Wall clock time and date at job start Mon Mar 30 2020 01:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00241 * 2 1 4 4 C 1.50694 * 109.47333 * 179.97438 * 3 2 1 5 5 S 1.70449 * 124.59631 * 269.96156 * 4 3 2 6 6 C 1.75498 * 92.45559 * 180.02562 * 5 4 3 7 7 C 1.32746 * 110.60098 * 359.71016 * 6 5 4 8 8 C 1.36106 * 124.59716 * 90.00446 * 4 3 2 9 9 C 1.47027 * 123.47236 * 359.96109 * 8 4 3 10 10 O 1.21562 * 120.00348 * 0.02562 * 9 8 4 11 11 O 1.34801 * 119.99966 * 180.02562 * 9 8 4 12 12 C 1.45191 * 117.00283 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47474 * 29.99863 * 12 11 9 14 14 C 1.52997 * 109.47471 * 269.99972 * 12 11 9 15 15 C 1.50703 * 109.47556 * 149.99571 * 12 11 9 16 16 H 1.08005 * 119.99551 * 34.99870 * 15 12 11 17 17 C 1.37868 * 120.00466 * 214.99849 * 15 12 11 18 18 N 1.31512 * 120.00194 * 184.91737 * 17 15 12 19 19 Si 1.86802 * 120.00167 * 4.91686 * 17 15 12 20 20 H 1.48496 * 109.47292 * 84.83080 * 19 17 15 21 21 H 1.48494 * 109.47356 * 204.83526 * 19 17 15 22 22 H 1.48500 * 109.46883 * 324.83313 * 19 17 15 23 23 H 1.09003 * 109.46628 * 60.00102 * 1 2 3 24 24 H 1.09005 * 109.46778 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47056 * 299.99769 * 1 2 3 26 26 H 1.09000 * 109.46667 * 60.00113 * 3 2 1 27 27 H 1.08999 * 109.47289 * 300.00459 * 3 2 1 28 28 H 1.08008 * 124.70332 * 180.02562 * 6 5 4 29 29 H 1.07998 * 123.46266 * 180.24738 * 7 6 5 30 30 H 1.08998 * 109.47049 * 55.02623 * 14 12 11 31 31 H 1.09004 * 109.47150 * 295.03448 * 14 12 11 32 32 H 1.08993 * 109.47646 * 175.03217 * 14 12 11 33 33 H 0.97002 * 119.99993 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 16 4.4768 1.1112 1.4041 6 6 5.9586 0.9939 0.4711 7 6 5.6939 1.0077 -0.8296 8 6 4.2834 1.1253 -1.1194 9 6 3.7365 1.1677 -2.4835 10 8 2.5367 1.2624 -2.6548 11 8 4.5655 1.1015 -3.5444 12 6 3.9559 1.1483 -4.8613 13 1 3.0389 1.7359 -4.8166 14 6 3.6286 -0.2733 -5.3227 15 6 4.9132 1.7847 -5.8358 16 1 5.9757 1.6186 -5.7355 17 6 4.4329 2.5789 -6.8552 18 7 5.2576 3.0553 -7.7621 19 14 2.6104 2.9784 -6.9484 20 1 2.3155 4.1494 -6.0842 21 1 2.2441 3.2946 -8.3523 22 1 1.8229 1.8087 -6.4828 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 6.9484 0.9157 0.8962 29 1 6.4550 0.9421 -1.5930 30 1 3.0072 -0.7643 -4.5738 31 1 4.5536 -0.8353 -5.4523 32 1 3.0919 -0.2332 -6.2705 33 1 4.9196 3.6144 -8.4791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870205163.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:40 Heat of formation + Delta-G solvation = -121.623555 kcal Electronic energy + Delta-G solvation = -18550.511038 eV Core-core repulsion = 15474.589907 eV Total energy + Delta-G solvation = -3075.921131 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.42784 -39.23389 -38.07649 -37.34109 -35.17956 -32.62088 -32.23721 -28.59587 -27.50098 -27.03124 -24.98772 -23.20645 -22.19715 -20.74013 -19.21819 -18.75926 -17.98788 -17.53804 -17.35075 -16.80951 -16.48155 -16.36523 -15.60666 -15.19053 -14.75944 -14.58264 -14.22272 -14.08981 -13.96879 -13.45358 -13.24770 -13.07749 -12.95356 -12.83500 -12.61164 -12.39793 -12.11139 -11.97371 -11.52150 -11.38497 -11.20335 -10.90070 -10.59665 -10.02009 -9.44929 -8.48986 -6.58688 -0.50532 0.42041 0.82024 0.85196 1.23243 1.26330 1.37302 2.02348 2.05617 2.17842 2.86148 2.91754 3.64905 3.79083 3.89908 4.18453 4.27577 4.39992 4.47045 4.50285 4.55198 4.57846 4.61152 4.77740 4.79500 4.96808 5.05138 5.22604 5.27526 5.35442 5.61229 6.06525 6.13386 6.49247 6.87875 7.09384 8.66352 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021917 B = 0.005817 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.264135 B = 4812.693072 C = 5623.420948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.120 3.880 4 C -0.175 4.175 5 S 0.286 5.714 6 C -0.220 4.220 7 C -0.113 4.113 8 C -0.161 4.161 9 C 0.509 3.491 10 O -0.541 6.541 11 O -0.353 6.353 12 C 0.184 3.816 13 H 0.037 0.963 14 C -0.146 4.146 15 C -0.530 4.530 16 H 0.049 0.951 17 C 0.037 3.963 18 N -0.921 5.921 19 Si 0.927 3.073 20 H -0.269 1.269 21 H -0.264 1.264 22 H -0.252 1.252 23 H 0.035 0.965 24 H 0.101 0.899 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.211 0.789 29 H 0.154 0.846 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 -4.076 21.200 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C 0.042 3.958 4 C -0.295 4.295 5 S 0.554 5.446 6 C -0.355 4.355 7 C -0.140 4.140 8 C -0.178 4.178 9 C 0.354 3.646 10 O -0.435 6.435 11 O -0.270 6.270 12 C 0.131 3.869 13 H 0.055 0.945 14 C -0.204 4.204 15 C -0.568 4.568 16 H 0.067 0.933 17 C -0.164 4.164 18 N -0.559 5.559 19 Si 0.750 3.250 20 H -0.195 1.195 21 H -0.188 1.188 22 H -0.176 1.176 23 H 0.053 0.947 24 H 0.119 0.881 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.228 0.772 29 H 0.171 0.829 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.648 -4.087 22.482 23.538 hybrid contribution -0.498 0.574 -2.509 2.621 sum -6.146 -3.513 19.973 21.191 Atomic orbital electron populations 1.22937 0.78943 1.04050 1.00852 1.87865 1.21855 1.27013 1.95643 1.21021 0.85887 0.86132 1.02752 1.24557 1.00895 1.05047 0.98954 1.82488 0.93036 1.65978 1.03129 1.25956 1.04443 1.08994 0.96073 1.21328 0.93400 1.01389 0.97911 1.19643 0.95198 1.13292 0.89646 1.21113 0.84695 0.72182 0.86602 1.90681 1.17165 1.48340 1.87268 1.86700 1.41610 1.82116 1.16541 1.20825 0.93841 0.95770 0.76511 0.94515 1.22133 1.01112 0.96476 1.00649 1.20893 0.94332 1.31255 1.10282 0.93280 1.25631 1.02395 0.93835 0.94569 1.69951 1.37287 1.34107 1.14538 0.86041 0.80360 0.80040 0.78564 1.19466 1.18831 1.17589 0.94674 0.88098 0.91548 0.89180 0.91404 0.77235 0.82856 0.93819 0.91954 0.91461 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.40 -12.02 10.69 -148.98 -1.59 -13.61 16 3 C 0.12 3.40 5.65 71.23 0.40 3.80 16 4 C -0.17 -5.09 5.98 25.19 0.15 -4.94 16 5 S 0.29 5.36 22.97 -56.49 -1.30 4.06 16 6 C -0.22 -4.32 11.12 66.64 0.74 -3.58 16 7 C -0.11 -3.24 10.13 22.68 0.23 -3.01 16 8 C -0.16 -5.68 5.98 -19.88 -0.12 -5.80 16 9 C 0.51 22.78 7.90 70.13 0.55 23.33 16 10 O -0.54 -25.70 13.33 19.63 0.26 -25.44 16 11 O -0.35 -17.53 9.59 -57.13 -0.55 -18.08 16 12 C 0.18 9.66 2.23 29.85 0.07 9.73 16 13 H 0.04 1.99 4.31 -2.39 -0.01 1.98 16 14 C -0.15 -6.72 9.53 71.98 0.69 -6.04 16 15 C -0.53 -31.47 9.24 25.60 0.24 -31.24 16 16 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 17 C 0.04 2.16 5.47 84.65 0.46 2.62 16 18 N -0.92 -56.19 13.96 21.44 0.30 -55.90 16 19 Si 0.93 44.79 26.99 68.60 1.85 46.64 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.25 -11.75 6.82 99.48 0.68 -11.07 16 23 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.07 2.31 5.94 -2.39 -0.01 2.30 16 28 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.15 4.50 8.06 -2.91 -0.02 4.48 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 2.76 8.14 -2.38 -0.02 2.74 16 32 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -72.69 302.52 4.73 -67.97 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.09 Total: 7.63 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 4.66 Total: -13.27 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.30 Total: -55.90 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -1.88 Total: -57.13 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.85 Total: 46.64 kcal Atomic # 16 Polarization: 5.36 SS G_CDS: -1.30 Total: 4.06 kcal Total: -72.69 4.73 -67.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205163.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.656 kcal (2) G-P(sol) polarization free energy of solvation -72.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds