Wall clock time and date at job start Mon Mar 30 2020 01:26:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42900 * 114.00241 * 2 1
4 4 C 1.50694 * 109.47333 * 179.97438 * 3 2 1
5 5 S 1.70449 * 124.59631 * 269.96156 * 4 3 2
6 6 C 1.75498 * 92.45559 * 180.02562 * 5 4 3
7 7 C 1.32746 * 110.60098 * 359.71016 * 6 5 4
8 8 C 1.36106 * 124.59716 * 90.00446 * 4 3 2
9 9 C 1.47027 * 123.47236 * 359.96109 * 8 4 3
10 10 O 1.21562 * 120.00348 * 0.02562 * 9 8 4
11 11 O 1.34801 * 119.99966 * 180.02562 * 9 8 4
12 12 C 1.45191 * 117.00283 * 179.97438 * 11 9 8
13 13 H 1.09003 * 109.47474 * 29.99863 * 12 11 9
14 14 C 1.52997 * 109.47471 * 269.99972 * 12 11 9
15 15 C 1.50703 * 109.47556 * 149.99571 * 12 11 9
16 16 H 1.08005 * 119.99551 * 34.99870 * 15 12 11
17 17 C 1.37868 * 120.00466 * 214.99849 * 15 12 11
18 18 N 1.31512 * 120.00194 * 184.91737 * 17 15 12
19 19 Si 1.86802 * 120.00167 * 4.91686 * 17 15 12
20 20 H 1.48496 * 109.47292 * 84.83080 * 19 17 15
21 21 H 1.48494 * 109.47356 * 204.83526 * 19 17 15
22 22 H 1.48500 * 109.46883 * 324.83313 * 19 17 15
23 23 H 1.09003 * 109.46628 * 60.00102 * 1 2 3
24 24 H 1.09005 * 109.46778 * 179.97438 * 1 2 3
25 25 H 1.09002 * 109.47056 * 299.99769 * 1 2 3
26 26 H 1.09000 * 109.46667 * 60.00113 * 3 2 1
27 27 H 1.08999 * 109.47289 * 300.00459 * 3 2 1
28 28 H 1.08008 * 124.70332 * 180.02562 * 6 5 4
29 29 H 1.07998 * 123.46266 * 180.24738 * 7 6 5
30 30 H 1.08998 * 109.47049 * 55.02623 * 14 12 11
31 31 H 1.09004 * 109.47150 * 295.03448 * 14 12 11
32 32 H 1.08993 * 109.47646 * 175.03217 * 14 12 11
33 33 H 0.97002 * 119.99993 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5125 1.1864 0.0006
5 16 4.4768 1.1112 1.4041
6 6 5.9586 0.9939 0.4711
7 6 5.6939 1.0077 -0.8296
8 6 4.2834 1.1253 -1.1194
9 6 3.7365 1.1677 -2.4835
10 8 2.5367 1.2624 -2.6548
11 8 4.5655 1.1015 -3.5444
12 6 3.9559 1.1483 -4.8613
13 1 3.0389 1.7359 -4.8166
14 6 3.6286 -0.2733 -5.3227
15 6 4.9132 1.7847 -5.8358
16 1 5.9757 1.6186 -5.7355
17 6 4.4329 2.5789 -6.8552
18 7 5.2576 3.0553 -7.7621
19 14 2.6104 2.9784 -6.9484
20 1 2.3155 4.1494 -6.0842
21 1 2.2441 3.2946 -8.3523
22 1 1.8229 1.8087 -6.4828
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.6887 1.8463 0.8900
27 1 1.6887 1.8464 -0.8899
28 1 6.9484 0.9157 0.8962
29 1 6.4550 0.9421 -1.5930
30 1 3.0072 -0.7643 -4.5738
31 1 4.5536 -0.8353 -5.4523
32 1 3.0919 -0.2332 -6.2705
33 1 4.9196 3.6144 -8.4791
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000870205163.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:26:40
Heat of formation + Delta-G solvation = -100.599457 kcal
Electronic energy + Delta-G solvation = -18549.599365 eV
Core-core repulsion = 15474.589907 eV
Total energy + Delta-G solvation = -3075.009458 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.076 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-39.80101 -38.00057 -36.87225 -35.63544 -33.05294 -31.15659 -30.60448 -27.44964
-25.97186 -25.37064 -23.70291 -21.81194 -20.51726 -19.13415 -17.63290 -17.15782
-16.51006 -16.21751 -15.92402 -15.43925 -15.08104 -14.68169 -14.41423 -13.72533
-13.09596 -12.95243 -12.79075 -12.52043 -12.38992 -12.21023 -11.78897 -11.65735
-11.41798 -11.17617 -11.02592 -10.94187 -10.69872 -10.08126 -9.86998 -9.55179
-9.34160 -9.11576 -8.95197 -8.72432 -8.43345 -6.27910 -4.31590 0.67952
1.44793 1.85529 2.07821 3.20239 3.28259 3.33972 3.50567 3.67726
3.93873 4.25920 4.70949 4.93006 4.99795 5.11286 5.28758 5.40379
5.49436 5.57202 5.64695 5.70116 6.03204 6.07321 6.20475 6.32770
6.45935 6.54312 6.71961 7.07975 7.16429 7.36623 7.52170 8.23836
8.64398 8.82808 9.31407 10.83426
Molecular weight = 270.08amu
Principal moments of inertia in cm(-1)
A = 0.021917 B = 0.005817 C = 0.004978
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1277.264135 B = 4812.693072 C = 5623.420948
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.379 6.379
3 C 0.122 3.878
4 C -0.157 4.157
5 S 0.186 5.814
6 C -0.237 4.237
7 C -0.085 4.085
8 C -0.120 4.120
9 C 0.515 3.485
10 O -0.518 6.518
11 O -0.340 6.340
12 C 0.183 3.817
13 H 0.047 0.953
14 C -0.153 4.153
15 C -0.517 4.517
16 H 0.086 0.914
17 C 0.082 3.918
18 N -0.882 5.882
19 Si 0.869 3.131
20 H -0.271 1.271
21 H -0.281 1.281
22 H -0.260 1.260
23 H 0.047 0.953
24 H 0.086 0.914
25 H 0.038 0.962
26 H 0.055 0.945
27 H 0.097 0.903
28 H 0.171 0.829
29 H 0.162 0.838
30 H 0.031 0.969
31 H 0.057 0.943
32 H 0.061 0.939
33 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.272 -3.759 18.269 19.135
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.298 6.298
3 C 0.045 3.955
4 C -0.276 4.276
5 S 0.453 5.547
6 C -0.372 4.372
7 C -0.114 4.114
8 C -0.137 4.137
9 C 0.359 3.641
10 O -0.411 6.411
11 O -0.256 6.256
12 C 0.130 3.870
13 H 0.065 0.935
14 C -0.211 4.211
15 C -0.554 4.554
16 H 0.104 0.896
17 C -0.122 4.122
18 N -0.518 5.518
19 Si 0.695 3.305
20 H -0.196 1.196
21 H -0.207 1.207
22 H -0.185 1.185
23 H 0.065 0.935
24 H 0.104 0.896
25 H 0.057 0.943
26 H 0.073 0.927
27 H 0.115 0.885
28 H 0.189 0.811
29 H 0.180 0.820
30 H 0.050 0.950
31 H 0.076 0.924
32 H 0.080 0.920
33 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -4.754 -3.761 19.534 20.453
hybrid contribution -0.833 0.496 -1.816 2.059
sum -5.587 -3.265 17.718 18.862
Atomic orbital electron populations
1.22727 0.80696 1.02739 1.00082 1.87913 1.19819 1.26616 1.95482
1.21000 0.85926 0.86171 1.02449 1.24146 0.99952 1.06125 0.97373
1.82812 0.95460 1.69488 1.06967 1.25464 1.02175 1.12365 0.97167
1.21413 0.94804 0.98732 0.96417 1.19700 0.93366 1.09082 0.91534
1.20377 0.84960 0.73087 0.85703 1.90707 1.16428 1.47120 1.86841
1.86750 1.40997 1.81334 1.16477 1.21013 0.95288 0.94697 0.76009
0.93536 1.22232 1.00602 0.98038 1.00182 1.20795 0.95442 1.30399
1.08793 0.89611 1.24900 0.97947 0.94168 0.95184 1.69853 1.35109
1.33147 1.13725 0.86965 0.85736 0.80090 0.77709 1.19610 1.20705
1.18467 0.93478 0.89595 0.94328 0.92657 0.88487 0.81119 0.82041
0.95034 0.92378 0.92005 0.91983
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.40 11.01 101.05 1.11 1.51 16
2 O -0.38 -5.89 10.69 -35.23 -0.38 -6.26 16
3 C 0.12 1.81 5.65 36.00 0.20 2.02 16
4 C -0.16 -2.41 5.98 -35.08 -0.21 -2.62 16
5 S 0.19 2.12 22.97 -107.50 -2.47 -0.35 16
6 C -0.24 -2.74 11.12 28.85 0.32 -2.42 16
7 C -0.09 -1.26 10.13 -39.01 -0.40 -1.65 16
8 C -0.12 -2.13 5.98 -104.65 -0.63 -2.75 16
9 C 0.52 11.20 7.90 34.29 0.27 11.48 16
10 O -0.52 -11.98 13.33 -19.31 -0.26 -12.24 16
11 O -0.34 -8.10 9.59 -40.77 -0.39 -8.50 16
12 C 0.18 4.68 2.23 -27.88 -0.06 4.62 16
13 H 0.05 1.24 4.31 -51.93 -0.22 1.01 16
14 C -0.15 -3.49 9.53 37.16 0.35 -3.14 16
15 C -0.52 -14.77 9.24 -34.44 -0.32 -15.09 16
16 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16
17 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16
18 N -0.88 -26.27 13.96 55.43 0.77 -25.50 16
19 Si 0.87 21.55 26.99 -169.99 -4.59 16.97 16
20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16
21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16
22 H -0.26 -6.31 6.82 56.52 0.39 -5.92 16
23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16
25 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16
26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
27 H 0.10 1.63 5.94 -51.93 -0.31 1.32 16
28 H 0.17 1.41 8.06 -52.48 -0.42 0.99 16
29 H 0.16 2.31 8.06 -52.49 -0.42 1.89 16
30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16
31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16
32 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16
33 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16
LS Contribution 302.52 15.07 4.56 4.56
Total: -1.00 -32.24 302.52 -6.11 -38.35
By element:
Atomic # 1 Polarization: 2.68 SS G_CDS: -3.91 Total: -1.24 kcal
Atomic # 6 Polarization: -6.34 SS G_CDS: 0.55 Total: -5.79 kcal
Atomic # 7 Polarization: -26.27 SS G_CDS: 0.77 Total: -25.50 kcal
Atomic # 8 Polarization: -25.97 SS G_CDS: -1.02 Total: -27.00 kcal
Atomic # 14 Polarization: 21.55 SS G_CDS: -4.59 Total: 16.97 kcal
Atomic # 16 Polarization: 2.12 SS G_CDS: -2.47 Total: -0.35 kcal
Total LS contribution 4.56 Total: 4.56 kcal
Total: -32.24 -6.11 -38.35 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000870205163.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.254 kcal
(2) G-P(sol) polarization free energy of solvation -32.238 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.492 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.599 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds