Wall clock time and date at job start Mon Mar 30 2020 01:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42894 * 113.99886 * 2 1 4 4 C 1.53004 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47294 * 184.99956 * 4 3 2 6 6 C 1.52998 * 109.47435 * 305.00495 * 4 3 2 7 7 O 1.42898 * 109.46930 * 65.00137 * 4 3 2 8 8 C 1.35010 * 117.00114 * 149.99703 * 7 4 3 9 9 O 1.21687 * 119.99498 * 0.02562 * 8 7 4 10 10 C 1.41748 * 120.00217 * 180.02562 * 8 7 4 11 11 S 1.75837 * 125.45791 * 0.02936 * 10 8 7 12 12 C 1.75648 * 91.49443 * 179.97438 * 11 10 8 13 13 C 1.32874 * 110.86573 * 359.97438 * 12 11 10 14 14 C 1.39672 * 115.27502 * 359.74570 * 13 12 11 15 15 C 1.40516 * 123.36072 * 180.27045 * 14 13 12 16 16 H 1.07994 * 120.00025 * 154.82202 * 15 14 13 17 17 C 1.40335 * 119.99558 * 334.82267 * 15 14 13 18 18 N 1.30617 * 120.00679 * 349.96295 * 17 15 14 19 19 Si 1.86803 * 119.99411 * 169.96360 * 17 15 14 20 20 H 1.48495 * 109.47499 * 60.00377 * 19 17 15 21 21 H 1.48507 * 109.47046 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47433 * 299.99876 * 19 17 15 23 23 H 1.08997 * 109.47105 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46547 * 299.99871 * 1 2 3 25 25 H 1.08996 * 109.47019 * 59.99524 * 1 2 3 26 26 H 1.09000 * 109.47075 * 60.00653 * 3 2 1 27 27 H 1.08995 * 109.47774 * 299.99870 * 3 2 1 28 28 H 1.08999 * 109.47356 * 180.02562 * 6 4 3 29 29 H 1.09005 * 109.46707 * 299.99734 * 6 4 3 30 30 H 1.08997 * 109.47319 * 59.99477 * 6 4 3 31 31 H 1.07999 * 124.56696 * 179.97438 * 12 11 10 32 32 H 1.08003 * 122.35998 * 180.02562 * 13 12 11 33 33 H 0.97003 * 120.00539 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9785 2.1764 0.0902 6 6 3.9782 0.3196 1.1825 7 8 3.9658 0.5792 -1.2201 8 6 5.1842 0.9317 -1.6830 9 8 5.8617 1.7315 -1.0649 10 6 5.6740 0.3701 -2.8888 11 16 4.8195 -0.7928 -3.8934 12 6 6.1495 -0.8494 -5.0393 13 6 7.1357 -0.0439 -4.6599 14 6 6.9099 0.6573 -3.4732 15 6 7.8356 1.5580 -2.9198 16 1 7.4951 2.3527 -2.2725 17 6 9.2025 1.4249 -3.2082 18 7 9.6393 0.3595 -3.8247 19 14 10.3974 2.7717 -2.7102 20 1 10.3574 2.9490 -1.2364 21 1 11.7717 2.3929 -3.1265 22 1 10.0133 4.0441 -3.3725 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 5.0648 0.2339 1.1832 29 1 3.6499 0.7815 2.1137 30 1 3.5351 -0.6722 1.0929 31 1 6.1638 -1.4571 -5.9320 32 1 8.0458 0.0646 -5.2312 33 1 10.5841 0.2677 -4.0244 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870044417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:51 Heat of formation + Delta-G solvation = -116.335014 kcal Electronic energy + Delta-G solvation = -18460.055453 eV Core-core repulsion = 15384.363650 eV Total energy + Delta-G solvation = -3075.691803 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.36914 -37.71765 -36.69321 -34.99351 -33.22676 -31.79297 -29.08628 -27.19911 -26.74277 -25.53152 -22.97478 -21.35652 -19.93393 -18.79811 -17.71944 -16.59829 -16.09487 -15.70222 -15.51472 -15.24069 -14.74449 -14.57722 -13.87386 -13.51442 -12.73553 -12.52879 -12.46992 -12.42262 -11.95734 -11.75679 -11.50763 -11.42800 -11.22668 -11.09159 -10.95838 -10.50100 -10.45525 -10.26612 -9.68137 -9.60286 -9.54452 -9.25034 -8.77254 -7.52910 -7.21264 -7.14998 -4.65714 1.95315 2.92865 2.94251 2.97778 3.18757 3.63009 3.74336 3.79895 3.91293 3.94485 4.26759 5.07648 5.15788 5.28294 5.34230 5.42945 5.49541 5.65445 5.71506 5.84036 5.97063 6.08614 6.31452 6.60904 6.72017 6.92168 7.05458 7.18848 7.26656 7.50080 7.58130 7.81511 8.25251 8.45148 8.57432 9.39465 9.73660 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.005812 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.969324 B = 4816.854862 C = 5811.595188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.068 3.932 4 C 0.091 3.909 5 H 0.089 0.911 6 C -0.162 4.162 7 O -0.354 6.354 8 C 0.532 3.468 9 O -0.552 6.552 10 C -0.411 4.411 11 S -0.009 6.009 12 C -0.203 4.203 13 C -0.110 4.110 14 C 0.142 3.858 15 C -0.365 4.365 16 H 0.112 0.888 17 C 0.065 3.935 18 N -0.766 5.766 19 Si 0.929 3.071 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.258 1.258 23 H 0.083 0.917 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.688 1.000 2.972 8.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C -0.009 4.009 4 C 0.034 3.966 5 H 0.106 0.894 6 C -0.220 4.220 7 O -0.273 6.273 8 C 0.389 3.611 9 O -0.449 6.449 10 C -0.527 4.527 11 S 0.248 5.752 12 C -0.337 4.337 13 C -0.142 4.142 14 C 0.131 3.869 15 C -0.395 4.395 16 H 0.130 0.870 17 C -0.158 4.158 18 N -0.390 5.390 19 Si 0.751 3.249 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.182 1.182 23 H 0.102 0.898 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.608 0.214 3.163 9.173 hybrid contribution 1.710 1.321 0.124 2.165 sum -6.897 1.535 3.286 7.793 Atomic orbital electron populations 1.22714 0.81811 1.02528 0.99533 1.88004 1.18870 1.27338 1.95255 1.22673 0.92648 0.85215 1.00363 1.22015 0.91625 0.98320 0.84591 0.89362 1.22083 1.02176 1.01166 0.96536 1.86360 1.36379 1.66153 1.38405 1.18320 0.78491 0.80001 0.84334 1.90691 1.57515 1.36741 1.59925 1.21030 1.05482 1.21264 1.04965 1.83298 1.21843 1.49041 1.21021 1.25287 0.99138 1.05940 1.03358 1.20579 0.98743 0.97415 0.97511 1.16919 0.90094 0.90007 0.89920 1.20152 0.89870 1.09334 1.20134 0.87003 1.26442 1.00322 0.96531 0.92513 1.69662 1.17870 1.24787 1.26660 0.85995 0.77489 0.80534 0.80846 1.18099 1.19921 1.18203 0.89815 0.94555 0.94218 0.92142 0.92666 0.91975 0.92204 0.91243 0.84258 0.83864 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.96 9.79 -40.09 -0.39 -6.35 16 3 C 0.07 1.02 5.81 37.16 0.22 1.23 16 4 C 0.09 1.69 2.93 -26.73 -0.08 1.62 16 5 H 0.09 1.67 7.11 -51.93 -0.37 1.30 16 6 C -0.16 -2.77 9.33 37.16 0.35 -2.43 16 7 O -0.35 -8.19 9.48 -44.47 -0.42 -8.61 16 8 C 0.53 13.89 7.69 32.07 0.25 14.14 16 9 O -0.55 -15.10 13.57 -19.41 -0.26 -15.36 16 10 C -0.41 -10.95 6.36 -37.70 -0.24 -11.19 16 11 S -0.01 -0.20 23.02 -107.50 -2.47 -2.68 16 12 C -0.20 -4.49 11.11 28.88 0.32 -4.17 16 13 C -0.11 -2.69 8.81 -40.90 -0.36 -3.05 16 14 C 0.14 3.80 5.53 -107.96 -0.60 3.21 16 15 C -0.36 -9.69 8.40 -37.94 -0.32 -10.01 16 16 H 0.11 3.08 6.07 -52.49 -0.32 2.77 16 17 C 0.07 1.55 5.37 -17.28 -0.09 1.46 16 18 N -0.77 -18.12 10.86 55.57 0.60 -17.52 16 19 Si 0.93 17.97 29.57 -169.99 -5.03 12.94 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 22 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 23 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.21 7.56 -51.93 -0.39 0.81 16 31 H 0.14 2.58 8.06 -52.49 -0.42 2.16 16 32 H 0.14 3.43 6.37 -52.48 -0.33 3.10 16 33 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 LS Contribution 300.43 15.07 4.53 4.53 Total: -1.00 -29.67 300.43 -6.82 -36.49 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -3.93 Total: 4.28 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 0.56 Total: -7.72 kcal Atomic # 7 Polarization: -18.12 SS G_CDS: 0.60 Total: -17.52 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.08 Total: -30.32 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -2.47 Total: -2.68 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.67 -6.82 -36.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.843 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds