Wall clock time and date at job start Mon Mar 30 2020 01:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00241 * 2 1 4 4 C 1.50694 * 109.47333 * 179.97438 * 3 2 1 5 5 S 1.70449 * 124.59631 * 269.96156 * 4 3 2 6 6 C 1.75498 * 92.45559 * 180.02562 * 5 4 3 7 7 C 1.32746 * 110.60098 * 359.71016 * 6 5 4 8 8 C 1.36106 * 124.59716 * 90.00446 * 4 3 2 9 9 C 1.47027 * 123.47236 * 359.96109 * 8 4 3 10 10 O 1.21562 * 120.00348 * 0.02562 * 9 8 4 11 11 O 1.34801 * 119.99966 * 180.02562 * 9 8 4 12 12 C 1.45191 * 117.00283 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47474 * 29.99863 * 12 11 9 14 14 C 1.52997 * 109.47471 * 269.99972 * 12 11 9 15 15 C 1.50703 * 109.47556 * 149.99571 * 12 11 9 16 16 H 1.08005 * 119.99551 * 34.99870 * 15 12 11 17 17 C 1.37868 * 120.00466 * 214.99849 * 15 12 11 18 18 N 1.31512 * 120.00194 * 184.91737 * 17 15 12 19 19 Si 1.86802 * 120.00167 * 4.91686 * 17 15 12 20 20 H 1.48496 * 109.47292 * 84.83080 * 19 17 15 21 21 H 1.48494 * 109.47356 * 204.83526 * 19 17 15 22 22 H 1.48500 * 109.46883 * 324.83313 * 19 17 15 23 23 H 1.09003 * 109.46628 * 60.00102 * 1 2 3 24 24 H 1.09005 * 109.46778 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47056 * 299.99769 * 1 2 3 26 26 H 1.09000 * 109.46667 * 60.00113 * 3 2 1 27 27 H 1.08999 * 109.47289 * 300.00459 * 3 2 1 28 28 H 1.08008 * 124.70332 * 180.02562 * 6 5 4 29 29 H 1.07998 * 123.46266 * 180.24738 * 7 6 5 30 30 H 1.08998 * 109.47049 * 55.02623 * 14 12 11 31 31 H 1.09004 * 109.47150 * 295.03448 * 14 12 11 32 32 H 1.08993 * 109.47646 * 175.03217 * 14 12 11 33 33 H 0.97002 * 119.99993 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 16 4.4768 1.1112 1.4041 6 6 5.9586 0.9939 0.4711 7 6 5.6939 1.0077 -0.8296 8 6 4.2834 1.1253 -1.1194 9 6 3.7365 1.1677 -2.4835 10 8 2.5367 1.2624 -2.6548 11 8 4.5655 1.1015 -3.5444 12 6 3.9559 1.1483 -4.8613 13 1 3.0389 1.7359 -4.8166 14 6 3.6286 -0.2733 -5.3227 15 6 4.9132 1.7847 -5.8358 16 1 5.9757 1.6186 -5.7355 17 6 4.4329 2.5789 -6.8552 18 7 5.2576 3.0553 -7.7621 19 14 2.6104 2.9784 -6.9484 20 1 2.3155 4.1494 -6.0842 21 1 2.2441 3.2946 -8.3523 22 1 1.8229 1.8087 -6.4828 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 6.9484 0.9157 0.8962 29 1 6.4550 0.9421 -1.5930 30 1 3.0072 -0.7643 -4.5738 31 1 4.5536 -0.8353 -5.4523 32 1 3.0919 -0.2332 -6.2705 33 1 4.9196 3.6144 -8.4791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870205163.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:40 Heat of formation + Delta-G solvation = -100.599457 kcal Electronic energy + Delta-G solvation = -18549.599365 eV Core-core repulsion = 15474.589907 eV Total energy + Delta-G solvation = -3075.009458 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.80101 -38.00057 -36.87225 -35.63544 -33.05294 -31.15659 -30.60448 -27.44964 -25.97186 -25.37064 -23.70291 -21.81194 -20.51726 -19.13415 -17.63290 -17.15782 -16.51006 -16.21751 -15.92402 -15.43925 -15.08104 -14.68169 -14.41423 -13.72533 -13.09596 -12.95243 -12.79075 -12.52043 -12.38992 -12.21023 -11.78897 -11.65735 -11.41798 -11.17617 -11.02592 -10.94187 -10.69872 -10.08126 -9.86998 -9.55179 -9.34160 -9.11576 -8.95197 -8.72432 -8.43345 -6.27910 -4.31590 0.67952 1.44793 1.85529 2.07821 3.20239 3.28259 3.33972 3.50567 3.67726 3.93873 4.25920 4.70949 4.93006 4.99795 5.11286 5.28758 5.40379 5.49436 5.57202 5.64695 5.70116 6.03204 6.07321 6.20475 6.32770 6.45935 6.54312 6.71961 7.07975 7.16429 7.36623 7.52170 8.23836 8.64398 8.82808 9.31407 10.83426 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021917 B = 0.005817 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.264135 B = 4812.693072 C = 5623.420948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.122 3.878 4 C -0.157 4.157 5 S 0.186 5.814 6 C -0.237 4.237 7 C -0.085 4.085 8 C -0.120 4.120 9 C 0.515 3.485 10 O -0.518 6.518 11 O -0.340 6.340 12 C 0.183 3.817 13 H 0.047 0.953 14 C -0.153 4.153 15 C -0.517 4.517 16 H 0.086 0.914 17 C 0.082 3.918 18 N -0.882 5.882 19 Si 0.869 3.131 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.260 1.260 23 H 0.047 0.953 24 H 0.086 0.914 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.171 0.829 29 H 0.162 0.838 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 -3.759 18.269 19.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C 0.045 3.955 4 C -0.276 4.276 5 S 0.453 5.547 6 C -0.372 4.372 7 C -0.114 4.114 8 C -0.137 4.137 9 C 0.359 3.641 10 O -0.411 6.411 11 O -0.256 6.256 12 C 0.130 3.870 13 H 0.065 0.935 14 C -0.211 4.211 15 C -0.554 4.554 16 H 0.104 0.896 17 C -0.122 4.122 18 N -0.518 5.518 19 Si 0.695 3.305 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.185 1.185 23 H 0.065 0.935 24 H 0.104 0.896 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.189 0.811 29 H 0.180 0.820 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.754 -3.761 19.534 20.453 hybrid contribution -0.833 0.496 -1.816 2.059 sum -5.587 -3.265 17.718 18.862 Atomic orbital electron populations 1.22727 0.80696 1.02739 1.00082 1.87913 1.19819 1.26616 1.95482 1.21000 0.85926 0.86171 1.02449 1.24146 0.99952 1.06125 0.97373 1.82812 0.95460 1.69488 1.06967 1.25464 1.02175 1.12365 0.97167 1.21413 0.94804 0.98732 0.96417 1.19700 0.93366 1.09082 0.91534 1.20377 0.84960 0.73087 0.85703 1.90707 1.16428 1.47120 1.86841 1.86750 1.40997 1.81334 1.16477 1.21013 0.95288 0.94697 0.76009 0.93536 1.22232 1.00602 0.98038 1.00182 1.20795 0.95442 1.30399 1.08793 0.89611 1.24900 0.97947 0.94168 0.95184 1.69853 1.35109 1.33147 1.13725 0.86965 0.85736 0.80090 0.77709 1.19610 1.20705 1.18467 0.93478 0.89595 0.94328 0.92657 0.88487 0.81119 0.82041 0.95034 0.92378 0.92005 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.89 10.69 -35.23 -0.38 -6.26 16 3 C 0.12 1.81 5.65 36.00 0.20 2.02 16 4 C -0.16 -2.41 5.98 -35.08 -0.21 -2.62 16 5 S 0.19 2.12 22.97 -107.50 -2.47 -0.35 16 6 C -0.24 -2.74 11.12 28.85 0.32 -2.42 16 7 C -0.09 -1.26 10.13 -39.01 -0.40 -1.65 16 8 C -0.12 -2.13 5.98 -104.65 -0.63 -2.75 16 9 C 0.52 11.20 7.90 34.29 0.27 11.48 16 10 O -0.52 -11.98 13.33 -19.31 -0.26 -12.24 16 11 O -0.34 -8.10 9.59 -40.77 -0.39 -8.50 16 12 C 0.18 4.68 2.23 -27.88 -0.06 4.62 16 13 H 0.05 1.24 4.31 -51.93 -0.22 1.01 16 14 C -0.15 -3.49 9.53 37.16 0.35 -3.14 16 15 C -0.52 -14.77 9.24 -34.44 -0.32 -15.09 16 16 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 17 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 18 N -0.88 -26.27 13.96 55.43 0.77 -25.50 16 19 Si 0.87 21.55 26.99 -169.99 -4.59 16.97 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.26 -6.31 6.82 56.52 0.39 -5.92 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.10 1.63 5.94 -51.93 -0.31 1.32 16 28 H 0.17 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.16 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 302.52 15.07 4.56 4.56 Total: -1.00 -32.24 302.52 -6.11 -38.35 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -3.91 Total: -1.24 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 0.55 Total: -5.79 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.77 Total: -25.50 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -1.02 Total: -27.00 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.59 Total: 16.97 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.47 Total: -0.35 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.24 -6.11 -38.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205163.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.254 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds