Wall clock time and date at job start Mon Mar 30 2020 01:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42888 * 114.00555 * 2 1 4 4 C 1.53000 * 109.47633 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47082 * 175.00159 * 4 3 2 6 6 C 1.52997 * 109.47112 * 54.99451 * 4 3 2 7 7 O 1.42905 * 109.46930 * 294.99919 * 4 3 2 8 8 C 1.35003 * 117.00015 * 210.00189 * 7 4 3 9 9 O 1.21687 * 120.00021 * 359.97438 * 8 7 4 10 10 C 1.41753 * 119.99841 * 179.97438 * 8 7 4 11 11 S 1.75837 * 125.45781 * 0.02562 * 10 8 7 12 12 C 1.75642 * 91.49212 * 179.97438 * 11 10 8 13 13 C 1.32875 * 110.87102 * 359.97438 * 12 11 10 14 14 C 1.39680 * 115.27273 * 359.76345 * 13 12 11 15 15 C 1.40503 * 123.36196 * 180.27378 * 14 13 12 16 16 H 1.08002 * 120.00177 * 154.33797 * 15 14 13 17 17 C 1.40340 * 119.99960 * 334.33564 * 15 14 13 18 18 N 1.30620 * 119.99734 * 162.70540 * 17 15 14 19 19 Si 1.86793 * 120.00135 * 342.69982 * 17 15 14 20 20 H 1.48507 * 109.47129 * 94.08963 * 19 17 15 21 21 H 1.48500 * 109.47608 * 214.09229 * 19 17 15 22 22 H 1.48496 * 109.47396 * 334.09375 * 19 17 15 23 23 H 1.09000 * 109.47351 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46708 * 300.00462 * 1 2 3 25 25 H 1.08997 * 109.47326 * 59.99558 * 1 2 3 26 26 H 1.09006 * 109.47320 * 59.99957 * 3 2 1 27 27 H 1.09008 * 109.47010 * 300.00251 * 3 2 1 28 28 H 1.08994 * 109.47289 * 300.00312 * 6 4 3 29 29 H 1.09001 * 109.47062 * 60.00732 * 6 4 3 30 30 H 1.09000 * 109.46883 * 180.02562 * 6 4 3 31 31 H 1.08001 * 124.56632 * 180.02562 * 12 11 10 32 32 H 1.07995 * 122.36478 * 180.02562 * 13 12 11 33 33 H 0.97008 * 119.99666 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9785 2.1764 -0.0902 6 6 3.9781 0.3195 -1.1825 7 8 3.9659 0.5790 1.2202 8 6 5.1841 0.9315 1.6830 9 8 5.8617 1.7313 1.0650 10 6 5.6739 0.3699 2.8888 11 16 4.8199 -0.7941 3.8927 12 6 6.1502 -0.8512 5.0382 13 6 7.1366 -0.0459 4.6587 14 6 6.9152 0.6474 3.4665 15 6 7.8462 1.5382 2.9064 16 1 7.8427 1.7248 1.8426 17 6 8.7808 2.1856 3.7292 18 7 9.8426 2.7360 3.2041 19 14 8.5061 2.2605 5.5753 20 1 9.2159 1.1308 6.2276 21 1 9.0313 3.5456 6.1024 22 1 7.0526 2.1643 5.8639 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.5351 -0.6723 -1.0929 29 1 3.6499 0.7813 -2.1137 30 1 5.0647 0.2331 -1.1827 31 1 6.1648 -1.4596 5.9304 32 1 8.0471 0.0616 5.2294 33 1 10.4888 3.1832 3.7729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870044419.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:52 Heat of formation + Delta-G solvation = -131.104610 kcal Electronic energy + Delta-G solvation = -18513.885828 eV Core-core repulsion = 15437.553567 eV Total energy + Delta-G solvation = -3076.332261 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.20453 -39.17571 -38.50041 -36.87032 -35.37565 -33.30815 -31.13368 -29.03860 -28.31728 -26.64964 -24.62158 -23.26300 -21.71950 -20.81883 -19.70057 -18.37384 -17.57256 -17.36138 -17.02751 -16.74209 -16.41220 -16.19405 -15.49499 -15.23702 -14.95401 -14.36634 -14.12050 -13.96746 -13.71675 -13.35507 -13.09906 -13.04074 -12.84470 -12.76737 -12.36160 -12.27466 -11.94630 -11.80825 -11.40120 -11.26952 -11.22402 -10.83668 -10.61632 -9.54127 -9.25066 -9.16910 -6.67827 -0.10914 1.17355 1.19012 1.34418 1.43641 1.62469 1.66134 2.03059 2.23062 2.25776 2.82902 3.08011 3.78147 3.97649 4.20872 4.26066 4.31640 4.40536 4.53026 4.56983 4.62125 4.65145 4.78422 4.86203 4.87803 5.09316 5.12081 5.21906 5.39949 5.67757 5.83165 6.10507 6.23616 6.34256 6.55760 7.41778 7.86628 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.005820 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.522524 B = 4809.725510 C = 5514.050367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.076 3.924 4 C 0.075 3.925 5 H 0.076 0.924 6 C -0.153 4.153 7 O -0.358 6.358 8 C 0.522 3.478 9 O -0.579 6.579 10 C -0.453 4.453 11 S 0.056 5.944 12 C -0.144 4.144 13 C -0.200 4.200 14 C 0.101 3.899 15 C -0.388 4.388 16 H 0.071 0.929 17 C 0.040 3.960 18 N -0.794 5.794 19 Si 0.972 3.028 20 H -0.228 1.228 21 H -0.265 1.265 22 H -0.249 1.249 23 H 0.096 0.904 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.031 0.969 31 H 0.201 0.799 32 H 0.143 0.857 33 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.448 -3.525 1.749 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.000 4.000 4 C 0.019 3.981 5 H 0.094 0.906 6 C -0.210 4.210 7 O -0.277 6.277 8 C 0.380 3.620 9 O -0.478 6.478 10 C -0.568 4.568 11 S 0.315 5.685 12 C -0.279 4.279 13 C -0.233 4.233 14 C 0.090 3.910 15 C -0.418 4.418 16 H 0.089 0.911 17 C -0.182 4.182 18 N -0.417 5.417 19 Si 0.791 3.209 20 H -0.151 1.151 21 H -0.191 1.191 22 H -0.173 1.173 23 H 0.114 0.886 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.051 0.949 31 H 0.218 0.782 32 H 0.160 0.840 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.354 -4.041 1.379 13.071 hybrid contribution 1.611 1.378 -0.056 2.121 sum -10.743 -2.664 1.323 11.147 Atomic orbital electron populations 1.22946 0.79356 1.03869 1.00935 1.87936 1.21534 1.27532 1.95563 1.22612 0.89559 0.85584 1.02254 1.22476 0.94511 0.97740 0.83385 0.90593 1.22013 1.00136 1.01231 0.97639 1.86299 1.34890 1.66134 1.40400 1.18533 0.79135 0.79742 0.84627 1.90715 1.58735 1.37709 1.60650 1.21365 1.02577 1.24816 1.08075 1.83132 1.20951 1.46662 1.17762 1.25871 0.96177 1.02331 1.03526 1.20342 1.01863 1.02231 0.98866 1.17183 0.89821 0.92567 0.91402 1.19849 1.07039 1.17461 0.97436 0.91070 1.27463 0.91546 0.91807 1.07429 1.69577 1.07023 1.22512 1.42553 0.85483 0.81548 0.79721 0.74130 1.15144 1.19055 1.17253 0.88584 0.93658 0.92290 0.92625 0.88339 0.91288 0.88574 0.94948 0.78242 0.84033 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -11.90 9.79 -144.34 -1.41 -13.31 16 3 C 0.08 2.16 5.81 71.98 0.42 2.58 16 4 C 0.07 2.80 2.93 30.59 0.09 2.89 16 5 H 0.08 3.03 7.11 -2.39 -0.02 3.01 16 6 C -0.15 -5.20 9.33 71.98 0.67 -4.53 16 7 O -0.36 -16.69 9.48 -56.23 -0.53 -17.22 16 8 C 0.52 28.19 7.69 68.69 0.53 28.72 16 9 O -0.58 -34.47 13.58 19.22 0.26 -34.21 16 10 C -0.45 -23.72 6.36 23.49 0.15 -23.57 16 11 S 0.06 2.34 23.02 -56.49 -1.30 1.04 16 12 C -0.14 -5.25 11.11 66.64 0.74 -4.51 16 13 C -0.20 -8.61 7.33 21.44 0.16 -8.45 16 14 C 0.10 5.32 5.15 -22.03 -0.11 5.20 16 15 C -0.39 -22.31 8.91 23.33 0.21 -22.10 16 16 H 0.07 4.73 6.28 -2.91 -0.02 4.71 16 17 C 0.04 2.03 5.47 85.38 0.47 2.50 16 18 N -0.79 -40.76 13.92 21.89 0.30 -40.45 16 19 Si 0.97 37.62 24.54 68.60 1.68 39.31 16 20 H -0.23 -7.55 6.69 99.48 0.67 -6.88 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.25 -10.04 6.73 99.48 0.67 -9.37 16 23 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 24 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.07 2.33 7.56 -2.39 -0.02 2.31 16 29 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.20 5.11 8.06 -2.91 -0.02 5.08 16 32 H 0.14 5.49 4.52 -2.91 -0.01 5.48 16 33 H 0.31 13.68 8.29 -92.70 -0.77 12.91 16 Total: -1.00 -70.02 294.76 4.61 -65.40 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 1.05 Total: 19.00 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 4.56 Total: -19.56 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.30 Total: -40.45 kcal Atomic # 8 Polarization: -63.06 SS G_CDS: -1.69 Total: -64.74 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 1.68 Total: 39.31 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.30 Total: 1.04 kcal Total: -70.02 4.61 -65.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870044419.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.702 kcal (2) G-P(sol) polarization free energy of solvation -70.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds