.3917 -2.7552 8.7936 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870044370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:47 Heat of formation + Delta-G solvation = -146.758105 kcal Electronic energy + Delta-G solvation = -18217.905881 eV Core-core repulsion = 15140.894833 eV Total energy + Delta-G solvation = -3077.011047 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.13580 -39.01858 -38.31961 -36.95990 -35.38897 -34.65975 -31.24212 -29.38802 -27.79730 -26.63229 -24.19706 -22.75610 -21.39842 -20.83007 -19.53647 -18.61663 -18.08080 -17.47299 -17.41102 -16.81017 -16.17865 -15.81996 -15.40408 -15.14603 -14.89179 -14.68245 -14.13693 -13.94983 -13.57640 -13.41360 -13.32855 -13.06511 -12.80941 -12.50664 -12.36248 -12.09947 -11.82115 -11.68176 -11.39432 -11.38058 -11.22977 -10.93403 -10.87243 -9.55300 -9.25926 -9.18237 -6.69302 -0.12433 1.16894 1.18006 1.33989 1.43255 1.60634 1.64814 2.01987 2.08466 2.23173 3.06258 3.41444 3.73245 3.84322 4.13619 4.26624 4.32745 4.33844 4.51050 4.52295 4.63246 4.74346 4.79665 4.96659 5.01501 5.09427 5.20318 5.31251 5.37086 5.63887 5.79653 6.08714 6.32670 6.53977 6.89578 7.36863 7.85232 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.027737 B = 0.005108 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.245564 B = 5480.660790 C = 6223.532606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.078 0.922 4 C 0.090 3.910 5 O -0.583 6.583 6 C 0.075 3.925 7 O -0.364 6.364 8 C 0.523 3.477 9 O -0.581 6.581 10 C -0.452 4.452 11 S 0.058 5.942 12 C -0.142 4.142 13 C -0.200 4.200 14 C 0.101 3.899 15 C -0.387 4.387 16 H 0.072 0.928 17 C 0.040 3.960 18 N -0.793 5.793 19 Si 0.972 3.028 20 H -0.227 1.227 21 H -0.265 1.265 22 H -0.249 1.249 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.401 0.599 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.201 0.799 32 H 0.143 0.857 33 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 7.033 -7.097 10.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.097 0.903 4 C 0.013 3.987 5 O -0.392 6.392 6 C 0.000 4.000 7 O -0.283 6.283 8 C 0.381 3.619 9 O -0.480 6.480 10 C -0.568 4.568 11 S 0.316 5.684 12 C -0.277 4.277 13 C -0.233 4.233 14 C 0.090 3.910 15 C -0.417 4.417 16 H 0.090 0.910 17 C -0.183 4.183 18 N -0.415 5.415 19 Si 0.791 3.209 20 H -0.151 1.151 21 H -0.191 1.191 22 H -0.172 1.172 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.251 0.749 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.218 0.782 32 H 0.160 0.840 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.754 7.856 -7.632 11.578 hybrid contribution 1.371 -1.793 0.820 2.401 sum -2.383 6.063 -6.812 9.425 Atomic orbital electron populations 1.21674 0.93575 1.02031 1.01999 1.21030 0.97916 1.00492 0.90979 0.90328 1.21914 0.98629 0.93968 0.84236 1.86395 1.81832 1.53868 1.17129 1.22438 0.99396 0.94958 0.83253 1.86123 1.74077 1.53285 1.14825 1.18504 0.77588 0.83057 0.82799 1.90734 1.43493 1.26374 1.87407 1.21316 1.33813 1.08439 0.93256 1.83075 1.60342 1.22850 1.02143 1.25868 1.02031 1.01267 0.98558 1.20339 1.05435 0.97554 0.99973 1.17183 0.91857 0.91865 0.90080 1.19872 1.20191 0.99150 1.02466 0.91041 1.27473 0.92804 1.01452 0.96560 1.69574 1.23881 1.27736 1.20358 0.85487 0.79166 0.77449 0.78813 1.15067 1.19087 1.17214 0.92541 0.90946 0.93444 0.92404 0.92017 0.74873 0.92653 0.92719 0.78208 0.84019 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 8.99 71.98 0.65 -3.09 16 2 C -0.09 -2.45 2.86 -10.79 -0.03 -2.48 16 3 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.09 1.96 6.43 71.98 0.46 2.42 16 5 O -0.58 -11.58 13.19 -148.98 -1.97 -13.55 16 6 C 0.07 2.73 4.76 71.98 0.34 3.07 16 7 O -0.36 -16.40 9.41 -59.20 -0.56 -16.95 16 8 C 0.52 27.81 7.73 68.69 0.53 28.34 16 9 O -0.58 -34.44 14.11 19.21 0.27 -34.17 16 10 C -0.45 -23.27 6.36 23.49 0.15 -23.12 16 11 S 0.06 2.32 23.02 -56.49 -1.30 1.02 16 12 C -0.14 -5.06 11.11 66.64 0.74 -4.32 16 13 C -0.20 -8.46 7.33 21.44 0.16 -8.31 16 14 C 0.10 5.23 5.15 -22.03 -0.11 5.12 16 15 C -0.39 -22.03 8.91 23.34 0.21 -21.82 16 16 H 0.07 4.71 6.27 -2.91 -0.02 4.69 16 17 C 0.04 2.00 5.48 85.38 0.47 2.47 16 18 N -0.79 -40.36 13.92 21.89 0.30 -40.05 16 19 Si 0.97 37.22 24.54 68.60 1.68 38.90 16 20 H -0.23 -7.42 6.69 99.48 0.67 -6.75 16 21 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 22 H -0.25 -9.92 6.73 99.48 0.67 -9.25 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 1.80 7.82 -2.39 -0.02 1.79 16 25 H 0.05 1.46 7.82 -2.39 -0.02 1.44 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.40 3.80 9.12 -74.06 -0.68 3.12 16 29 H 0.06 2.05 8.13 -2.39 -0.02 2.03 16 30 H 0.05 2.01 8.13 -2.39 -0.02 1.99 16 31 H 0.20 4.96 8.06 -2.91 -0.02 4.93 16 32 H 0.14 5.41 4.52 -2.91 -0.01 5.39 16 33 H 0.31 13.57 8.29 -92.71 -0.77 12.80 16 Total: -1.00 -69.39 294.53 2.39 -67.01 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.39 Total: 19.52 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 3.56 Total: -21.73 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.30 Total: -40.05 kcal Atomic # 8 Polarization: -62.42 SS G_CDS: -2.25 Total: -64.67 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 1.68 Total: 38.90 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.30 Total: 1.02 kcal Total: -69.39 2.39 -67.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.751 kcal (2) G-P(sol) polarization free energy of solvation -69.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds