Wall clock time and date at job start Mon Mar 30 2020 01:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42888 * 114.00555 * 2 1 4 4 C 1.53000 * 109.47633 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47082 * 175.00159 * 4 3 2 6 6 C 1.52997 * 109.47112 * 54.99451 * 4 3 2 7 7 O 1.42905 * 109.46930 * 294.99919 * 4 3 2 8 8 C 1.35003 * 117.00015 * 210.00189 * 7 4 3 9 9 O 1.21687 * 120.00021 * 359.97438 * 8 7 4 10 10 C 1.41753 * 119.99841 * 179.97438 * 8 7 4 11 11 S 1.75837 * 125.45781 * 0.02562 * 10 8 7 12 12 C 1.75642 * 91.49212 * 179.97438 * 11 10 8 13 13 C 1.32875 * 110.87102 * 359.97438 * 12 11 10 14 14 C 1.39680 * 115.27273 * 359.76345 * 13 12 11 15 15 C 1.40503 * 123.36196 * 180.27378 * 14 13 12 16 16 H 1.08002 * 120.00177 * 154.33797 * 15 14 13 17 17 C 1.40340 * 119.99960 * 334.33564 * 15 14 13 18 18 N 1.30620 * 119.99734 * 162.70540 * 17 15 14 19 19 Si 1.86793 * 120.00135 * 342.69982 * 17 15 14 20 20 H 1.48507 * 109.47129 * 94.08963 * 19 17 15 21 21 H 1.48500 * 109.47608 * 214.09229 * 19 17 15 22 22 H 1.48496 * 109.47396 * 334.09375 * 19 17 15 23 23 H 1.09000 * 109.47351 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46708 * 300.00462 * 1 2 3 25 25 H 1.08997 * 109.47326 * 59.99558 * 1 2 3 26 26 H 1.09006 * 109.47320 * 59.99957 * 3 2 1 27 27 H 1.09008 * 109.47010 * 300.00251 * 3 2 1 28 28 H 1.08994 * 109.47289 * 300.00312 * 6 4 3 29 29 H 1.09001 * 109.47062 * 60.00732 * 6 4 3 30 30 H 1.09000 * 109.46883 * 180.02562 * 6 4 3 31 31 H 1.08001 * 124.56632 * 180.02562 * 12 11 10 32 32 H 1.07995 * 122.36478 * 180.02562 * 13 12 11 33 33 H 0.97008 * 119.99666 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9785 2.1764 -0.0902 6 6 3.9781 0.3195 -1.1825 7 8 3.9659 0.5790 1.2202 8 6 5.1841 0.9315 1.6830 9 8 5.8617 1.7313 1.0650 10 6 5.6739 0.3699 2.8888 11 16 4.8199 -0.7941 3.8927 12 6 6.1502 -0.8512 5.0382 13 6 7.1366 -0.0459 4.6587 14 6 6.9152 0.6474 3.4665 15 6 7.8462 1.5382 2.9064 16 1 7.8427 1.7248 1.8426 17 6 8.7808 2.1856 3.7292 18 7 9.8426 2.7360 3.2041 19 14 8.5061 2.2605 5.5753 20 1 9.2159 1.1308 6.2276 21 1 9.0313 3.5456 6.1024 22 1 7.0526 2.1643 5.8639 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.5351 -0.6723 -1.0929 29 1 3.6499 0.7813 -2.1137 30 1 5.0647 0.2331 -1.1827 31 1 6.1648 -1.4596 5.9304 32 1 8.0471 0.0616 5.2294 33 1 10.4888 3.1832 3.7729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870044419.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:52 Heat of formation + Delta-G solvation = -111.537414 kcal Electronic energy + Delta-G solvation = -18513.037331 eV Core-core repulsion = 15437.553567 eV Total energy + Delta-G solvation = -3075.483764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.40813 -37.76936 -36.88631 -35.03673 -33.51663 -31.82329 -29.32352 -27.23037 -27.11464 -25.55629 -22.82800 -21.59079 -20.14361 -18.94122 -17.92025 -16.62393 -16.13303 -15.84630 -15.56660 -15.28844 -14.81511 -14.63624 -13.84579 -13.65673 -13.32035 -12.82059 -12.52654 -12.47254 -12.16183 -11.79193 -11.63553 -11.48610 -11.41623 -11.06030 -10.96242 -10.57031 -10.46389 -10.09265 -9.64618 -9.58853 -9.56430 -9.50858 -8.84612 -7.69892 -7.45674 -7.32196 -4.70914 1.68507 2.81237 2.86799 3.00745 3.04426 3.42609 3.50310 3.68935 3.88803 3.90187 4.19984 5.01208 5.06225 5.25734 5.32724 5.41283 5.47920 5.63937 5.70361 5.76992 5.82285 5.94800 6.21959 6.29777 6.56889 6.60291 6.82944 6.87342 7.19203 7.27432 7.50790 7.77220 8.08924 8.26301 8.58685 9.35600 9.63866 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.005820 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.522524 B = 4809.725510 C = 5514.050367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.068 3.932 4 C 0.091 3.909 5 H 0.090 0.910 6 C -0.162 4.162 7 O -0.355 6.355 8 C 0.529 3.471 9 O -0.544 6.544 10 C -0.409 4.409 11 S 0.023 5.977 12 C -0.177 4.177 13 C -0.170 4.170 14 C 0.106 3.894 15 C -0.346 4.346 16 H 0.124 0.876 17 C 0.075 3.925 18 N -0.758 5.758 19 Si 0.912 3.088 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.238 1.238 23 H 0.083 0.917 24 H 0.039 0.961 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.146 0.854 32 H 0.124 0.876 33 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.857 -2.370 -0.435 10.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C -0.009 4.009 4 C 0.035 3.965 5 H 0.108 0.892 6 C -0.219 4.219 7 O -0.274 6.274 8 C 0.385 3.615 9 O -0.440 6.440 10 C -0.526 4.526 11 S 0.282 5.718 12 C -0.312 4.312 13 C -0.204 4.204 14 C 0.096 3.904 15 C -0.375 4.375 16 H 0.142 0.858 17 C -0.151 4.151 18 N -0.380 5.380 19 Si 0.737 3.263 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.161 1.161 23 H 0.102 0.898 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.141 0.859 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.751 -2.872 -0.779 11.155 hybrid contribution 1.275 1.073 0.769 1.835 sum -9.476 -1.799 -0.010 9.645 Atomic orbital electron populations 1.22713 0.81798 1.02513 0.99563 1.87993 1.18882 1.27385 1.95264 1.22679 0.92626 0.85186 1.00426 1.22025 0.91627 0.98411 0.84469 0.89246 1.22079 1.02161 1.01123 0.96577 1.86338 1.36537 1.65988 1.38573 1.18253 0.78553 0.80201 0.84451 1.90741 1.57607 1.36183 1.59486 1.20823 1.01337 1.23230 1.07184 1.83373 1.21088 1.48766 1.18586 1.25283 0.98452 1.04244 1.03260 1.20315 0.99910 1.00943 0.99220 1.16849 0.90369 0.93238 0.89949 1.20012 1.04020 1.14308 0.99188 0.85809 1.26635 0.92564 0.93043 1.02902 1.69577 1.06162 1.21889 1.40344 0.86369 0.82065 0.77801 0.80112 1.18818 1.20659 1.16104 0.89823 0.94223 0.94529 0.92642 0.92093 0.91270 0.92131 0.91983 0.83618 0.85892 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.84 9.79 -40.08 -0.39 -6.23 16 3 C 0.07 1.00 5.81 37.16 0.22 1.22 16 4 C 0.09 1.68 2.93 -26.73 -0.08 1.60 16 5 H 0.09 1.70 7.11 -51.93 -0.37 1.33 16 6 C -0.16 -2.72 9.33 37.16 0.35 -2.38 16 7 O -0.36 -8.03 9.48 -44.44 -0.42 -8.46 16 8 C 0.53 13.61 7.69 32.07 0.25 13.86 16 9 O -0.54 -15.03 13.58 -19.41 -0.26 -15.29 16 10 C -0.41 -10.51 6.36 -37.70 -0.24 -10.75 16 11 S 0.02 0.51 23.02 -107.50 -2.47 -1.97 16 12 C -0.18 -3.58 11.11 28.88 0.32 -3.26 16 13 C -0.17 -3.84 7.33 -40.89 -0.30 -4.14 16 14 C 0.11 2.75 5.15 -107.96 -0.56 2.19 16 15 C -0.35 -9.40 8.91 -37.94 -0.34 -9.74 16 16 H 0.12 3.75 6.28 -52.49 -0.33 3.42 16 17 C 0.07 1.85 5.47 -17.28 -0.09 1.75 16 18 N -0.76 -18.85 13.92 55.57 0.77 -18.07 16 19 Si 0.91 18.86 24.54 -169.99 -4.17 14.69 16 20 H -0.26 -5.04 6.69 56.52 0.38 -4.66 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.24 -5.11 6.73 56.52 0.38 -4.73 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.07 1.17 7.56 -51.93 -0.39 0.78 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.15 2.35 8.06 -52.49 -0.42 1.93 16 32 H 0.12 2.59 4.52 -52.49 -0.24 2.35 16 33 H 0.30 6.44 8.29 -40.82 -0.34 6.10 16 LS Contribution 294.76 15.07 4.44 4.44 Total: -1.00 -29.86 294.76 -5.76 -35.62 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -3.89 Total: 3.47 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 0.64 Total: -8.20 kcal Atomic # 7 Polarization: -18.85 SS G_CDS: 0.77 Total: -18.07 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -1.08 Total: -29.98 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.17 Total: 14.69 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -2.47 Total: -1.97 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.86 -5.76 -35.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044419.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.916 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds