Wall clock time and date at job start Mon Mar 30 2020 01:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46943 * 2 1 4 4 C 1.52994 * 109.47225 * 120.00727 * 2 1 3 5 5 O 1.42902 * 109.47223 * 294.99947 * 4 2 1 6 6 C 1.53003 * 109.46882 * 240.00587 * 2 1 3 7 7 O 1.42899 * 109.47170 * 64.99664 * 6 2 1 8 8 C 1.35005 * 117.00157 * 179.97438 * 7 6 2 9 9 O 1.21690 * 119.99825 * 0.02562 * 8 7 6 10 10 C 1.41754 * 120.00167 * 180.02562 * 8 7 6 11 11 S 1.75837 * 125.45503 * 0.08963 * 10 8 7 12 12 C 1.75648 * 91.48723 * 180.21175 * 11 10 8 13 13 C 1.32873 * 110.87275 * 359.82900 * 12 11 10 14 14 C 1.39675 * 115.27350 * 0.02562 * 13 12 11 15 15 C 1.40502 * 123.36376 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00300 * 207.43286 * 15 14 13 17 17 C 1.40342 * 120.00122 * 27.42539 * 15 14 13 18 18 N 1.30628 * 119.99590 * 22.47944 * 17 15 14 19 19 Si 1.86800 * 120.00189 * 202.47634 * 17 15 14 20 20 H 1.48508 * 109.46907 * 180.02562 * 19 17 15 21 21 H 1.48494 * 109.47292 * 299.99797 * 19 17 15 22 22 H 1.48497 * 109.47171 * 60.00436 * 19 17 15 23 23 H 1.08995 * 109.47325 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47130 * 299.99112 * 1 2 3 25 25 H 1.08997 * 109.47334 * 59.99225 * 1 2 3 26 26 H 1.08999 * 109.47545 * 54.99355 * 4 2 1 27 27 H 1.08998 * 109.47386 * 174.99905 * 4 2 1 28 28 H 0.96695 * 114.00216 * 180.02562 * 5 4 2 29 29 H 1.09004 * 109.46951 * 304.99934 * 6 2 1 30 30 H 1.08999 * 109.47011 * 185.00098 * 6 2 1 31 31 H 1.08000 * 124.56578 * 179.83325 * 12 11 10 32 32 H 1.08001 * 122.36585 * 180.02562 * 13 12 11 33 33 H 0.96998 * 119.99727 * 5.86930 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 8 1.6620 0.0165 2.4130 6 6 2.0400 -0.7211 -1.2494 7 8 1.6618 0.0169 -2.4131 8 6 2.0379 -0.4872 -3.6077 9 8 2.6695 -1.5261 -3.6580 10 6 1.6970 0.1936 -4.8034 11 16 0.7940 1.6995 -4.8977 12 6 0.8887 1.6997 -6.6516 13 6 1.5569 0.6380 -7.0897 14 6 2.0256 -0.2237 -6.0954 15 6 2.7512 -1.3957 -6.3677 16 1 2.7133 -2.2266 -5.6788 17 6 3.5250 -1.4867 -7.5349 18 7 3.9349 -0.4002 -8.1331 19 14 3.9690 -3.1616 -8.2329 20 1 4.7865 -2.9854 -9.4602 21 1 4.7471 -3.9270 -7.2261 22 1 2.7269 -3.9035 -8.5674 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6054 -1.7199 1.2950 27 1 3.1263 -0.7996 1.2054 28 1 1.9532 -0.3832 3.2439 29 1 1.6053 -1.7197 -1.2953 30 1 3.1263 -0.7994 -1.2057 31 1 0.4614 2.4603 -7.2882 32 1 1.7257 0.4543 -8.1405 33 1 3.7779 0.4661 -7.7261 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870044371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:49 Heat of formation + Delta-G solvation = -155.505330 kcal Electronic energy + Delta-G solvation = -18200.265657 eV Core-core repulsion = 15122.875302 eV Total energy + Delta-G solvation = -3077.390355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.15316 -39.14067 -38.39576 -37.00209 -35.10154 -34.67769 -31.14565 -28.79987 -27.73090 -26.55736 -24.64432 -22.55358 -21.42160 -21.01595 -19.51717 -18.75150 -18.28873 -17.47799 -17.20024 -16.34466 -16.21210 -15.68450 -15.44889 -15.14429 -14.98687 -14.59998 -14.14135 -13.80366 -13.60348 -13.40691 -13.24029 -12.83028 -12.68280 -12.50985 -12.13811 -12.08225 -11.88634 -11.70752 -11.56701 -11.40065 -11.09393 -10.94511 -10.84587 -9.78071 -9.37605 -9.30526 -6.72800 -0.06892 1.18604 1.35864 1.46686 1.61952 1.78477 1.81209 2.06800 2.21235 2.27592 3.01107 3.39790 3.70828 3.82281 4.11272 4.22316 4.30357 4.32002 4.49873 4.60469 4.63796 4.77261 4.89880 4.96746 5.08877 5.15244 5.25233 5.28562 5.34667 5.62135 5.73128 5.92580 6.32434 6.52896 6.88616 7.33997 7.67672 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.005167 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.674608 B = 5417.268952 C = 6438.726035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 H 0.075 0.925 4 C 0.091 3.909 5 O -0.584 6.584 6 C 0.075 3.925 7 O -0.367 6.367 8 C 0.524 3.476 9 O -0.581 6.581 10 C -0.459 4.459 11 S 0.036 5.964 12 C -0.158 4.158 13 C -0.173 4.173 14 C 0.092 3.908 15 C -0.439 4.439 16 H 0.087 0.913 17 C 0.003 3.997 18 N -0.765 5.765 19 Si 1.120 2.880 20 H -0.256 1.256 21 H -0.267 1.267 22 H -0.255 1.255 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.401 0.599 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.190 0.810 32 H 0.132 0.868 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.033 -0.275 8.501 9.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.094 0.906 4 C 0.013 3.987 5 O -0.393 6.393 6 C 0.000 4.000 7 O -0.286 6.286 8 C 0.382 3.618 9 O -0.481 6.481 10 C -0.575 4.575 11 S 0.293 5.707 12 C -0.293 4.293 13 C -0.206 4.206 14 C 0.082 3.918 15 C -0.469 4.469 16 H 0.105 0.895 17 C -0.219 4.219 18 N -0.386 5.386 19 Si 0.935 3.065 20 H -0.179 1.179 21 H -0.191 1.191 22 H -0.179 1.179 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.252 0.748 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.207 0.793 32 H 0.150 0.850 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.012 0.157 7.890 8.447 hybrid contribution 0.253 -0.444 0.770 0.925 sum -2.758 -0.287 8.661 9.094 Atomic orbital electron populations 1.21670 0.93606 1.02101 1.01880 1.21036 0.97900 1.00416 0.91160 0.90635 1.21908 0.98635 0.93988 0.84132 1.86396 1.81837 1.53911 1.17153 1.22441 0.99373 0.95016 0.83154 1.86131 1.74066 1.53454 1.14921 1.18410 0.77646 0.83137 0.82639 1.90676 1.43673 1.26322 1.87428 1.21343 1.34431 1.08237 0.93495 1.83045 1.61794 1.23666 1.02185 1.25762 1.03263 1.01821 0.98433 1.20357 1.03383 0.96953 0.99871 1.17328 0.92356 0.92450 0.89709 1.21213 1.19981 0.99822 1.05868 0.89540 1.28917 0.91767 1.08625 0.92583 1.70510 1.29005 1.01284 1.37834 0.82972 0.78653 0.67951 0.76947 1.17924 1.19127 1.17881 0.92334 0.90965 0.93704 0.91824 0.92381 0.74842 0.92355 0.92734 0.79325 0.84994 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 8.99 71.98 0.65 -3.12 16 2 C -0.09 -2.49 2.86 -10.79 -0.03 -2.52 16 3 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.09 1.95 6.43 71.98 0.46 2.42 16 5 O -0.58 -11.60 13.19 -148.98 -1.97 -13.57 16 6 C 0.08 2.74 4.76 71.98 0.34 3.08 16 7 O -0.37 -16.75 9.41 -59.24 -0.56 -17.31 16 8 C 0.52 27.94 7.73 68.69 0.53 28.47 16 9 O -0.58 -33.46 14.13 19.21 0.27 -33.19 16 10 C -0.46 -24.32 6.36 23.49 0.15 -24.17 16 11 S 0.04 1.55 23.02 -56.49 -1.30 0.25 16 12 C -0.16 -6.27 11.11 66.64 0.74 -5.53 16 13 C -0.17 -7.97 8.03 21.44 0.17 -7.79 16 14 C 0.09 4.91 5.20 -22.03 -0.11 4.80 16 15 C -0.44 -23.84 8.29 23.33 0.19 -23.65 16 16 H 0.09 5.03 6.21 -2.91 -0.02 5.01 16 17 C 0.00 0.13 5.14 85.38 0.44 0.57 16 18 N -0.77 -37.43 12.53 21.90 0.27 -37.16 16 19 Si 1.12 40.76 29.99 68.60 2.06 42.82 16 20 H -0.26 -8.67 7.11 99.48 0.71 -7.97 16 21 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 22 H -0.25 -8.63 7.11 99.48 0.71 -7.93 16 23 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.82 7.82 -2.38 -0.02 1.81 16 25 H 0.04 1.41 7.82 -2.39 -0.02 1.39 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.40 3.75 9.12 -74.06 -0.68 3.08 16 29 H 0.06 2.11 8.13 -2.39 -0.02 2.09 16 30 H 0.05 1.99 8.13 -2.39 -0.02 1.97 16 31 H 0.19 5.70 8.06 -2.91 -0.02 5.68 16 32 H 0.13 5.92 6.96 -2.91 -0.02 5.89 16 33 H 0.29 14.78 6.58 -92.71 -0.61 14.17 16 Total: -1.00 -66.13 299.88 2.93 -63.20 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.62 Total: 22.41 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 3.53 Total: -27.46 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.27 Total: -37.16 kcal Atomic # 8 Polarization: -61.81 SS G_CDS: -2.25 Total: -64.06 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.06 Total: 42.82 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.30 Total: 0.25 kcal Total: -66.13 2.93 -63.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.309 kcal (2) G-P(sol) polarization free energy of solvation -66.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds